Tag Archives: Russian Academy of Sciences

Scientometrics and science typologies

Caption: As of 2013, there were 7.8 million researchers globally, according to UNESCO. This means that 0.1 percent of the people in the world professionally do science. Their work is largely financed by governments, yet public officials are not themselves researchers. To help governments make sense of the scientific community, Russian mathematicians have devised a researcher typology. The authors initially identified three clusters, which they tentatively labeled as “leaders,” “successors,” and “toilers.” Credit: Lion_on_helium/MIPT Press Office

A June 28, 2018 Moscow Institute of Physics and Technology (MIPT; Russia) press release (also on EurekAlert) announces some intriguing research,

Researchers in various fields, from psychology to economics, build models of human behavior and reasoning to categorize people. But it does not happen as often that scientists undertake an analysis to classify their own kind.

However, research evaluation, and therefore scientist stratification as well, remain highly relevant. Six years ago, the government outlined the objective that Russian scientists should have 50 percent more publications in Web of Science- and Scopus-indexed journals. As of 2011, papers by researchers from Russia accounted for 1.66 percent of publications globally. By 2015, this number was supposed to reach 2.44%. It did grow but this has also sparked a discussion in the scientific community about the criteria used for evaluating research work.

The most common way of gauging the impact of a researcher is in terms of his or her publications. Namely, whether they are in a prestigious journal and how many times they have been cited. As with any good idea, however, one runs the risk of overdoing it. In 2005, U.S. physicist Jorge Hirsch proposed his h-index, which takes into account the number of publications by a given researcher and the number of times they have been cited. Now, scientists are increasingly doubting the adequacy of using bibliometric data as the sole independent criterion for evaluating research work. One obvious example of a flaw of this metric is that a paper can be frequently cited to point out a mistake in it.

Scientists are increasingly under pressure to publish more often. Research that might have reasonably been published in one paper is being split up into stages for separate publication. This calls for new approaches to the evaluation of work done by research groups and individual authors. Similarly, attempts to systematize the existing methods in scientometrics and stratify scientists are becoming more relevant, too. This is arguably even more important for Russia, where the research reform has been stretching for years.

One of the challenges in scientometrics is identifying the prominent types of researchers in different fields. A typology of scientists has been proposed by Moscow Institute of Physics and Technology Professor Pavel Chebotarev, who also heads the Laboratory of Mathematical Methods for Multiagent Systems Analysis at the Institute of Control Sciences of the Russian Academy of Sciences, and Ilya Vasilyev, a master’s student at MIPT.

In their paper, the two authors determined distinct types of scientists based on an indirect analysis of the style of research work, how papers are received by colleagues, and what impact they make. A further question addressed by the authors is to what degree researcher typology is affected by the scientific discipline.

“Each science has its own style of work. Publication strategies and citation practices vary, and leaders are distinguished in different ways,” says Chebotarev. “Even within a given discipline, things may be very different. This means that it is, unfortunately, not possible to have a universal system that would apply to anyone from a biologist to a philologist.”

“All of the reasonable systems that already exist are adjusted to particular disciplines,” he goes on. “They take into account the criteria used by the researchers themselves to judge who is who in their field. For example, scientists at the Institute for Nuclear Research of the Russian Academy of Sciences are divided into five groups based on what research they do, and they see a direct comparison of members of different groups as inadequate.”

The study was based on the citation data from the Google Scholar bibliographic database. To identify researcher types, the authors analyzed citation statistics for a large number of scientists, isolating and interpreting clusters of similar researchers.

Chebotarev and Vasilyev looked at the citation statistics for four groups of researchers returned by a Google Scholar search using the tags “Mathematics,” “Physics,” and “Psychology.” The first 515 and 556 search hits were considered in the case of physicists and psychologists, respectively. The authors studied two sets of mathematicians: the top 500 hits and hit Nos. 199-742. The four sets thus included frequently cited scientists from three disciplines indicating their general field of research in their profiles. Citation dynamics over each scientist’s career were examined using a range of indexes.

The authors initially identified three clusters, which they tentatively labeled as “leaders,” “successors,” and “toilers.” The leaders are experienced scientists widely recognized in their fields for research that has secured an annual citation count increase for them. The successors are young scientists who have more citations than toilers. The latter earn their high citation metrics owing to yearslong work, but they lack the illustrious scientific achievements.

Among the top 500 researchers indicating mathematics as their field of interest, 52 percent accounted for toilers, with successors and leaders making up 25.8 and 22.2 percent, respectively.

For physicists, the distribution was slightly different, with 48.5 percent of the set classified as toilers, 31.7 percent as successors, and 19.8 percent as leaders. That is, there were more successful young scientists, at the expense of leaders and toilers. This may be seen as a confirmation of the solitary nature of mathematical research, as compared with physics.

Finally, in the case of psychologists, toilers made up 47.7 percent of the set, with successors and leaders accounting for 18.3 and 34 percent. Comparing the distributions for the three disciplines investigated in the study, the authors conclude that there are more young achievers among those doing mathematical research.

