Posts Tagged ‘Pasco Phronesis’

Science rap: a Kickstarter project and a PBS (US Public Broadcasting Service) News Hour contest

Thursday, March 28th, 2013

I can’t resist the science rap stories David Bruggeman has been highlighting on his Pascro Phronesis blog. In his Mar. 26, 2013 posting, David provides some scoop about Tom McFadden’s Kickstarter project, Battle Rap Histories of Epic Science (Brahe’s Battles),

After Fulbright work in New Zealand and similar efforts in other countries, McFadden is back in the San Francisco area helping middle school students develop raps for science debates.  The project is called “Battle Rap Histories of Epic Science” (BRAHE’S Battles) and if fully funded, it would support video production for battle raps on various scientific debates in five schools.

McFadden was mentioned here previously in my Nov. 30, 2012 posting which in the context of a digital storytelling webcast (scroll down 1/2 way),

… a Fulbrighter and former Stanford University biology course instructor who became a Science Rapper.  Tom emerged from the California BioPop scene with hit singles such as, “Regulatin’ Genes” and “Oxidate it or Love it,” …

Here’s McFadden’s Kickstarter promotional video (I almost embedded another video here but the Rosalind Franklin reference in first rap won me over unequivocally),

McFadden needs approximately $11,900 total to reach his goal. There are 19 days left for the campaign and $4,783 has been raised. This looks like a great project especially given McFadden’s track record. For the curious, here are some of the incentives being offered,

Pledge $10 or more

MP3 DIGITAL DOWNLOAD. Get an audio download of the “Brahe’s Battle” song of your choice when audio production is completed.

Estimated delivery: May 2013

Pledge $35 or more

THE RYMEBOSOME MIXTAPE: Get a digital download of the “Rhymebosome mixtape”. This includes all 5 mp3s from the Brahe’s Battles project, and almost every science song Tom McFadden has ever created (including hits like “Fossil Rock Anthem”, “Regulatin’ Genes”).

Estimated delivery: May 2013

Pledge $150 or more

YOUR NAME “BEASTIE RAPPED”: Have your name (or the name of your choice) “beastie rapped” by the stars of ‘Brahe’s Battles. (This is rhyming game I play with all the kids where we finish each others rhymes. It was shown briefly in the intro video rhyming with the name “Crick”). We will email you the video as a keepsake! (Includes $50 reward)

Estimated delivery: June 2013

There are lots of choices left including an option for a 20 min. Google hang out with Tom McFadden, an option to commission a song on a topic of your choosing (audio only), or you can choose a Platinum package for $1500 which provides most of these options. If you want to check out McFadden further, there’s his own website, The Rhymebosome.

As for the second project (science rap contest), David sets the stage by noting some history, from his Mar. 27, 2013 posting,

While East Coast and West Coast rappers (in)famously had beef back in the 90s, East Coast and West Coast science rappers have nothing but love.

He then proceeds to detail a science rap project which has its roots on the US East Coast (Note: Links have been removed),

 Chris Emdin, you may recall, is the education professor at Teacher’s College at Columbia working with GZA on Science Genius, a rap education project formatted roughly similar to what Tom McFadden is working on in the Bay Area.

Science Genius, Emdin and GZA were featured in tonight’s edition of PBS Newshour.  GZA even drops a little taste of his upcoming science-influenced album.

David features a video of the PBS segment and more information about the project in his posting. You can also visit the PBS News Hour website here for details about the contest,

Create Your Own Science Rap

Enter your own science rap or hip-hop verse for a chance to win a PBS NewsHour mug signed by GZA of the Wu-Tang Clan along with a personal video shout-out from the rap legend himself. Our contest is modeled after the Science Genius competition, a partnership between GZA, Christopher Emdin and Rap Genius. Entries will be judged by Emdin and two of his Columbia University Teachers College graduate students.

Here are the competition guidelines,

Competition guidelines:

  • Entries must incorporate at least one scientific topic/concept into 16 bars of verse. (16 bars is the length of a traditional verse, and a bar is made up of beats of four.)
  • The main topic/concept of the rap must be referenced in different ways at least three times in the verse.
  • Be creative in your expression of the science (E.g.: envision yourself either as somebody involved in the scientific process or an object undergoing the scientific process. Draw connections between your real world experiences and the concepts themselves.)
  • Information must be scientifically accurate and verifiable.
  • Lyrics must rhyme, and incorporate metaphor/analogy
  • Entries are due by Friday, May 3. [emphasis mine]

There’s more information either in David’s posting or on the PBS News Hour website.

Good luck to McFadden and to the science rap competitors in the PBS News Hour contest.

FrogHeart’s 2012, a selective roundup of my international online colleagues, and other bits

Monday, December 31st, 2012

This blog will be five years old in April 2013 and, sometime in January or February, the 2000th post will be published.

Statisticswise it’s been a tumultuous year for FrogHeart with ups and downs,  thankfully ending on an up note. According to my AW stats, I started with 54,920 visits in January (which was a bit of an increase over December 2011. The numbers rose right through to March 2012 when the blog registered 68,360 visits and then the numbers fell and continued to fall. At the low point, this blog registered 45, 972 visits in June 2012 and managed to rise and fall through to Oct. 2012 when the visits rose to 54,520 visits. November 2012 was better with 66,854 visits and in December 2012 the blog will have received over 75,000 visits. (ETA Ja.2.13: This blog registered 81,0036 in December 2012 and an annual total of 681,055 visits.) Since I have no idea why the numbers fell or why they rose again, I have absolutely no idea what 2013 will bring in terms of statistics (the webalizer numbers reflect similar trends).

Interestingly and for the first time since I’ve activated the AW statistics package in Feb. 2009, the US ceased to be the primary source for visitors. As of April 2012, the British surged ahead for several months until November 2012 when the US regained the top spot only to lose it to China in December 2012.

Favourite topics according to the top 10 key terms included: nanocrystalline cellulose for Jan. – Oct. 2012 when for the first time in almost three years the topic fell out of the top 10; Jackson Pollock and physics also popped up in the top 10 in various months throughout the year; Clipperton Island (a sci/art project) has made intermittent appearances; SPAUN (Semantic Pointer Arichitecture Unified Network; a project at the University of Waterloo) has made the top 10 in the two months since it was announced); weirdly, frogheart.ca has appeared in the top 10 these last few months; the Lycurgus Cup, nanosilver, and literary tattoos also made appearances in the top 10 in various months throughout the year, while the memristor and Québec nanotechnology made appearances in the fall.

Webalizer tells a similar but not identical story. The numbers started with 83, 133 visits in January 2012 rising to a dizzying height of 119, 217 in March.  These statistics fell too but July 2012 was another six figure month with 101,087 visits and then down again to five figures until Oct. 2012 with 108, 266 and 136,161 visits in November 2012. The December 2012 visits number appear to be dipping down slightly with 130,198 visits counted to 5:10 am PST, Dec. 31, 2012. (ETA Ja.2.13: In December 2012, 133,351 were tallied with an annual total of 1,660,771 visits.)

