Tag Archives: Pacific Northwest National Laboratory (PNNL)

Ethical nanobiotechnology

This paper on ethics (aside: I have a few comments after the news release and citation) comes from the US Pacific Northwest National Laboratory (PNNL) according to a July 12, 2023 news item on phys.org,

Prosthetics moved by thoughts. Targeted treatments for aggressive brain cancer. Soldiers with enhanced vision or bionic ears. These powerful technologies sound like science fiction, but they’re becoming possible thanks to nanoparticles.

“In medicine and other biological settings, nanotechnology is amazing and helpful, but it could be harmful if used improperly,” said Pacific Northwest National Laboratory (PNNL) chemist Ashley Bradley, part of a team of researchers who conducted a comprehensive survey of nanobiotechnology applications and policies.

Their research, available in Health Security, works to sum up the very large, active field of nanotechnology in biology applications, draw attention to regulatory gaps, and offer areas for further consideration.

A July 12, 2023 PNNL news release (also on EurekAlert), which originated the news item, delves further into the topic, Note: A link has been removed,

“In our research, we learned there aren’t many global regulations yet,” said Bradley. “And we need to create a common set of rules to figure out the ethical boundaries.”

Nanoparticles, big differences

Nanoparticles are clusters of molecules with different properties than large amounts of the same substances. In medicine and other biology applications, these properties allow nanoparticles to act as the packaging that delivers treatments through cell walls and the difficult to cross blood-brain barrier.

“You can think of the nanoparticles a little bit like the plastic around shredded cheese,” said PNNL chemist Kristin Omberg. “It makes it possible to get something perishable directly where you want it, but afterwards you’ve got to deal with a whole lot of substance where it wasn’t before.”

Unfortunately, dealing with nanoparticles in new places isn’t straightforward. Carbon is pencil lead, nano carbon conducts electricity. The same material may have different properties at the nanoscale, but most countries still regulate it the same as bulk material, if the material is regulated at all.

For example, zinc oxide, a material that was stable and unreactive as a pigment in white paint, is now accumulating in oceans when used as nanoparticles in sunscreen, warranting a call to create alternative reef-safe sunscreens. And although fats and lipids aren’t regulated, the researchers suggest which agencies could weigh in on regulations were fats to become after-treatment byproducts.

The article also inventories national and international agencies, organizations, and governing bodies with an interest in understanding how nanoparticles break down or react in a living organism and the environmental life cycle of a nanoparticle. Because nanobiotechnology spans materials science, biology, medicine, environmental science, and tech, these disparate research and regulatory disciplines must come together, often for the first time—to fully understand the impact on humans and the environment.

Dual use: Good for us, bad for us

Like other quickly growing fields, there’s a time lag between the promise of new advances and the possibilities of unintended uses.

“There were so many more applications than we thought there were,” said Bradley, who collected exciting nanobio examples such as Alzheimer’s treatment, permanent contact lenses, organ replacement, and enhanced muscle recovery, among others.

The article also highlights concerns about crossing the blood-brain barrier, thought-initiated control of computers, and nano-enabled DNA editing where the researchers suggest more caution, questioning, and attention could be warranted. This attention spans everything from deep fundamental research and regulations all the way to what Omberg called “the equivalent of tattoo removal” if home-DNA splicing attempts go south.

The researchers draw parallels to more established fields such as synthetic bio and pharmacology, which offer lessons to be learned from current concerns such as the unintended consequences of fentanyl and opioids. They believe these fields also offer examples of innovative coordination between science and ethics, such as synthetic bio’s IGEM [The International Genetically Engineered Machine competition]—student competition, to think about not just how to create, but also to shape the use and control of new technologies.

Omberg said unusually enthusiastic early reviewers of the article contributed even more potential uses and concerns, demonstrating that experts in many fields recognize ethical nanobiotechnology is an issue to get in front of. “This is a train that’s going. It will be sad if 10 years from now, we haven’t figured how to talk about it.”

Funding for the team’s research was supported by PNNL’s Biorisk Beyond the List National Security Directorate Objective.

Here’s a link to and a citation for the paper,

The Promise of Emergent Nanobiotechnologies for In Vivo Applications and Implications for Safety and Security by Anne M. Arnold, Ashley M. Bradley, Karen L. Taylor, Zachary C. Kennedy, and Kristin M. Omberg. Health Security.Oct 2022.408-423.Published in Volume: 20 Issue 5: October 17, 2022 DOI: https://doi.org/10.1089/hs.2022.0014 Published Online:17 Oct 2022

This paper is open access.

You can find out more about IGEM (The International Genetically Engineered Machine competition) here.

