Tag Archives: Graham D. Hamblin

Customizing DNA nanotubes quickly and cheaply

Building on some work published earlier this year, scientists from McGill University (Montréal, Québec) created a new technique for building DNA nanotubes block by block (my March 2, 2015 posting) and, now, the newest research from the McGill team features a way of making long DNA strands with that technique, as mentioned in a May 7, 2015 news item on Azonano,

Imagine taking strands of DNA – the material in our cells that determines how we look and function – and using it to build tiny structures that can deliver drugs to targets within the body or take electronic miniaturization to a whole new level.

While it may still sound like science fiction to most of us, researchers have been piecing together and experimenting with DNA structures for decades. And, in recent years, work by scientists such as McGill University chemistry professor Hanadi Sleiman has moved the use of man-made DNA structures closer to a variety of real-world applications.

But as these applications continue to develop, they require increasingly large and complex strands of DNA. That has posed a problem, because the automated systems used for making synthetic DNA can’t produce strands containing more than about 100 bases (the chemicals that link up to form the strands). It can take hundreds of these short strands to assemble nanotubes for applications such as smart drug-delivery systems.

Here’s a video featuring one of the researchers taking about this latest work from McGill University,

A May 6, 2015 McGill University news release, which originated the news item, describes the long DNA nanotubes in more detail,

In new research published May 5 in Nature Communications, however, Sleiman’’s team at McGill reports that it has devised a technique to create much longer strands of DNA, including custom-designed sequence patterns. What’s more, this approach also produces large amounts of these longer strands in just a few hours, making the process potentially more economical and commercially viable than existing techniques.

The new method involves piecing together small strands one after the other, so that they attach into a longer DNA strand with the help of an enzyme known as ligase.  A second enzyme, polymerase, is then used to generate many copies of the long DNA strand, yielding larger volumes of the material. The polymerase process has the added advantage of correcting any errors that may have been introduced into the sequence, amplifying only the correctly sequenced, full-length product.

Designer DNA materials

The team used these strands as a scaffold to make DNA nanotubes, demonstrating that the technique allows the length and functions of the tubes to be precisely programmed. “In the end, what we get is a long, synthetic DNA strand with exactly the sequence of bases that we want, and with exactly as many repeat units as we want,” explains Sleiman, who co-authored the study with Graham Hamblin, who recently completed his doctorate, and PhD student Janane Rahbani.

“This work opens the door toward a new design strategy in DNA nanotechnology,” Sleiman says. “This could provide access to designer DNA materials that are economical and can compete with cheaper, but less versatile technologies. In the future, uses could range from customized gene and protein synthesis, to applications in nanoelectronics, nano-optics, and medicine, including diagnosis and therapy.”

Here’s a link to and a citation for the paper,

Sequential growth of long DNA strands with user-defined patterns for nanostructures and scaffolds by Graham D. Hamblin, Janane F. Rahbani, & Hanadi F. Sleiman. Nature Communications 6, Article number: 7065 doi:10.1038/ncomms8065 Published 05 May 2015

This article is behind a paywall.

McGill University (Canada) researchers build DNA nanotubes block by block

McGill University (Montréal, Québec, Canada) researchers have found a new technique for creating DNA (deoxyribonucleic acid) nanotubes according to a Feb. 24, 2015 news item on Azonano,

Researchers at McGill University have developed a new, low-cost method to build DNA nanotubes block by block – a breakthrough that could help pave the way for scaffolds made from DNA strands to be used in applications such as optical and electronic devices or smart drug-delivery systems.

A Feb. 23, 2015 McGill University news release (also on EurekAlert), which originated the news item, describes current practice and the new technique,

Many researchers, including the McGill team, have previously constructed nanotubes using a method that relies on spontaneous assembly of DNA in solution. The new technique, reported today in Nature Chemistry, promises to yield fewer structural flaws than the spontaneous-assembly method. The building-block approach also makes it possible to better control the size and patterns of the DNA structures, the scientists report.

“Just like a Tetris game, where we manipulate the game pieces with the aim of creating a horizontal line of several blocks, we can now build long nanotubes block by block,” said Amani Hariri, a PhD student in McGill’s Department of Chemistry and lead author of the study. “By using a fluorescence microscope we can further visualize the formation of the tubes at each stage of assembly, as each block is tagged with a fluorescent compound that serves as a beacon. We can then count the number of blocks incorporated in each tube as it is constructed.”

This new technique was made possible by the development in recent years of single-molecule microscopy, which enables scientists to peer into the nano-world by turning the fluorescence of individual molecules on and off. (That groundbreaking work won three U.S.- and German-based scientists the 2014 Nobel Prize in Chemistry.)

Hariri’s research is jointly supervised by chemistry professors Gonzalo Cosa and Hanadi Sleiman, who co-authored the new study. Cosa’s research group specializes in single-molecule fluorescence techniques, while Sleiman’s uses DNA chemistry to design new materials for drug delivery and diagnostic tools.

The custom-built assembly technique developed through this collaboration “gives us the ability to monitor the nanotubes as we’re building them, and see their structure, robustness and morphology,” Cosa said.

“We wanted to control the nanotubes’ lengths and features one-by-one,” said Sleiman, who holds the Canada Research Chair in DNA Nanoscience. The resulting “designer nanotubes,” she adds, promise to be far cheaper to produce on a large scale than those created with so-called DNA origami, another innovative technique for using DNA as a nanoscale construction material.

Here’s a link to and a citation for the paper,

Stepwise growth of surface-grafted DNA nanotubes visualized at the single-molecule level by Amani A. Hariri, Graham D. Hamblin, Yasser Gidi, Hanadi F. Sleiman & Gonzalo Cosa. Nature Chemistry (2015) doi:10.1038/nchem.2184 Published online 23 February 2015

This article is behind a paywall.