Thanks to my international colleagues who inspire and keep me apprised of the latest information on nanotechnology and other emerging technologies:

  • Pasco Phronesis, owned by David Bruggeman, focuses more on science policy and science communicati0n (via popular media) than on emerging technology per se but David provides excellent analysis and a keen eye for the international scene. He kindly dropped by frogheart.ca  some months ago to challenge my take on science and censorship in Canada and I have not finished my response. I’ve posted part 1 in the comments but have yet to get to part 2. His latest posting on Dec. 30, 2012 features this title, For Better Science And Technology Policing, Don’t Forget The Archiving.
  • Nanoclast is on the IEEE (Institute of Electrical and Electronics Engineers) website and features Dexter Johnson’s writing on nanotechnology government initiatives, technical breakthroughs, and, occasionally, important personalities within the field. I notice Dexter, who’s always thoughtful and thought-provoking, has cut back to a weekly posting. I encourage you to read his work as he fills in an important gap in a lot of nanotechnology reporting with his intimate understanding of the technology itself.  Dexter’s Dec. 20, 2012 posting (the latest) is titled, Nanoparticle Coated Lens Converts Light into Sound for Precise Non-invasive Surgery.
  • Insight (formerly TNTlog) is Tim Harper’s (CEO of Cientifica) blog features an international perspective (with a strong focus on the UK scene) on emerging technologies and the business of science. His writing style is quite lively (at times, trenchant) and it reflects his long experience with nanotechnology and other emerging technologies. I don’t know how he finds the time and here’s his latest, a Dec. 4, 2012 posting titled, Is Printable Graphene The Key To Widespread Applications?
  • 2020 Science is Dr. Andrew Maynard’s (director of University of Michigan’s Risk Science Center) more or less personal blog. An expert on nanotechnology (he was the Chief Science Adviser for the Project on Emerging Nanotechnologies, located in Washington, DC), Andrew writes extensively about risk, uncertainty, nanotechnology, and the joys of science. Over time his blog has evolved to include the occasional homemade but science-oriented video, courtesy of one of his children. I usually check Andrew’s blog when there’s a online nanotechnology kerfuffle as he usually has the inside scoop. His latest posting on Dec. 23, 2012 features this title, On the benefits of wearing a hat while dancing naked, and other insights into the science of risk.
  • Andrew also produces and manages the Mind the Science Gap blog, which is a project encouraging MA students in the University of Michigan’s Public Health Program to write. Andrew has posted a summary of the last semester’s triumphs titled, Looking back at another semester of Mind The Science Gap.
  • NanoWiki is, strictly speaking, not a blog but the authors provide the best compilation of stories on nanotechnology issues and controversies that I have found yet. Here’s how they describe their work, “NanoWiki tracks the evolution of paradigms and discoveries in nanoscience and nanotechnology field, annotates and disseminates them, giving an overall view and feeds the essential public debate on nanotechnology and its practical applications.” There are also Spanish, Catalan, and mobile versions of NanoWiki. Their latest posting, dated  Dec. 29, 2012, Nanotechnology shows we can innovate without economic growth, features some nanotechnology books.
  • In April 2012, I was contacted by Dorothée Browaeys about a French blog, Le Meilleur Des Nanomondes. Unfortunately, there doesn’t seem to have been much action there since Feb. 2010 but I’m delighted to hear from my European colleagues and hope to hear more from them.

Sadly, there was only one interview here this year but I think they call these things ‘a big get’ as the interview was with Vanessa Clive who manages the nanotechnology portfolio at Industry Canada. I did try to get an interview with Dr. Marie D’Iorio, the new Executive Director of Canada’s National Institute of Nanotechnology (NINT; BTW, the National Research Council has a brand new site consequently [since the NINT is a National Research Council agency, so does the NINT]), and experienced the same success I had with her predecessor, Dr. Nils Petersen.

I attended two conferences this year, S.NET (Society for the Study of Nanoscience and Emerging Technologies) 2012 meeting in Enschede, Holland where I presented on my work on memristors, artificial brains, and pop culture. The second conference I attended was in Calgary where I  moderated a panel I’d organized on the topic of Canada’s science culture and policy for the 2012 Canadian Science Policy Conference.

There are a few items of note which appeared on the Canadian science scene. ScienceOnlineVancouver emerged in April 2012. From the About page,

ScienceOnlineVancouver is a monthly discussion series exploring how online communication and social media impact current scientific research and how the general public learns about it. ScienceOnlineVancouver is an ongoing discussion about online science, including science communication and available research tools, not a lecture series where scientists talk about their work. Follow the conversation on Twitter at @ScioVan, hashtag is #SoVan.

The concept of these monthly meetings originated in New York with SoNYC @S_O_NYC, brought to life by Lou Woodley (@LouWoodley, Communities Specialist at Nature.com) and John Timmer (@j_timmer, Science Editor at Ars Technica). With the success of that discussion series, participation in Scio2012, and the 2012 annual meeting of the AAAS in Vancouver, Catherine Anderson, Sarah Chow, and Peter Newbury were inspired to bring it closer to home, leading to the beginning of ScienceOnlineVancouver.

ScienceOnlineVancouver is part of the ScienceOnlineNOW community that includes ScienceOnlineBayArea, @sciobayarea and ScienceOnlineSeattle, @scioSEA. Thanks to Brian Glanz of the Open Science Federation and SciFund Challenge and thanks to Science World for a great venue.

I have mentioned the arts/engineering festival coming up in Calgary, Beakerhead, a few times but haven’t had occasion to mention Science Rendezvous before. This festival started in Toronto in 2008 and became a national festival in 2012 (?). Their About page doesn’t describe the genesis of the ‘national’ aspect to this festival as clearly as I would like. They seem to be behind with their planning as there’s no mention of the 2013 festival,which should be coming up in May.

The twitter (@frogheart) feed continues to grow in both (followed and following) albeit slowly. I have to give special props to @carlacap, @cientifica, & @timharper for their mentions, retweets, and more.

As for 2013, there are likely to be some changes here; I haven’t yet decided what changes but I will keep you posted. Have a lovely new year and I wish you all the best in 2013.

Opening up Open Access: European Union, UK, Argentina, US, and Vancouver (Canada)

Monday, May 28th, 2012

There is a furor growing internationally and it’s all about open access. It ranges from a petition in the US to a comprehensive ‘open access’ project from the European Union to a decision in the Argentinian Legislature to a speech from David Willetts, UK Minister of State for Universities and Science to an upcoming meeting in June 2012 being held in Vancouver (Canada).

As this goes forward, I’ll try to be clear as to which kind of open access I’m discussing,  open access publication (access to published research papers), open access data (access to research data), and/or both.

The European Commission has adopted a comprehensive approach to giving easy, open access to research funded through the European Union under the auspices of the current 7th Framework Programme and the upcoming Horizon 2020 (or what would have been called the 8th Framework Pr0gramme under the old system), according to the May 9, 2012 news item on Nanowerk,

To make it easier for EU-funded projects to make their findings public and more readily accessible, the Commission is funding, through FP7, the project ‘Open access infrastructure for research in Europe’ ( OpenAIRE). This ambitious project will provide a single access point to all the open access publications produced by FP7 projects during the course of the Seventh Framework Programme.

OpenAIRE is a repository network and is based on a technology developed in an earlier project called Driver. The Driver engine trawled through existing open access repositories of universities, research institutions and a growing number of open access publishers. It would index all these publications and provide a single point of entry for individuals, businesses or other scientists to search a comprehensive collection of open access resources. Today Driver boasts an impressive catalogue of almost six million taken from 327 open access repositories from across Europe and beyond.

OpenAIRE uses the same underlying technology to index FP7 publications and results. FP7 project participants are encouraged to publish their papers, reports and conference presentations to their institutional open access repositories. The OpenAIRE engine constantly trawls these repositories to identify and index any publications related to FP7-funded projects. Working closely with the European Commission’s own databases, OpenAIRE matches publications to their respective FP7 grants and projects providing a seamless link between these previously separate data sets.

OpenAIRE is also linked to CERN’s open access repository for ‘orphan’ publications. Any FP7 participants that do not have access to an own institutional repository can still submit open access publications by placing them in the CERN repository.