Comments (brief)

It seems a little odd that the news release (“Prosthetics moved by thoughts …”) and the paper both reference neurotechnology without ever mentioning it by name. Here’s the reference from the paper, Note: Links have been removed,

Nanoparticles May Be Developed to Facilitate Cognitive Enhancements

The development and implementation of NPs that enhance cognitive function has yet to be realized. However, recent advances on the micro- and macro-level with neural–machine interfacing provide the building blocks necessary to develop this technology on the nanoscale. A noninvasive brain–computer interface to control a robotic arm was developed by teams at 2 universities.157 A US-based company, Neuralink, [emphasis mine] is at the forefront of implementing implantable, intracortical microelectrodes that provide an interface between the human brain and technology.158,159 Utilization of intracortical microelectrodes may ultimately provide thought-initiated access and control of computers and mobile devices, and possibly expand cognitive function by accessing underutilized areas of the brain.158

Neuralink (founded by Elon Musk) is controversial for its animal testing practices. You can find out more in Björn Ólafsson’s May 30, 2023 article for Sentient Media.

The focus on nanoparticles as the key factor in the various technologies and applications mentioned seems narrow but necessary given the breadth of topics covered in the paper as the authors themselves note in the paper’s abstract,

… In this article, while not comprehensive, we attempt to illustrate the breadth and promise of bionanotechnology developments, and how they may present future safety and security challenges. Specifically, we address current advancements to streamline the development of engineered NPs for in vivo applications and provide discussion on nano–bio interactions, NP in vivo delivery, nanoenhancement of human performance, nanomedicine, and the impacts of NPs on human health and the environment.

They have a good overview of the history and discussions about nanotechnology risks and regulation. It’s international in scope with a heavy emphasis on US efforts, as one would expect.

For anyone who’s interested in the neurotechnology end of things, I’ve got a July 17, 2023 commentary “Unveiling the Neurotechnology Landscape: Scientific Advancements, Innovations and Major Trends—a UNESCO report.” The report was launched July 13, 2023 during UNESCO’s Global dialogue on the ethics of neurotechnology (see my July 7, 2023 posting about the then upcoming dialogue for links to more UNESCO information). Both the July 17 and July 7, 2023 postings included additional information about Neuralink.

A cluster of golden nanoscale stars

A bio-inspired molecule that directs gold atoms to form perfect nanoscale stars? According to a March 30, 2022 news item on Nanowerk, that’s exactly what researchers have done (Note: Links have been removed),

Researchers from Pacific Northwest National Laboratory (PNNL) and the University of Washington (UW) have successfully designed a bio-inspired molecule that can direct gold atoms to form perfect nanoscale stars.

The work (Angewandte Chemie, “Peptoid-Directed Formation of Five-Fold Twinned Au Nanostars through Particle Attachment and Facet Stabilization”) is an important step toward understanding and controlling metal nanoparticle shape and creating advanced materials with tunable properties.

Artistic rendering of gold star assembly. Credit: Biao Jin Courtesy: University of Washington

I do love the fanciful addition of a panda to the proceedings. Thank you Biao Jin.

A March 29, 2022 University of Washington news release (also on EurekAlert but published on March 30, 2022), which originated the news item, provides more detail about the research,

Metallic nanomaterials have interesting optical properties, called plasmonic properties, says Chun-Long Chen, who is a PNNL senior research scientist, UW affiliate professor of chemical engineering and of chemistry, and UW–PNNL Faculty Fellow. In particular, star-shaped metallic nanomaterials are already known to exhibit unique enhancements that are useful for sensing and the detection of pathogenic bacteria, among other national security and health applications.

To create these striking nanoparticles, the team carefully tuned sequences of peptoids, a type of programmable protein-like synthetic polymer. “Peptoids offer a unique advantage in achieving molecular-level controls,” says Chen. In this case, the peptoids guide small gold particles to attach and relax to form larger five-fold twinned ones, while also stabilizing the facets of the crystal structure. Their approach was inspired by nature, where proteins can control the creation of materials with advanced functionalities.

Jim De Yoreo and Biao Jin used advanced in situ transmission electron microscopy (TEM) to “see” the stars’ formation in solution at the nanoscale. The technique both provided an in-depth mechanistic understanding of how peptoids guide the process and revealed the roles of particle attachment and facet stabilization in controlling shape. De Yoreo is a Battelle Fellow at PNNL and affiliate professor of materials science and engineering at UW, and Jin is a postdoctoral research associate at PNNL.

Having assembled their nanoscale constellation, the researchers then employed molecular dynamics simulations to capture a level of detail that can’t be gleaned from experiments — and to illuminate why specific peptoids controlled the formation of the perfect stars. Xin Qi, a chemical engineering postdoctoral researcher in professor Jim Pfaendtner’s group, led this work at UW. Qi used UW’s Hyak supercomputer cluster to model interfacial phenomena between several different peptoids and particle surfaces.