Here’s why I described this project as comprehensive, from the May 9, 2012 news item,

‘OpenAIRE is not just about developing new technologies,’ notes Ms Manola [Natalia Manola, the project's manager], ‘because a significant part of the project focuses on promoting open access in the FP7 community. We are committed to promotional and policy-related activities, advocating open access publishing so projects can fully contribute to Europe’s knowledge infrastructure.’

The project is collecting usage statistics of the portal and the volume of open access publications. It will provide this information to the Commission and use this data to inform European policy in this domain.

OpenAIRE is working closely to integrate its information with the CORDA database, the master database of all EU-funded research projects. Soon it should be possible to click on a project in CORDIS (the EU’s portal for research funding), for example, and access all the open access papers published by that project. Project websites will also be able to provide links to the project’s peer reviewed publications and make dissemination of papers virtually effortless.

The project participants are also working with EU Members to develop a European-wide ‘open access helpdesk’ which will answer researchers’ questions about open access publishing and coordinate the open access initiatives currently taking place in different countries. The helpdesk will build up relationships and identify additional open access repositories to add to the OpenAIRE network.

Meanwhile, there’s been a discussion on the UK’s Guardian newspaper website about an ‘open access’ issue, money,  in a May 9, 2012 posting by John Bynner,

The present academic publishing system obstructs the free communication of research findings. By erecting paywalls, commercial publishers prevent scientists from downloading research papers unless they pay substantial fees. Libraries similarly pay huge amounts (up to £1m or more per annum) to give their readers access to online journals.

There is general agreement that free and open access to scientific knowledge is desirable. The way this might be achieved has come to the fore in recent debates about the future of scientific and scholarly journals.

Our concern lies with the major proposed alternative to the current system. Under this arrangement, authors are expected to pay when they submit papers for publication in online journals: the so called “article processing cost” (APC). The fee can amount to anything between £1,000 and £2,000 per article, depending on the reputation of the journal. Although the fees may sometimes be waived, eligibility for exemption is decided by the publisher and such concessions have no permanent status and can always be withdrawn or modified.

A major problem with the APC model is that it effectively shifts the costs of academic publishing from the reader to the author and therefore discriminates against those without access to the funds needed to meet these costs. [emphasis mine] Among those excluded are academics in, for example, the humanities and the social sciences whose research funding typically does not include publication charges, and independent researchers whose only means of paying the APC is from their own pockets. Academics in developing countries in particular face discrimination under APC because of their often very limited access to research funds.

There is another approach that could be implemented for a fraction of the cost of commercial publishers’ current journal subscriptions. “Access for all” (AFA) journals, which charge neither author nor reader, are committed to meeting publishing costs in other ways.

Bynner offers a practical solution, get the libraries to pay their subscription fees to an AFA journal, thereby funding ‘access for all’.

The open access discussion in the UK hasn’t stopped with a few posts in the Guardian, there’s also support from the government. David Willetts, in a May 2, 2012 speech to the UK Publishers Association Annual General Meeting had this to say, from the UK’s Dept. for Business Innovation and Skills website,

I realise this move to open access presents a challenge and opportunity for your industry, as you have historically received funding by charging for access to a publication. Nevertheless that funding model is surely going to have to change even beyond the positive transition to open access and hybrid journals that’s already underway. To try to preserve the old model is the wrong battle to fight. Look at how the music industry lost out by trying to criminalise a generation of young people for file sharing. [emphasis mine] It was companies outside the music business such as Spotify and Apple, with iTunes, that worked out a viable business model for access to music over the web. None of us want to see that fate overtake the publishing industry.

Wider access is the way forward. I understand the publishing industry is currently considering offering free public access to scholarly journals at all UK public libraries. This is a very useful way of extending access: it would be good for our libraries too, and I welcome it.

It would be deeply irresponsible to get rid of one business model and not put anything in its place. That is why I hosted a roundtable at BIS in March last year when all the key players discussed these issues. There was a genuine willingness to work together. As a result I commissioned Dame Janet Finch to chair an independent group of experts to investigate the issues and report back. We are grateful to the Publishers Association for playing a constructive role in her exercise, and we look forward to receiving her report in the next few weeks. No decisions will be taken until we have had the opportunity to consider it. But perhaps today I can share with you some provisional thoughts about where we are heading.

The crucial options are, as you know, called green and gold. Green means publishers are required to make research openly accessible within an agreed embargo period. This prompts a simple question: if an author’s manuscript is publicly available immediately, why should any library pay for a subscription to the version of record of any publisher’s journal? If you do not believe there is any added value in academic publishing you may view this with equanimity. But I believe that academic publishing does add value. So, in determining the embargo period, it’s necessary to strike a suitable balance between enabling revenue generation for publishers via subscriptions and providing public access to publicly funded information. In contrast, gold means that research funding includes the costs of immediate open publication, thereby allowing for full and immediate open access while still providing revenue to publishers.

In a May 22, 2012 posting at the Guardian website, Mike Taylor offers some astonishing figures (I had no idea academic publishing has been quite so lucrative) and notes that the funders have been a driving force in this ‘open access’ movement (Note: I have removed links from the excerpt),

The situation again, in short: governments and charities fund research; academics do the work, write and illustrate the papers, peer-review and edit each others’ manuscripts; then they sign copyright over to profiteering corporations who put it behind paywalls and sell research back to the public who funded it and the researchers who created it. In doing so, these corporations make grotesque profits of 32%-42% of revenue – far more than, say, Apple’s 24% or Penguin Books’ 10%. [emphasis mine]

… But what makes this story different from hundreds of other cases of commercial exploitation is that it seems to be headed for a happy ending. That’s taken some of us by surprise, because we thought the publishers held all the cards. Academics tend to be conservative, and often favour publishing their work in established paywalled journals rather than newer open access venues.

The missing factor in this equation is the funders. Governments and charitable trusts that pay academics to carry out research naturally want the results to have the greatest possible effect. That means publishing those results openly, free for anyone to use.

Taylor also goes on to mention the ongoing ‘open access’ petition in the US,

There is a feeling that the [US] administration fully understands the value of open access, and that a strong demonstration of public concern could be all it takes now to goad it into action before the November election. To that end a Whitehouse.gov petition has been set up urging Obama to “act now to implement open access policies for all federal agencies that fund scientific research”. Such policies would bring the US in line with the UK and Europe.

The people behind the US campaign have produced a video,

Anyone wondering about the reference to Elsevier may want to check out Thomas Lin’s Feb. 13, 2012 article for the New York Times,

More than 5,700 researchers have joined a boycott of Elsevier, a leading publisher of science journals, in a growing furor over open access to the fruits of scientific research.

You can find out more about the boycott and the White House petition at the Cost of Knowledge website.

Meanwhile, Canadians are being encouraged to sign the petition (by June 19, 2012), according to the folks over at ScienceOnline Vancouver in a description o f their June 12, 2012 event, Naked Science; Excuse: me your science is showing (a cheap, cheesy, and attention-getting  title—why didn’t I think of it first?),

Exposed. Transparent. Nude. All adjectives that should describe access to scientific journal articles, but currently, that’s not the case. The research paid by our Canadian taxpayer dollars is locked behind doors. The only way to access these articles is money, and lots of it!

Right now research articles costs more than a book! About $30. Only people with university affiliations have access and only journals their libraries subscribe to. Moms, dads, sisters, brothers, journalists, students, scientists, all pay for research, yet they can’t read the articles about their research without paying for it again. Now that doesn’t make sense.

….

There is also petition going around that states that research paid for by US taxpayer dollars should be available for free to US taxpayers (and others!) on the internet. Don’t worry if you are Canadian citizen, by signing this petition, Canadians would get access to the US research too and it would help convince the Canadian government to adopt similar rules. [emphasis mine]

Here’s where you can go to sign the petition. As for the notion that this will encourage the Canadian government to adopt an open access philosophy, I do not know. On the one hand, the government has opened up access to data, notably Statistics Canada data, mentioned by Frances Woolley in her March 22, 2012 posting about that and other open access data initiatives by the Canadian government on the Globe and Mail blog,

The federal government is taking steps to build the country’s data infrastructure. Last year saw the launch of the open data pilot project, data.gc.ca. Earlier this year the paywall in front of Statistics Canada’s enormous CANSIM database was taken down. The National Research Council, together with University of Guelph and Carleton University, has a new data registration service, DataCite, which allows Canadian researches to give their data permanent names in the form of digital object identifiers. In the long run, these projects should, as the press releases claim, “support innovation”, “add value-for-money for Canadians,” and promote “the reuse of existing data in commercial applications.”

That seems promising but there is a countervailing force. The Canadian government has also begun to charge subscription fees for journals that were formerly free. From the March 8, 2011 posting by Emily Chung on the CBC’s (Canadian Broadcasting Corporation) Quirks and Quarks blog,

The public has lost free online access to more than a dozen Canadian science journals as a result of the privatization of the National Research Council’s government-owned publishing arm.

Scientists, businesses, consultants, political aides and other people who want to read about new scientific discoveries in the 17 journals published by National Research Council Research Press now either have to pay $10 per article or get access through an institution that has an annual subscription.

It caused no great concern at the time,

Victoria Arbour, a University of Alberta graduate student, published her research in the Canadian Journal of Earth Sciences, one of the Canadian Science Publishing journals, both before and after it was privatized. She said it “definitely is too bad” that her new articles won’t be available to Canadians free online.

“It would have been really nice,” she said. But she said most journals aren’t open access, and the quality of the journal is a bigger concern than open access when choosing where to publish.

Then, there’s this from the new publisher, Canadian Science Publishing,

Cameron Macdonald, executive director of Canadian Science Publishing, said the impact of the change in access is “very little” on the average scientist across Canada because subscriptions have been purchased by many universities, federal science departments and scientific societies.

“I think the vast majority of researchers weren’t all that concerned,” he said. “So long as the journals continued with the same mission and mandate, they were fine with that.”

Macdonald said the journals were never strictly open access, as online access was free only inside Canadian borders and only since 2002.

So, journals that offered open access to research funded by Canadian taxpapers (to Canadians only) are now behind paywalls. Chung’s posting notes the problem already mentioned in the UK Guardian postings, money,

“It’s pretty prohibitively expensive to make things open access, I find,” she {Victoria Arbour] said.

Weir [Leslie Weir, chief librarian at the University of Ottawa] said more and more open-access journals need to impose author fees to stay afloat nowadays.

Meanwhile, the cost of electronic subscriptions to research journals has been ballooning as library budgets remain frozen, she said.

So far, no one has come up with a solution to the problem. [emphasis mine]

It seems they have designed a solution in the UK, as noted in John Bynner’s posting; perhaps we could try it out here.

Before I finish up, I should get to the situation in Argentina, from the May 27, 2012 posting on the Pasco Phronesis (David Bruggeman) blog (Note: I have removed a link in the following),

The lower house of the Argentinian legislature has approved a bill (en Español) that would require research results funded by the government be placed in institutional repositories once published.  There would be exceptions for studies involving confidential information and the law is not intended to undercut intellectual property or patent rights connected to research.  Additionally, primary research data must be published within 5 years of their collection.  This last point would, as far as I can tell, would be new ground for national open access policies, depending on how quickly the U.S. and U.K. may act on this issue.

Argentina steals a march on everyone by offering open access publication and open access data, within certain, reasonable constraints.

Getting back to David’s May 27, 2012 posting, he offers also some information on the European Union situation and some thoughts  on science policy in Egypt.

I have long been interested in open access publication as I feel it’s infuriating to be denied access to research that one has paid for in tax dollars. I have written on the topic before in my Beethoven inspires Open Research (Nov. 18, 2011 posting) and Princeton goes Open Access; arXiv is 10 years old (Sept. 30, 2011 posting) and elsewhere.

ETA May 28, 2012: I found this NRC Research Press website for the NRC journals and it states,

We are pleased to announce that Canadians can enjoy free access to over 100 000 back files of NRC Research Press journals, dating back to 1951. Access to material in these journals published after December 31, 2010, is available to Canadians through subscribing universities across Canada as well as the major federal science departments.

Concerned readers and authors whose institutes have not subscribed for the 2012 volume year can speak to their university librarians or can contact us to subscribe directly.

It’s good to see Canadians still have some access, although personally, I do prefer to read recent research.

ETA May 29, 2012: Yikes, I think this is one of the longest posts ever and I’m going to add this info. about libre redistribution and data mining as they relate to open access in this attempt to cover the topic as fully as possible in one posting.

First here’s an excerpt  from  Ross Mounce’s May 28, 2012 posting on the Palaeophylophenomics blog about ‘Libre redistribution’ (Note: I have removed a link),

I predict that the rights to electronically redistribute, and machine-read research will be vital for 21st century research – yet currently we academics often wittingly or otherwise relinquish these rights to publishers. This has got to stop. The world is networked, thus scholarly literature should move with the times and be openly networked too.

To better understand the notion of ‘libre redistribution’ you’ll want to read more of Mounce’s comments but you might also  want to check out Cameron Neylon’s comments in his March 6, 2012 posting on the Science in the Open blog,

Centralised control, failure to appreciate scale, and failure to understand the necessity of distribution and distributed systems. I have with me a device capable of holding the text of perhaps 100,000 papers It also has the processor power to mine that text. It is my phone. In 2-3 years our phones, hell our watches, will have the capacity to not only hold the world’s literature but also to mine it, in context for what I want right now. Is Bob Campbell ready for every researcher, indeed every interested person in the world, to come into his office and discuss an agreement for text mining? Because the mining I want to do and the mining that Peter Murray-Rust wants to do will be different, and what I will want to do tomorrow is different to what I want to do today. This kind of personalised mining is going to be the accepted norm of handling information online very soon and will be at the very centre of how we discover the information we need.

This moves the discussion past access (taxpayers not seeing the research they’ve funded, researchers who don’t have subscriptions, libraries not have subscriptions, etc.)  to what happens when you can get access freely. It opens up new ways of doing research by means of text mining and data mining redistribution of them both.

2011 Scientific integrity processes: the US and Canada

Friday, August 19th, 2011

Given recent scientific misconduct  (July is science scandal month [July 25 2011] post at The Prodigal Academic blog) and a very slow news month this August,  I thought I’d take a look at scientific integrity in the US and in Canada.

First, here’s a little history. March 9, 2009 US President Barack Obama issued a Presidential Memorandum on Scientific Integrity (excerpted),

Science and the scientific process must inform and guide decisions of my Administration on a wide range of issues, including improvement of public health, protection of the environment, increased efficiency in the use of energy and other resources, mitigation of the threat of climate change, and protection of national security.

The public must be able to trust the science and scientific process informing public policy decisions.  Political officials should not suppress or alter scientific or technological findings and conclusions.  If scientific and technological information is developed and used by the Federal Government, it should ordinarily be made available to the public.  To the extent permitted by law, there should be transparency in the preparation, identification, and use of scientific and technological information in policymaking.  The selection of scientists and technology professionals for positions in the executive branch should be based on their scientific and technological knowledge, credentials, experience, and integrity.