The simulations play a critical role in learning how to design plasmonic nanomaterials that absorb and scatter light in unique ways. “You need to have a molecular-level understanding to form this nice star-shaped particle with interesting plasmonic properties,” said Chen. Simulations can build the theoretical understanding around why certain peptoids create certain shapes.

The researchers are working toward a future where simulations guide experimental design, in a cycle the team hopes will lead to predictive synthesis of nanomaterials with desired plasmonic enhancements. In this aspect, they would like to first use computational tools to identify peptoid side chains and sequences with desired facet selectivity. Then they would employ state-of-art in situ imaging techniques, such as liquid-cell TEM [transmission electron microscope], to monitor the direct facet expression, stabilization, and particle attachment. In other words, Chen says, “If someone can tell us that a structure of plasmonic nanomaterials has interesting optical properties, can we use a peptoid-based approach to predictably make that?”

Though they’re not to that point, this successful experimental–computational work certainly gets them closer. Further, the team’s ability to synthesize nice star shapes consistently is an important step; more-homogeneous particles translate into more-predictable optical properties.

Here’s a link to and a citation for the paper,

Peptoid-Directed Formation of Five-Fold Twinned Au Nanostars through Particle Attachment and Facet Stabilization by Biao Jin, Feng Yan, Xin Qi, Bin Cai, Jinhui Tao, Xiaofeng Fu, Susheng Tan, Peijun Zhang, Jim Pfaendtner, Nada Y. Naser, François Baneyx, Xin Zhang, James J. DeYoreo, Chun-Long Chen. Angewandte Chemie DOI: https://doi.org/10.1002/anie.202201980 First published: 15 February 2022

This paper is open access.

Nanoflowers for better drug delivery; researchers looking for commercial partners

Caption: Schematic representation of the movement of the flower-like particle as it makes its way through a cellular trap to deliver therapeutic genes. Credit: WSU [Washington State University]

It looks more like a swimming pool with pool toys to me but I imagine that nobody wants to say that they’re sending ‘pool toys’ through your bloodstream. Nanoflowers or flower-shaped nanoparticles sounds nicer.

From a January 10, 2019 news item on Nanowerk,

Washington State University [WSU] researchers have developed a novel way to deliver drugs and therapies into cells at the nanoscale without causing toxic effects that have stymied other such efforts.

The work could someday lead to more effective therapies and diagnostics for cancer and other illnesses.

Led by Yuehe Lin, professor in WSU’s School of Mechanical and Materials Engineering, and Chunlong Chen, senior scientist at the Department of Energy’s Pacific Northwest National Laboratory (PNNL), the research team developed biologically inspired materials at the nanoscale that were able to effectively deliver model therapeutic genes into tumor cells. …

A January 10, 2019 WSU news release (also on EurekAlert) by Tina Hilding, which originated the news item, describes the work in greater detail,

Researchers have been working to develop nanomaterials that can effectively carry therapeutic genes directly into the cells for the treatment of diseases such as cancer. The key issues for gene delivery using nanomaterials are their low delivery efficiency of medicine and potential toxicity.

“To develop nanotechnology for medical purposes, the first thing to consider is toxicity — That is the first concern for doctors,” said Lin.

The flower-like particle the WSU and PNNL team developed is about 150 nanometers in size, or about one thousand times smaller than the width of a piece of paper. It is made of sheets of peptoids, which are similar to natural peptides that make up proteins. The peptoids make for a good drug delivery particle because they’re fairly easy to synthesize and, because they’re similar to natural biological materials, work well in biological systems.

The researchers added fluorescent probes in their peptoid nanoflowers, so they could trace them as they made their way through cells, and they added the element fluorine, which helped the nanoflowers more easily escape from tricky cellular traps that often impede drug delivery.

The flower-like particles loaded with therapeutic genes were able to make their way smoothly out of the predicted cellular trap, enter the heart of the cell, and release their drug there.

“The nanoflowers successfully and rapidly escaped (the cell trap) and exhibited minimal cytotoxicity,” said Lin.

After their initial testing with model drug molecules, the researchers hope to conduct further studies using real medicines.

“This paves a new way for us to develop nanocargoes that can efficiently deliver drug molecules into the cell and offers new opportunities for targeted gene therapies,” he said.

The WSU and PNNL team have filed a patent application for the new technology, and they are seeking industrial partners for further development.

Should you and your company be interested in partnering with the researchers, contact:

  • Yuehe Lin, professor, School of Mechanical and Materials Engineering, 509‑335‑8523, yuehe.lin@wsu.edu
  • Tina Hilding, communications director, Voiland College of Engineering and Architecture, 509‑335‑5095, thilding@wsu.edu

For those who’d like more information, here’s a link to and a citation for the paper,

Efficient Cytosolic Delivery Using Crystalline Nanoflowers Assembled from Fluorinated Peptoids by Yang Song, Mingming Wang, Suiqiong Li, Haibao Jin, Xiaoli Cai, Dan Du, He Li, Chun‐Long Chen, Yuehe Lin. Small DOI: https://doi.org/10.1002/smll.201803544 First published: 22 November 2018

This paper is behind a paywall.

Using light to make gold crystal nanoparticles

Gold crystal nanoparticles? Courtesy: University of Florida

Gold crystal nanoparticles? Courtesy: University of Florida

A team from the University of Florida has used gold instead of silver in a process known as plasmon-driven synthesis. From a July 8, 2016 news item on phys.org,

A team of University of Florida researchers has figured out how gold can be used in crystals grown by light to create nanoparticles, a discovery that has major implications for industry and cancer treatment and could improve the function of pharmaceuticals, medical equipment and solar panels.

A July 6, 2016 University of Florida news release, which originated the news item, provides more detail,

Nanoparticles can be “grown” in crystal formations with special use of light, in a process called plasmon-driven synthesis. However, scientists have had limited control unless they used silver, but silver limits the uses for medical technology. The team is the first to successfully use gold, which works well within the human body, with this process.

“How does light actually play a role in the synthesis? [This knowledge] was not well developed,” said David Wei, an associate professor of chemistry who led the research team. “Gold was the model system to demonstrate this.”

Gold is highly desired for nanotechnology because it is malleable, does not react with oxygen and conducts heat well. Those properties make gold an ideal material for nanoparticles, especially those that will be placed in the body.

When polyvinylpyrrolidone, or PVP, a substance commonly found in pharmaceutical tablets, is used in the plasmon-driven synthesis, it enables scientists to better control the growth of crystals. In Wei’s research, PVP surprised the team by showing its potential to relay light-generated “hot” electrons to a gold surface to grow the crystals.

The research describes the first plasmonic synthesis strategy that can make high-yield gold nanoprisms. Even more exciting, the team has demonstrated that visible-range and low-power light can be used in the synthesis. Combined with nanoparticles being used in solar photovoltaic devices, this method can even harness solar energy for chemical synthesis, to make nanomaterials or for general applications in chemistry.

Wei has spent the last decade working in nanotechnology. He is intrigued by its applications in photochemistry and biomedicine, especially in targeted drug delivery and photothermal therapeutics, which is crucial to cancer treatment. His team includes collaborators from Pacific Northwest National Laboratory, where he has worked as a visiting scholar, and Brookhaven National Laboratory. In addition, the project has provided an educational opportunity for chemistry students: one high school student (through UF’s Student Science Training Program), two University scholars who also [sic] funded by the Howard Hughes Medical Institute, five graduate students and two postdocs.

Here’s a link to and a citation for the paper,

Polyvinylpyrrolidone-induced anisotropic growth of gold nanoprisms in plasmon-driven synthesis by Yueming Zhai, Joseph S. DuChene, Yi-Chung Wang, Jingjing Qiu, Aaron C. Johnston-Peck, Bo You, Wenxiao Guo, Benedetto DiCiaccio, Kun Qian, Evan W. Zhao, Frances Ooi, Dehong Hu, Dong Su, Eric A. Stach, Zihua Zhu, & Wei David Wei. Nature Materials (2016) doi:10.1038/nmat4683 Published online 04 July 2016

This paper is behind a paywall.

Cleaning up nuclear waste gases with nanotechnology-enabled materials

Swiss and US scientists have developed a nanoporous crystal that could be used to clean up nuclear waste gases according to a June 13, 2016 news item on Nanowerk (Note: A link has been removed),

An international team of scientists at EPFL [École polytechnique fédérale de Lausanne in Switzerland] and the US have discovered a material that can clear out radioactive waste from nuclear plants more efficiently, cheaply, and safely than current methods.

Nuclear energy is one of the cheapest alternatives to carbon-based fossil fuels. But nuclear-fuel reprocessing plants generate waste gas that is currently too expensive and dangerous to deal with. Scanning hundreds of thousands of materials, scientists led by EPFL and their US colleagues have now discovered a material that can absorb nuclear waste gases much more efficiently, cheaply and safely. The work is published in Nature Communications (“Metal–organic framework with optimally selective xenon adsorption and separation”).