December 17, 2010 John P. Holdren, Assistant to the President for Science and Technology and Director of the Office of Science and Technology Policy,  issued his own memorandum requesting compliance with the President’s order (from the Dec. 17, 2010 posting on The White House blog),

Today, in response to the President’s request, I am issuing a Memorandum to the Heads of Departments and Agencies that provides further guidance to Executive Branch leaders as they implement Administration policies on scientific integrity. The new memorandum describes the minimum standards expected as departments and agencies craft scientific integrity rules appropriate for their particular missions and cultures, including a clear prohibition on political interference in scientific processes and expanded assurances of transparency. It requires that department and agency heads report to me on their progress toward completing those rules within 120 days.

Here’s my edited version (I removed fluff, i.e. material along these lines: scientific integrity is of utmost importance …) of the list Holdren provided,

Foundations

  1. Ensure a culture of scientific integrity.
  2. Strengthen the actual and perceived credibility of Government research. Of particular importance are (a) ensuring that selection of candidates for scientific positions in executive branch is based primarily on their scientific and technological knowledge, credentials, experience, and integrity, (b) ensuring that data and research used to support policy decisions undergo independent peer review by qualified experts where feasibly and appropriate, and consistent with law, (c) setting clear standards governing conflicts, and (d) adopting appropriate whistleblower protections.
  3. Facilitate the free flow of scientific and technological information, consistent with privacy and classification standards. … Consistent with the Administration’s Open Government Initiative, agencies should expand and promote access to scientific and technological information by making it available  online in open formats. Where appropriate, this should include data and models underlying regulatory proposals and policy decisions.
  4. Establish principles for conveying scientific and technological information to the public. … Agencies should communicate scientific and technological findings by including a clear explication of underlying assumptions; accurate contextualization of uncertainties; and a description of the probabilities associated with optimistic and pessimistic projections, including best-case and worst-case scenarios where appropriate.

Public communication

  1. In response to media interview requests about the scientific and technological dimensions of their work, agencies will offer articulate and knowledgeable spokespersons who can, in an objective and nonpartisan fashion, describe and explain these dimension to the media and the American people.
  2. Federal scientists may speak to the media and the public about scientific and technological matters based on their official work, with appropriate coordination with their immediate supervisor and their public affairs office. In no circumstance may public affairs officers ask or direct Federal scientists to alter scientific findings.
  3. Mechanisms are in place to resolve disputes that arise from decisions to proceed or not to proceed  with proposed interviews or other public information-related activities. …

(The sections on Federal Advisory Committees and professional development were less relevant to this posting, so I haven’t included them here.)

It seems to have taken the agencies a little longer than the 120 day deadline that John Holdren gave them but all (or many of the agencies) have complied according to an August 15, 2011 posting by David J. Hanson on the Chemical & Engineering News (C&EN) website,

OSTP director John P. Holdren issued the call for the policies on May 5 in response to a 2009 Presidential memorandum (C&EN, Jan. 10, page 28). [emphasis mine] The memorandum was a response to concerns about politicization of science during the George W. Bush Administration.

The submitted integrity plans include 14 draft policies and five final policies. The final policies are from the National Aeronautics & Space Administration, the Director of National Intelligences for the intelligence agencies, and the Departments of Commerce, Justice, and Interior.

Draft integrity policies are in hand from the Departments of Agriculture, Defense, Education, Energy, Homeland Security, Health & Human Services, Labor, and Transportation and from the National Oceanic & Atmospheric Administration, National Science Foundation, Environmental Protection Agency, Social Security Administrations, OSTP, and Veterans Administration.

The drafts still under review are from the Department of State, the Agency for International Development, and the National Institute of Standards & Technology.

The dates in this posting don’t match up with what I’ve found but it’s possible that the original deadline was moved to better accommodate the various reporting agencies. In any event, David Bruggeman at his Pasco Phronesis blog has commented on this initiative in a number of posts including this August 10, 2011 posting,

… I’m happy to see something out there at all, given the paltry public response from most of the government.  Comments are open until September 6.Regrettably, the EPA [Environmental Protection Agency] policy falls into a trap that is all too common.  The support of scientific integrity is all too often narrowly assumed to simply mean that agency (or agency-funded) scientists need to behave, and there will be consequences for demonstrated bad behavior.

But there is a serious problem of interference from non-scientific agency staff that would go beyond reasonable needs for crafting the public message.

David goes on to discuss a lack of clarity in this policy and in the Dept. of the Interior’s policy.

His August 11, 2011 posting notes the OSTP claims that 19 departments/agencies have submitted draft or final policies,

… Not only does the OSTP blog post not include draft or finalized policies submitted to their office, it fails to mention any timeframe for making them publicly available.  Even more concerning, there is no mention of those policies that have been publicly released.  That is, regrettably, consistent with past practice. While the progress report notes that OSTP will create a policy for its own activities, and that OSTP is working with the Office of Management and Budget on a policy for all of the Executive Office of the President, there’s no discussion of a government-wide policy.

In the last one of his recent series, the August 12, 2011 posting focuses on a Dept. of Commerce memo (Note: The US Dept. of Commerce includes the National Oceanic and Atmospheric Administration and the National Institute of Standards and Technology),

“This memorandum confirms that DAO 219-1 [a Commerce Department order concerning scientific communications] allows scientists to engage in oral fundamental research communications (based on their official work) with the media and the public without notification or prior approval to their supervisor or to the Office of Public Affairs. [emphasis David Bruggeman] Electronic communications with the media related to fundamental research that are the equivalent of a dialogue are considered to be oral communications; thus, prior approval is not required for  scientist to engage in online discussions or email with the media about fundamental research, subject to restrictions on protected nonpublic information as set forth in 219-1.”

I find the exercise rather interesting especially in light of Margaret Munro’s July 27, 2011 article, Feds silence scientist over salmon study, for Postmedia,

Top bureaucrats in Ottawa have muzzled a leading fisheries scientist whose discovery could help explain why salmon stocks have been crashing off Canada’s West Coast, according to documents obtained by Postmedia News.

The documents show the Privy Council Office, which supports the Prime Minister’s Office, stopped Kristi Miller from talking about one of the most significant discoveries to come out of a federal fisheries lab in years.

Science, one of the world’s top research journals, published Miller’s findings in January. The journal considered the work so significant it notified “over 7,400″ journalists worldwide about Miller’s “Suffering Salmon” study.

The documents show major media outlets were soon lining up to speak with Miller, but the Privy Council Office said no to the interviews.

In a Twitter conversation with me, David Bruggeman did note that the Science paywall also acts as a kind of muzzle.

I was originally going to end the posting with that last paragraph but I made a discovery, quite by accident. Canada’s Tri-Agency Funding Councils opened a consultation with stakeholders on Ethics and Integrity for Institutions, Applicants, and Award Holders on August 15, 2011 which will run until September 30, 2011. (This differs somewhat from the US exercise which is solely focussed on science as practiced in various government agencies.  The equivalent in Canada would be if Stephen Harper requested scientific integrity guidelines from the Ministries of Environment, Natural Resources, Health, Industry, etc.) From the NSERC Ethics and Integrity Guidelines page,

Upcoming Consultation on the Draft Tri-Agency Framework: Responsible Conduct of Research

The Canadian Institutes of Health Research (CIHR), the Social Sciences and Humanities Research Council of Canada (SSHRC), and NSERC (the tri-agencies) continue to work on improving their policy framework for research and scholarly integrity, and financial accountability. From August 15 to September 30, 2011, the three agencies are consulting with a wide range of stakeholders in the research community on the draft consultation document, Tri-Agency Framework: Responsible Conduct of Research.