A June 14, 2016 EPFL press release (also on EurekAlert), which originated the news item, explains further,

Nuclear-fuel reprocessing plants generate volatile radionuclides such as xenon and krypton, which escape in the so-called “off-gas” of these facilities – the gases emitted as byproducts of the chemical process. Current ways of capturing and clearing out these gases involve distillation at very low temperatures, which is expensive in both terms of energy and capital costs, and poses a risk of explosion.

Scientists led by Berend Smit’s lab at EPFL (Sion) and colleagues in the US, have now identified a material that can be used as an efficient, cheaper, and safer alternative to separate xenon and krypton – and at room temperature. The material, abbreviated as SBMOF-1, is a nanoporous crystal and belongs a class of materials that are currently used to clear out CO2 emissions and other dangerous pollutants. These materials are also very versatile, and scientists can tweak them to self-assemble into ordered, pre-determined crystal structures. In this way, they can synthesize millions of tailor-made materials that can be optimized for gas storage separation, catalysis, chemical sensing and optics.

The scientists carried out high-throughput screening of large material databases of over 125,000 candidates. To do this, they used molecular simulations to find structures that can separate xenon and krypton, and under conditions that match those involved in reprocessing nuclear waste.

Because xenon has a much shorter half-life than krypton – a month versus a decade – the scientists had to find a material that would be selective for both but would capture them separately. As xenon is used in commercial lighting, propulsion, imaging, anesthesia and insulation, it can also be sold back into the chemical market to offset costs.

The scientists identified and confirmed that SBMOF-1 shows remarkable xenon capturing capacity and xenon/krypton selectivity under nuclear-plant conditions and at room temperature.

The US partners have also made an announcement with this June 13, 2016 Pacific Northwest National Laboratory (PNNL) news release (also on EurekAlert), Note: It is a little repetitive but there’s good additional information,

Researchers are investigating a new material that might help in nuclear fuel recycling and waste reduction by capturing certain gases released during reprocessing. Conventional technologies to remove these radioactive gases operate at extremely low, energy-intensive temperatures. By working at ambient temperature, the new material has the potential to save energy, make reprocessing cleaner and less expensive. The reclaimed materials can also be reused commercially.

Appearing in Nature Communications, the work is a collaboration between experimentalists and computer modelers exploring the characteristics of materials known as metal-organic frameworks.

“This is a great example of computer-inspired material discovery,” said materials scientist Praveen Thallapally of the Department of Energy’s Pacific Northwest National Laboratory. “Usually the experimental results are more realistic than computational ones. This time, the computer modeling showed us something the experiments weren’t telling us.”

Waste avoidance

Recycling nuclear fuel can reuse uranium and plutonium — the majority of the used fuel — that would otherwise be destined for waste. Researchers are exploring technologies that enable safe, efficient, and reliable recycling of nuclear fuel for use in the future.

A multi-institutional, international collaboration is studying materials to replace costly, inefficient recycling steps. One important step is collecting radioactive gases xenon and krypton, which arise during reprocessing. To capture xenon and krypton, conventional technologies use cryogenic methods in which entire gas streams are brought to a temperature far below where water freezes — such methods are energy intensive and expensive.

Thallapally, working with Maciej Haranczyk and Berend Smit of Lawrence Berkeley National Laboratory [LBNL] and others, has been studying materials called metal-organic frameworks, also known as MOFs, that could potentially trap xenon and krypton without having to use cryogenics.

These materials have tiny pores inside, so small that often only a single molecule can fit inside each pore. When one gas species has a higher affinity for the pore walls than other gas species, metal-organic frameworks can be used to separate gaseous mixtures by selectively adsorbing.

To find the best MOF for xenon and krypton separation, computational chemists led by Haranczyk and Smit screened 125,000 possible MOFs for their ability to trap the gases. Although these gases can come in radioactive varieties, they are part of a group of chemically inert elements called “noble gases.” The team used computing resources at NERSC, the National Energy Research Scientific Computing Center, a DOE Office of Science User Facility at LBNL.

“Identifying the optimal material for a given process, out of thousands of possible structures, is a challenge due to the sheer number of materials. Given that the characterization of each material can take up to a few hours of simulations, the entire screening process may fill a supercomputer for weeks,” said Haranczyk. “Instead, we developed an approach to assess the performance of materials based on their easily computable characteristics. In this case, seven different characteristics were necessary for predicting how the materials behaved, and our team’s grad student Cory Simon’s application of machine learning techniques greatly sped up the material discovery process by eliminating those that didn’t meet the criteria.”

The team’s models identified the MOF that trapped xenon most selectively and had a pore size close to the size of a xenon atom — SBMOF-1, which they then tested in the lab at PNNL.