I found the answers to these two questions in the FAQs particularly interesting,

  • What are some of the new elements in this draft Framework?

The draft Framework introduces new elements, including the following:

A strengthened Tri-Agency Research Integrity Policy
The draft Framework includes a strengthened Tri-Agency Research Integrity Policy that clarifies the responsibilities of the researcher.

‘Umbrella’ approach to RCR
The draft Framework provides an overview of all applicable research policies, including those related to the ethical conduct of research involving humans and financial management, as well as research integrity. It also clarifies the roles and responsibilities of researchers, institutions and Agencies in responding to all types of alleged breaches of Agency policies, for example, misuse of funds, unethical conduct of research involving human participants or plagiarism.

A definition of a policy breach
The draft Framework clarifies what constitutes a breach of an Agency policy.

Disclosure
The draft Framework requires researchers to disclose, at the time of application, whether they have ever been found to have breached any Canadian or other research policies, regardless of the source of funds that supported the research and whether or not the findings originated in Canada or abroad.

The Agencies are currently seeking advice from privacy experts on the scope of the information to be requested.

Institutional Investigations
The Agencies currently specify that institutional investigation committee membership must exclude those in conflict of interest. The draft Framework stipulates also that an investigation committee must include at least one member external to the Institution, and that an Agency may conduct its own review or compliance audit, or require the Institution to conduct an independent review/audit.

Timeliness of investigation
Currently, it is up to institutions to set timelines for investigations. The draft Framework states that inquiry and investigation reports are to be submitted to the relevant Agency within two and seven months, respectively, following receipt of the allegation by the institution.

  • Who is being consulted?

The Agencies have targeted their consultation to individual researchers, post-secondary institutions and other eligible organizations that apply for and receive Agency funding.

As far as I can tell, there is no mention of ethical issues where the government has interfered in the dissemination of scientific information; it seems there is an assumption that almost all ethical misbehaviour is on that part of the individual researcher or a problem with an institution following policy. There is one section devoted breaches by institutions (all two paragraphs of it),

5 Breaches of Agency Policies by Institutions

In accordance with the MOU signed by the Agencies and each Institution, the Agencies require that each Institution complies with Agency policies as a condition of eligibility to apply for and administer Agency funds.

The process followed by the Agencies to address an allegation of a breach of an Agency policy by an Institution, and the recourse that the Agencies may exercise, commensurate with the severity of a confirmed breach, are outlined in the MOU.

My criticism of this is similar to the one that David Bruggeman made of the US policies in that the focus is primarily on the individual.

Geek rap, Björk, and science communication

Monday, July 4th, 2011

I came across a June 29, 2011 article in Physics Today [online] by Steve Corneliussen about ‘geek’ rap. From the Corneliussen article,

Science rap is no flash in the pan according to Dennis Overbye, the high-visibility New York Times science writer. This week he proclaimed that “‘geek rap’ … is becoming one of the most popular and vital forms of science communication.” Immediately he added: “Few exegeses of the Large Hadron Collider match Alpinekat’s ‘Large Hadron Rap’ for punch and rhythm, and Stephen Hawking’s robot voice and puckish wit have spawned a host of imitators, like M C Hawking, rapping about black holes and entropy.”

Poetry and/or music, in combination with science is not new. Take a few more recent examples, James Clerk Maxwell, in addition to his scientific accomplishments in the 19th century, was also a poet and Tom Lehrer (pianist and mathematician) set the Periodic Table of Chemical Elements to music (The Elements) in the 1950s.

One can stretch back further to De rerum natura, an epic poem about physics and Epicurean philosophy written by Lucretius in the first century BCE (before the common era). From the Wikipedia essay on De rerum natura,

The poem, written in dactylic hexameter, is divided into six books, and explores Epicurean physics through richly poetic language and metaphors. Lucretius presents the principles of atomism; the nature of the mind and soul; explanations of sensation and thought; the development of the world and its phenomena; and explains a variety of celestial and terrestrial phenomena. The universe described in the poem operates according to these physical principles, guided by fortuna, “chance,” and not the divine intervention of the traditional Roman deities.

It’s good to see that rappers are keeping the traditions alive and reinterpreting them for modern audiences. Dennis Overbye, the New York Times science writer mentioned in the Corneliussen article, recently highlighted Baba Brinkman, a Vancouver-based rapper, (mentioned here a few times a list of those posts follows), who’s currently  performing his Rap Guide to Evolution at an off Broadway theatre. From Overbye’s June 27, 2011 article of Brinkman’s show,

Don’t sleep with mean people.

That’s a lesson some of us learn painfully, if at all, in regard to our personal happiness. That there could be a cosmic evolutionary angle to this thought had never occurred to me until I heard Baba Brinkman, a rap artist and Chaucer scholar, say it the other night. Think of it as the ultimate example of thinking globally and acting very, very locally. We are all in the process of recreating our species in our most intimate acts:

Don’t sleep with mean people, that’s the anthem

Please! Think about your granddaughters and grandsons

Don’t sleep with mean people, pretty or handsome

Mean people hold the gene pool for ransom.

Writing on NYTimes.com last year, Olivia Judson, the biologist and author, called the evolution rap show “one of the most astonishing, and brilliant, lectures on evolution I’ve ever seen.” On a humid night last week the crowd spilled out of the playhouse and down the streets of SoHo after the show, chatting about the technical and social aspects of natural selection.

Björk has taken her own approach to science, music, and, in her case, song with her new show Biophilia. From the July 1, 2011 article by David Robson for The New Scientist’s Culture Lab blog,

As the lights dimmed and we waited for Björk to mount the stage of the Victorian market hall, the last thing I expected to hear was a recording of the dulcet tones of David Attenborough, waxing lyrical about nature, music and technology.

Perhaps I shouldn’t have been surprised, though. The show does, after all, take its name, Biophilia, from Edward O. Wilson’s theory about the instinctive bond between humankind and nature, which he claims is a necessary consequence of our evolutionary origins. And the Icelandic singer has made it clear that she is a life-long fan of the British naturalist. “When I was a kid, my rock star was David Attenborough,” she recently told Rolling Stone. “I’ve always been interested in science.”

And boy, did she manage to pack a dizzying amount of it into the show. There were songs about plate tectonics, galaxy formation, crystallisation, DNA and heredity, equilibrium, gravity and dark matter. Then there were the novel instruments, including four harps driven by 10-foot pendulums and a gigantic Tesla coil that sparked in time to the music. We’re told that the structures of her compositions, too, were inspired by scientific ideas – the beats to some of the songs were based on prime number sequences, for example.

While Baba’s rap is peer-reviewed, Björk’s work is aimed a little differently. As David Bruggeman (Pasco Phronesis) explains in his July 3, 2011 posting,

They [reviews of Biophilia] suggest that Björk is not even thinking of encroaching on Baba Brinkman or They Might Be Giants science music turf anytime soon.  While she shares their enthusiasm for science, expressing that enthusiasm, rather than explaining the concepts underneath it, seems to be the main science emphasis of the work.

Here’s a demonstration of the Tesla coil synth prior to a Biophilia performance in Campfield (ETA July 5, 2011: This is where Bjork premiered Biophilia June 27, 2011 at the Manchester International Festival, more details in July 5, 2011 note added after this  post),

There are more Biophilia-related video clips but this was one of the shorter ones.