After optimizing the preparation of SBMOF-1, Thallapally and his team at PNNL tested the material by running a mixture of gases through it — including a non-radioactive form of xenon and krypton — and measuring what came out the other end. Oxygen, helium, nitrogen, krypton, and carbon dioxide all beat xenon out. This indicated that xenon becomes trapped within SBMOF-1’s pores until the gas saturates the material.

Other tests also showed that in the absence of xenon, SBMOF-1 captures krypton. During actual separations, then, operators would pass the gas streams through SBMOF-1 twice to capture both gases.

The team also tested SBMOF-1’s ability to hang onto xenon in conditions of high humidity. Humidity interferes with cryogenics, and gases must be dehydrated before putting them through the ultra-cold method, another time-consuming expense. SBMOF-1, however, performed quite admirably, retaining more than 85 percent of the amount of xenon in high humidity as it did in dry conditions.

The final step in collecting xenon or krypton gas would be to put the MOF material under a vacuum, which sucks the gas out of the molecular cages for safe storage. A last laboratory test examined how stable the material was by repeatedly filling it up with xenon gas and then vacuuming out the xenon. After 10 cycles of this, SBMOF-1 collected just as much xenon as the first cycle, indicating a high degree of stability for long-term use.

Thallapally attributes this stability to the manner in which SBMOF-1 interacts with xenon. Rather than chemical reactions between the molecular cages and the gases, the relationship is purely physical. The material can last a lot longer without constantly going through chemical reactions, he said.

A model finding

Although the researchers showed that SBMOF-1 is a good candidate for nuclear fuel reprocessing, getting these results wasn’t smooth sailing. In the lab, the researchers had followed a previously worked out protocol from Stony Brook University to prepare SBMOF-1. Part of that protocol requires them to “activate” SBMOF-1 by heating it up to 300 degrees Celsius, three times the temperature of boiling water.

Activation cleans out material left in the pores from MOF synthesis. Laboratory tests of the activated SBMOF-1, however, showed the material didn’t behave as well as it should, based on the computer modeling results.

The researchers at PNNL repeated the lab experiments. This time, however, they activated SBMOF-1 at a lower temperature, 100 degrees Celsius, or the actual temperature of boiling water. Subjecting the material to the same lab tests, the researchers found SBMOF-1 behaving as expected, and better than at the higher activation temperature.

But why? To figure out where the discrepancy came from, the researchers modeled what happened to SBMOF-1 at 300 degrees Celsius. Unexpectedly, the pores squeezed in on themselves.

“When we heated the crystal that high, atoms within the pore tilted and partially blocked the pores,” said Thallapally. “The xenon doesn’t fit.”

Armed with these new computational and experimental insights, the researchers can explore SBMOF-1 and other MOFs further for nuclear fuel recycling. These MOFs might also be able to capture other noble gases such as radon, a gas known to pool in some basements.

Researchers hailed from several other institutions as well as those listed earlier, including University of California, Berkeley, Ecole Polytechnique Fédérale de Lausanne (EPFL) in Switzerland, Brookhaven National Laboratory, and IMDEA Materials Institute in Spain. This work was supported by the [US] Department of Energy Offices of Nuclear Energy and Science.

Here’s an image the researchers have provided to illustrate their work,

Caption: The crystal structure of SBMOF-1 (green = Ca, yellow = S, red = O, gray = C, white = H). The light blue surface is a visualization of the one-dimensional channel that SBMOF-1 creates for the gas molecules to move through. The darker blue surface illustrates where a Xe atom sits in the pores of SBMOF-1 when it adsorbs. Credit: Berend Smit/EPFL/University of California Berkley

Caption: The crystal structure of SBMOF-1 (green = Ca, yellow = S, red = O, gray = C, white = H). The light blue surface is a visualization of the one-dimensional channel that SBMOF-1 creates for the gas molecules to move through. The darker blue surface illustrates where a Xe atom sits in the pores of SBMOF-1 when it adsorbs. Credit: Berend Smit/EPFL/University of California Berkley

Here’s a link to and a citation for the paper,

Metal–organic framework with optimally selective xenon adsorption and separation by Debasis Banerjee, Cory M. Simon, Anna M. Plonka, Radha K. Motkuri, Jian Liu, Xianyin Chen, Berend Smit, John B. Parise, Maciej Haranczyk, & Praveen K. Thallapally. Nature Communications 7, Article number: ncomms11831  doi:10.1038/ncomms11831 Published 13 June 2016

This paper is open access.

Final comment, this is the second time in the last month I’ve stumbled across more positive approaches to nuclear energy. The first time was a talk (Why Nuclear Power is Necessary) held in Vancouver, Canada in May 2016 (details here). I’m not trying to suggest anything unduly sinister but it is interesting since most of my adult life nuclear power has been viewed with fear and suspicion.

MOFs (metal-organic frameworks) to clean up nuclear waste?

There’s a possibility that metal-organic frameworks could be used to clean up nuclear waste according to an Aug. 5, 2015 news item on phys.org,

One of the most versatile and widely applicable classes of materials being studied today are the metal-organic frameworks. These materials, known as MOFs, are characterized by metal ions or metal-ion clusters that are linked together with organic molecules, forming ordered crystal structures that contain tiny cage-like pores with diameters of two nanometers or less.

MOFs can be thought of as highly specialized and customizable sieves. By designing them with pores of a certain size, shape, and chemical composition, researchers can tailor them for specific purposes. A few of the many, many possible applications for MOFs are storing hydrogen in fuel cells, capturing environmental contaminants, or temporarily housing catalytic agents for chemical reactions.

At [US Department of Energy] Brookhaven National Laboratory, physicist Sanjit Ghose and his collaborators have been studying MOFs designed for use in the separation of waste from nuclear reactors, which results from the reprocessing of nuclear fuel rods. He is targeting two waste products in particular: the noble gases xenon (Xe) and krypton (Kr).

An Aug. 4, 2015 Brookhaven National Laboratory news release, which originated the news item, describes not only the research and the reasons for it but also the institutional collaborations necessary to conduct the research,

There are compelling economic and environmental reasons to separate Xe and Kr from the nuclear waste stream. For one, because they have very different half-lives – about 36 days for Xe and nearly 11 years for Kr – pulling out the Xe greatly reduces the amount of waste that needs to be stored long-term before it is safe to handle. Additionally, the extracted Xe can be used for industrial applications, such as in commercial lighting and as an anesthetic. This research may also help scientists determine how to create MOFs that can remove other materials from the nuclear waste stream and expose the remaining unreacted nuclear fuel for further re-use. This could lead to much less overall waste that must be stored long-term and a more efficient system for producing nuclear energy, which is the source of about 20 percent of the electricity in the U.S.

Because Xe and Kr are noble gases, meaning their outer electron orbitals are filled and they don’t tend to bind to other atoms, they are difficult to manipulate. The current method for extracting them from the nuclear waste stream is cryogenic distillation, a process that is energy-intensive and expensive. The MOFs studied here use a very different approach: polarizing the gas atoms dynamically, just enough to draw them in using the van der Waals force. The mechanism works at room temperature, but also at hotter temperatures, which is key if the MOFs are to be used in a nuclear environment.

Recently, Ghose co-authored two papers that describe MOFs capable of adsorbing Xe and Kr, and excel at separating the Xe from the Kr. The papers are published in the May 22 online edition of the Journal of the American Chemical Society and the April 16 online edition of the Journal of Physical Chemistry Letters.

“Only a handful of noble-gas-specific MOFs have been studied so far, and we felt there was certainly scope for improvement through the discovery of more selective materials,” said Ghose.

Both MOF studies were carried out by large multi-institution collaborations, using a combination of X-ray diffraction, theoretical modeling, and other methods. The X-ray work was performed at Brookhaven’s former National Synchrotron Light Source (permanently closed and replaced by its successor, NSLS-II) and the Advanced Photon Source at Argonne National Laboratory (ANL), both DOE Office of Science User Facilities.

The JACS paper was co-authored by researchers from Brookhaven Lab, Stony Brook University (SBU), Pacific Northwest National Laboratory (PNNL), and the University of Amsterdam. Authors on the JPCL paper include scientists from Brookhaven, SBU, PNNL, ANL, the Deutsches Elektronen-Synchrotron (DESY) in Germany, and DM Strachan, LLC.

Here’s more about the first published paper in the Journal of Physical Chemistry Letters (JCPL) (from the news release)

A nickel-based MOF

The MOF studied in the JCPL paper consists of nickel (Ni) and the organic compound dioxido-benzene-dicarboxylate (DOBC), and is thus referred to as Ni-DOBDC. Ni-DOBDC can adsorb both Xe and Kr at room temperature but is highly selective toward Xe. In fact, it boasts what may be the highest Xe adsorption capacity of a MOF discovered to date.

The group studied Ni-DOBC using two main techniques: X-ray diffraction and first-principles density functional theory (DFT). The paper is the first published report to detail the adsorption mechanism by which the MOF takes in these noble gases at room temperature and pressure.

“Our results provide a fundamental understanding of the adsorption structure and the interactions between the MOF and the gas by combining direct structural analyses from experimental X-ray diffraction data and DFT calculations,” said Ghose.