As for the Baba Brinkman posts I mentioned earlier, here are the most relevant ones from the earliest to the latest,

Darwin theme: Rap about Darwin & evolutionary biology and Darwinism in quantum dots

Rapping science

Interview with Baba Brinkman who performs his Rap Guide to Evolution in Vancouver on Feb. 20, 2011

Performance, feedback, revision: Baba Brinkman’s Feb.20.11 performance

Baba Brinkman launches his new Lit Fuse record label website and a Vancouver debut performance of his Chaucer/Gilgamesh/Beowulf adaptation

2011 World Science Festival and a couple of Canucks

Prince Charles, evolution and Baba Brinkman

Here’s very recent news (from a July 4, 2011 email) about Baba’s CD,

First thing’s [sic] first, I have a new CD out! The Rap Guide to Evolution: Revised is a brand new 14-track album produced by Mr. Simmonds. It started out as a “remix” of the original RGE CD from a few years ago but soon took on a life of its own with all new music, new collaborations, and most of the lyrics re-written (performance, feedback, revision), plus three completely new tracks. We’ve been working on this album all year long and finally finished it last week. Click here to listen to the evolution of the rap guide, and download it Radiohead-style (pay what you like).

I like the fact that there’s a range of approaches to science communication, poetry, and music. I think there’s room for everybody.

ETA July 5, 2011: There’s a July 4, 2011 article by Simon Reynolds of The Guardian that offers a little more information about Biophilia and Björk (from the article),

Originally formulated by scientist Edward O Wilson, the biophilia hypothesis suggests that human beings have an innate affinity with the natural world – plants, animals or even the weather. Yet it’s not biophilia but good old-fashioned fandom that has drawn a small band of Björk obsessives to queue outside Manchester’s Campfield Market Hall since 10am this morning. Not that there’s anything old-fashioned about the woman they are here to see. Biophilia is the Icelandic singer’s new project – the word means “love of living things” – and promises to push the envelope so far you’ll need the Hubble telescope to see it.

A collection of journalists have already had a preview at a press conference in the Museum of Science and Industry over the road. Björk is absent, preparing for tonight’s live show, her first in the UK for over three years, which will open the Manchester international festival. Instead, artist and app developer Scott Snibbe, musicologist Nikki Dibben and project co-ordinator James Merry talk through Biophilia’s many layers. There will be an album in September, with an app to go with each of the 10 songs. There will be an education project, designed to teach children about nature, music and technology – some local kids will embark on it next week. There will be a documentary. And then there will be tonight’s show, performed in the round to a 2,000-strong crowd including journalists representing publications from New Scientist to the New York Times, as well as the diehard fans waiting outside.

There you have it.

Prince Charles, evolution, and Baba Brinkman

Tuesday, May 24th, 2011

It’s the Prince Charles Cinema in London’s Leicester Square not the prince himself that I’m talking about. Baba Brinkman, the Vancouver-based rapper whose Rap Guide to Evolution performance is about to be launched in a June off-Broadway show in New York, is launching yet something else tomorrow, May 25, 2011. From Baba Brinkman’s May 23, 2011 newsletter,

On Wednesday May 25 at the Prince Charles Cinema in Leicester Square, London, we will be premiering the Rap Guide to Evolution Music Videos [emphasis mine], sponsored by the Wellcome Trust. The new website, www.rapguidetoevolution.co.uk, is now live, please take a moment to check it out! Over the next few months the site will be populated with a whole series of new music videos, links to evolution news and information, resources and discussion, all in aid of teaching evolutionary science through rap.

Here’s a preview of one of the new videos which will be premiered tomorrow night,

Here’s one more tidbit from Baba’s newsletter,

I’ve also just had word that Charles Darwin’s great-great-grandson, Randal Keynes, who has written a biography of Darwin and whom I had the pleasure of meeting two years ago in Cambridge, will be the opening speaker at the event. I just spoke to Randal half an hour ago and he said he’s really looking forward to the launch as well.

David Bruggeman at the Pasco Phronesis blog has more details about this launch in the UK (excerpted from his May 16, 2011 posting),

The new phase of the project is visual, with a grant from the Wellcome Trust and over 12,000 additional pounds (raised from volunteers) used to shoot and produce videos for each of the tunes. It was prompted by requests from teachers for a DVD edition of the Rap Guide. There is also a new track out, which Brinkman says is the first track from a forthcoming remix album. The project gets a proper U.K. rollout (the home of the Wellcome Trust) in London on May 25th.

Good luck to Baba Brinkman and the various teams working with him to produce these videos and shows.

Scientific collaboration: a royal society report

Tuesday, March 29th, 2011

The UK’s Royal Society has released a science policy report titled, Knowledge, Networks and Nations; Global scientific collaboration in the 21st century. I have taken a brief glance at this 114 page report and am impressed with the analysis and the thoughtfulness and range of the discussion about the ‘global scientific landscape’. The authors claim this landscape is becoming largely collaborative while the research enterprise becomes multipolar, i. e., less dominated by a few countries (US, UK, Germany, Japan, etc.) as China, Turkey, India, Brazil and many others increase their scientific output. From the Royal Society’s webpage (http://royalsociety.org/policy/reports/knowledge-networks-nations/?utm_source=social_media&utm_medium=hootsuite&utm_campaign=standard),

Knowledge, Networks and Nations surveys the global scientific landscape in 2011, noting the shift to an increasingly multipolar world underpinned by the rise of new scientific powers such as China, India and Brazil; as well as the emergence of scientific nations in the Middle East, South-East Asia and North Africa. The scientific world is also becoming more interconnected, with international collaboration on the rise. Over a third of all articles published in international journals are internationally collaborative, up from a quarter 15 years ago.

If you’re interested in reviewing the report you can go here (http://royalsociety.org/uploadedFiles/Royal_Society_Content/Influencing_Policy/Reports/2011-03-28-Knowledge-networks-nations.pdf) to access the PDF directly. I particularly noticed this bit in the executive summary,

Science is essential for addressing global challenges, but it cannot do so in isolation. A wide range of approaches will be required, including the appropriate use of financial incentives, incorporating non-traditional forms of knowledge, and working with the social sciences and wider disciplines. Science is crucial but it is unlikely to produce all the answers by itself: the science infrastructure works best when it is supported by, and enables, other systems. [emphases mine] (p. 7)

It’s good to see this notion that ‘science alone is not the answer’ stated elsewhere and it’s particularly good to see that it was stated by scientists themselves. (This is the point I was trying to make to the expert panel for the recent Canadian public consultation on innovation (aka Review of Federal Support to Research and Development)  in my Feb. 18, 2011 posting [http://www.frogheart.ca/?p=2836], in my March 15, 2011 posting [http://www.frogheart.ca/?p=3118], and in my submission.)

The recommendations in the Royal Society report include these (from the Royal Society wepage),

It makes 5 major recommendations:

1. Support for international science should be maintained and strengthened
2. Internationally collaborative science should be encouraged, supported and facilitated
3. National and international strategies for science are required to address global challenges
4. International capacity building is crucial to ensure that the impacts of scientific research are shared globally
5. Better indicators are required in order to properly evaluate global science

I don’t have anything to say about the recommendations other than they seem sensible. One final note, the visualization of the data is quite interesting and worth a look. I’d love to have made a copy and embedded one of their visualizations here but I guess they’re not quite as collaboratively-minded as they like to think of themselves because it’s not possible. (I always think that collaboration includes giving some of your material to another party.) I do urge you to visit here (http://royalsociety.org/knowledge-networks-nations-graph/) to see a figure representing the number of collaborative papers as a proportion of national output. Not your standard bar chart. If you glance through the report, you’ll see different types of these visualizations, some of which I understand better than others.