The group was also able to discover the existence of a secondary site at the pore center in addition to the six-fold primary site. The seven-atom loading scheme was initially proposed by theorist Yan Li, an co-author of the JCPL paper and formerly on staff at Brookhaven (she is now an editor at Physical Review B), which was confirmed experimentally and theoretically. Data also indicate that Xe are adsorbed more strongly than Kr, due to its higher atomic polarizability. They also discovered a temperature-dependence of the adsorption that furthers this MOF’s selectivity for Xe over Kr. As the temperature was increased above room temperature, the Kr adsorption drops more drastically than for Xe. Over the entire temperature range tested, Xe adsorption always dominates that of Kr.

“The high separation capacity of Ni-DOBDC suggests that it has great potential for removing Xe from Kr in the off-gas streams in nuclear spent fuel reprocessing, as well as filtering Xe at low concentration from other gas mixtures,” said Ghose.

Ghose and Li are now preparing a manuscript that will discuss a more in-depth investigation into the possibility of packing in even more Xe atoms.

“Because of the confinement offered by each pore, we want to see if it’s possible to fit enough Xe in each chamber to form a solid,” said Li.

Ghose and Li hope to experimentally test this idea at NSLS-II in the future, at the facility’s X-ray Powder Diffraction (XPD) beamline, which Ghose has helped develop and build. Additional future studies of these and other MOFs will also take place at XPD. For example, they want to see what happens when other gases are present, such as nitrogen oxides, to mimic what happens in an actual nuclear reactor.

Then, there was the second paper published in the Journal of the American Chemical Society (JACS),

Another MOF, Another Promising Result

In the JACS paper, Ghose and researchers from Brookhaven, SBU, PNNL, and the University of Amsterdam describe a second MOF, dubbed Stony Brook MOF-2 (SBMOF-2). It also captures both Xe and Kr at room temperature and pressure, although is about ten times as effective at taking in Xe, with Xe taking up as much as 27 percent of its weight. SBMOF-2 had been theoretically predicted to be an efficient adsorbent for Xe and Kr, but until this research there had been no experimental results to back up the prediction.

“Our study is different than MOF research done by other groups,” said chemist John Parise, a coauthor of the JACS paper who holds a joint position with Brookhaven and SBU. “We did a lot of testing and investigated the capture mechanism very closely to get clues that would help us understand why the MOF worked, and how to tailor the structure to have even better properties.”

SBMOF-2 contains calcium (Ca) ions and an organic compound with the chemical formula C34H22O8. X-ray data show that its structure is unusual among microporous MOFs. It has fewer calcium sites than expected and an excess of oxygen over calcium. The calcium and oxgyen form CaO6, which takes the form of a three-dimensional octahedron. Notably, none of the six oxygen atoms bound to the calcium ion are shared with any other nearby calcium ions. The authors believe that SBMOF-2 is the first microporous MOF with these isolated CaO6 octahedra, which are connected by organic linker molecules.

The group discovered that the preference of SBMOF-2 for Xe over Kr is due to both the geometry and chemistry of its pores. All the pores have diamond-shaped cross sections, but they come in two sizes, designated type-1 and type-2. Both sizes are a better fit for the Xe molecule. The interiors of the pores have walls made of phenyl groups – ring-shaped C6H5 molecules – along with delocalized electron clouds and H atoms pointing into the pore. The type-2 pores also have hydroxyl anions (OH-) available. All of these features provide are potential sites for adsorbed Xe and Kr atoms.

In follow-up studies, Ghose and his colleagues will use these results to guide them as they determine what changes can be made to these MOFs to improve adsorption, as well as to determine what existing MOFs may yield similar or better performance.

Here are links to and citations for both papers,

Understanding the Adsorption Mechanism of Xe and Kr in a Metal–Organic Framework from X-ray Structural Analysis and First-Principles Calculations by Sanjit K. Ghose, Yan Li, Andrey Yakovenko, Eric Dooryhee, Lars Ehm, Lynne E. Ecker, Ann-Christin Dippel, Gregory J. Halder, Denis M. Strachan, and Praveen K. Thallapally. J. Phys. Chem. Lett., 2015, 6 (10), pp 1790–1794 DOI: 10.1021/acs.jpclett.5b00440 Publication Date (Web): April 16, 2015

Copyright © 2015 American Chemical Society

Direct Observation of Xe and Kr Adsorption in a Xe-Selective Microporous Metal–Organic Framework by Xianyin Chen, Anna M. Plonka, Debasis Banerjee, Rajamani Krishna, Herbert T. Schaef, Sanjit Ghose, Praveen K. Thallapally, and John B. Parise. J. Am. Chem. Soc., 2015, 137 (22), pp 7007–7010 DOI: 10.1021/jacs.5b02556 Publication Date (Web): May 22, 2015
Copyright © 2015 American Chemical Society

Both papers are behind a paywall.