ETA April 12, 2011: David Bruggeman at his Pasco Phronesis made an insightful observation about Iran and the discussion that the Royal Society’s report has generated (from his April 7, 2011 posting, Meet the New Science Superpower…Iran),

Yeah, you read that right. New Scientist noted that in the Royal Society’s recently released report Knowledge, Networks and Nations that Iran has the fastest rate of growth in scientific publication in the world. I find that an interesting variation in the press coverage of the report, which is almost exclusively about how China is, once again, playing catch-up to the U.S. in scientific publishing.

Do take a look at the comments in full. There are more tidbits.

Baba Brinkman crowdsourcing his DVD–an appeal from the heart

Monday, January 10th, 2011

The Vancouver-based rapper, Baba Brinkman, who sometimes raps about science is currently trying to crowdsource funding for an enhanced DVD of his Rap Guide to Evolution. Here’s a rough video of the rap from Brinkman’s visit to the Centre for Systems Biology, University of Birmingham, England,

I have a much posher video version of one of Brinkman’s evolution raps in my Aug. 4,2010 posting about him.

Pasco Phronesis (David Bruggeman) has been campaigning for Brinkman’s project (from his Jan. 7, 2011 posting),

The DVD is being produced, and the videos for the songs (which you can hear online for free, and download for naming your price) have been filmed. The Crowdfunder drive is to get 10,000 pounds to make the DVD better. As Baba describes it:

“The additional funding from Crowdfunder will allow us to produce original animation and digital effects and license high-quality nature footage from the BBC, to make the vision of each video really come to life.

If you donate 10 pounds (roughly $15.55 with today’s conversion in USD), you get a digital download of the DVD.

If you want a physical copy, that’s 20 pounds.

If you want your face in the DVD (as part of the digital animation the crowd money will cover), that’s 30 pounds.

If you’ve got a thousand pounds and enough to cover Brinkman’s travel, he’ll come perform for you sometime this year, depending on his schedule. Those of us without deep pockets will have to wait and see if his off-Broadway production of Rap Guide to Evolution takes flight.

The songs are peer reviewed, and with no slight to most of the science music I’ve promoted here, it’s Brinkman, They Might Be Giants, and the stuff Tom McFadden from Stanford has been involved with. Everyone else is too far back to eat their dust. (Bill Nye, of course, is in the hall of fame and not currently active)

The music is good, Brinkman is a compelling performer, and the science is sound. If you’re still stuck on a thirty pound donation, think about it as getting a high-quality DVD and donating to help science education. Because that’s what you’ll be doing. And if you’re looking for a little red meat in all of this, Brinkman has it for you (posted December 13):

“On Friday we filmed an epic breakdance battle with Darwin facing down his intellectual rivals, Michel Foucault (representing social constructivism), Sarah Palin (representing the christian right), and God (representing Himself, of course). It was a satirical reconstruction of the evolutionary culture wars on the dancefloor and Darwin reigned supreme!”

If you are so moved, you can go here to help fund the project.

Crowdsourcing science funding cuts in the US

Tuesday, December 7th, 2010

There’s a variation of an old political game being played out in the US these days. I can’t remember exactly the last time Canadians played it but here’s the setup, a politician looks up the grant information for a funding organization such as the Social Sciences and Humanities Research Council in Canada, scans the titles for the research papers, picks out a few at random, holds them up for ridicule and as an example of poor government investment, then asks the public to speak out or protest this waste of money.

Recently in the US, the Republican party decided to create a website titled, YouCut (I appreciate the word play on the YouTube brand), featuring a video of a very personable politician holding up a few recent research grants from the National Science Foundation (NSF) as examples of ridiculous research and a waste of money. The site also features instructions for how citizens can look up NSF research grants for themselves and nominate their choices to be included in a YouCut report.

Pasco Phronesis (David Bruggeman) outlined concerns about the program’s execution (he notes that the US politician spearheading is looking at a wide range of government programmes, not just NSF funding)  in a Dec. 3, 2010 posting,

The execution of this project is pretty lousy, targeted at political outcomes much, much more than making meaningful policy changes. Looking at the targeted programs in the YouCut program, most of them are relatively small in terms of funding (this week’s candidates are all under $50 million – a tiny fraction of a percentage point of the federal budget), and many seem to be targets more for political purposes than actual fraud, waste, unnecessary duplication or abuse. The reporting mechanism is particularly lousy as it won’t be able to collect any meaningful data about grants or programs. It’s more about what people don’t like, without room for any explanation. Finally, a program like this, placed on the website of a political operation, makes it really easy to politicize the whole thing, and roll it into some pale imitation of Senator William Proxmire’s grandstanding back in the 1980s. ‘Great soundbites’ lousy policies.

Pasco Phronesis goes on to support the principle of asking for feedback,

That said, I see no reason why the public shouldn’t provide feedback to the National Science Foundation (NSF) and its grantees about grant proposals that they think are duplicative or wasteful. It is public money being spent, and if grantees can’t explain their work to the public, I don’t think they’ve earned the right to it. There is the matter of how such feedback is conducted.

Dan Vergano in his USA Today article about politicians and science funding, How some politicians stumble on science, gives a little more detail about the ‘ridiculous’ research cited in the YouCut video,

So, as you might expect, when we asked the National Science Foundation about the two grants that Smith [Republican politician] mentioned, we learned a little more about them.

For example, the soccer study turns out to be computer scientists studying how remotely connected teams form to conduct “nanoscience, environmental engineering, earthquake engineering, chemical sciences, media research and tobacco research.”

And the “breaking things” study turns out to be acoustics experts ” pursuing fundamental advances in computational methods while solving several particularly challenging sound rendering problems,” so that the U.S. military, among others, can create more realistic combat simulators for troops.

“These aren’t about soccer research,” says the NSF’s Maria Zacharias. “All of these projects go through our very rigorous peer-review process,” she adds, part of what made the NSF the only one of 26 federal agencies to receive a “green” rating from the Bush administration in its initial rating of government management practices.

Vergano concludes his article by noting that history behind some of these tensions in the US,

Since 1950, when NSF was founded, a tension has existed between the decision made then that peer review — scientists scoring each other’s work to fund the most worthy efforts — would be the way to fund research, rather than doling it out as earmarks from politicians, which was the other big idea favored by some then. “Experts are in a better position to know what’s worth the money and what isn’t,” Teich [Al Teich, science budget expert for the American Association for the Advancement of Science] says.

Zacharias suggests that researchers need to work harder to let the public know “lab mice, soccer players, other critters” are just tools for scientists trying to answer complex questions, not an end in themselves.

“In the laboratory there are no fustian ranks, no brummagem aristocracies,” wrote Twain, putting it a bit more elegantly. “The domain of Science is a republic, and all its citizens are brothers and equals.”

From a science communication perspective, the YouCut website/video, the discussion on the Pasco Phronesis blog, and the article by Dan Vergano provide some useful insight.

Henry Petroski, The Essential Engineer explaining why scientists need engineers to solve the world’s problems

Wednesday, November 3rd, 2010

The Pasco Phronesis blog (David Bruggeman) featured, in his Oct. 6, 2010 posting, some author videos from the 2010 US National Book Festival. From Pasco Phronesis,

Since there’s several hundred videos to wade through, here are the links to the four authors I saw on September 25. I strongly recommend you watch the Petroski video, though anyone familiar with the work of the other authors should enjoy listening to them. You’ll need RealPlayer to view.

* Edward O. Wilson

* Henry Petroski

* Richard Rhodes

* Harold Varmus

Since David strongly recommended the Petroski video, I searched for and found it on Youtube (didn’t want to bother with the RealPlayer plugin),

Petroski is an engineer who’s specialty is failure and he’s talking about his latest book, The Essential Engineer: Why Science Alone Will Not Solve Our Global Problems (2010).