A closer look enabled the authors to determine a more fine-grained cluster structure, which turned out to be remarkably similar for mathematicians and physicists. In particular, they identified a cluster of the youngest and most successful researchers, dubbed “precocious,” making up 4 percent of the mathematicians and 4.3 percent of the physicists in the set, along with the “youth” — successful researchers whose debuts were somewhat less dramatic: 29 and 31.7 percent of scientists doing math and physics research, respectively. Two further clusters were interpreted as recognized scientific authorities, or “luminaries,” and experienced researchers who have not seen an appreciable growth in the number of citations recently. Luminaries and the so-called inertia accounted for 52 and 15 percent of mathematicians and 50 and 14 percent of physicists, respectively.

There is an alternative way of clustering physicists, which recognizes a segment of researchers, who “caught the wave.” The authors suggest this might happen after joining major international research groups.

Among psychologists, 18.3 percent have been classified as precocious, though not as young as the physicists and mathematicians in the corresponding group. The most experienced and respected psychology researchers account for 22.5 percent, but there is no subdivision into luminaries and inertia, because those actively cited generally continue to be. Relatively young psychologists make up 59.2 percent of the set. The borders between clusters are relatively blurred in the case of psychology, which might be a feature of the humanities, according to the authors.

“Our pilot study showed even more similarity than we’d expected in how mathematicians and physicists are clustered,” says Chebotarev. “Whereas with psychology, things are noticeably different, yet the breakdown is slightly closer to math than physics. Perhaps, there is a certain connection between psychology and math after all, as some people say.”

“The next stage of this research features more disciplines. Hopefully, we will be ready to present the new results soon,” he concludes.

I think that they are attempting to create a new way of measuring scientific progress (scientometrics) by establishing a more representative means of measuring individual contributions based on the analysis they provide of the ways in which these ‘typologies’ are expressed across various disciplines.

For anyone who wants to investigate further, you will need to be able to read Russian. You can download the paper from here on MathNet.ru,.

Here’s my best attempt at a citation for the paper,

Making a typology of scientists on the basis of bibliometric data by I. Vasilyev, P. Yu. Chebotarev. Large-scale System Control (UBS), 2018, Issue 72, Pages 138–195 (Mi ubs948)

I’m glad to see this as there is a fair degree of dissatisfaction about the current measures for scientific progress used in any number of reports on the topic. As far as I can tell, this dissatisfaction is felt internationally.

Gold, acetic acid, and proton shuttles

I think the information has been taken from Russian to English by a machine translator, as well, I’m not a chemist, so please bear with my interpretation. It seems that Russian researchers have determined why gold, inert at the macroscale, is a good catalyst at the nanoscale. From a July 28, 2015 news item on Azonano,

Being found mostly in the native state, gold is one of the oldest elements known to man. The affection to gold was determined by it’s unusual properties – heft, shine and ability to withstand oxidation and corrosion.

The combination of properties determined gold use in the jewelry and as a coinage metal. The ancient alchemists working with gold were struggled by utmost chemical resistance of this element – it did not react with concentrated acids or alkali solutions even at high temperatures. Actually, it is the chemical inertness that makes gold to appear in a native form and not as a part of a mineral.

Later analysis established that gold compounds can not only compete with traditional nickel and palladium-based catalysts in the common reactions, but to surpass them. Besides that, gold compounds often demonstrated principally novel types of reactivity compared to well-established catalysts. This allowed chemists to discover a bunch of new chemical reactions and predetermined a fascinating boom in gold catalysis that we have observed in the recent years.

A July 24, 2015 Institute of Organic Chemistry, Russian Academy of Sciences press release on EurekAlert, which also originated the news item, reveals more about the study,

Professor Ananikov and co-workers introduced gold into well-known catalytic system which led to dramatic change of the reactivity and furnished the formation of novel gold-containing complexes. The complexes appeared to be air stable and were isolated in the individual state. A single crystal X-Ray diffraction study ascertained the existence of unique structural motif in the molecule, which can not be explained within conventional mechanistic framework.

The study was carried out using both theoretical and experimental approaches. Dedicated labeling of the reagents allowed observation of molecular re-organizations. Variation of reaction conditions helped to estimate key factors governing the discovered transformation. In addition, computational study of the reaction provided the models of certain intermediate steps, which were invisible for experimental investigation. The theoretical data obtained was in excellent agreement with experiment, proposing the reaction mechanism, where a molecule of acetic acid serves as a proton shuttle, transferring the hydrogen atom between the reaction centers.

The belief of gold inactivity towards chemical transformations resulted in the fact, that organometallic chemistry of gold was developed significantly later compared to other coinage metals (like silver, nickel or copper). Today, our goal is to “introduce gold catalysis as a valuable practical tool in fine organic chemistry, competitive with other transition metal catalysts”, says Prof. Ananikov.

Here’s a link to and a citation for the paper,

Carboxylic Group-Assisted Proton Transfer in Gold-Mediated Thiolation of Alkynes by Sergey S. Zalesskiy, Victor N. Khrustalev, Alexandr Yu. Kostukovich, and Valentine P. Ananikov. Organometallics, Article ASAP DOI: 10.1021/acs.organomet.5b00210 Publication Date (Web): July 22, 2015

Copyright © 2015 American Chemical Society

This paper is behind a paywall.

Medical nanobots (nanorobots) and biocomputing; an important step in Russia

Russian researchers have reported a technique which can make logical calculations from within cells according to an Aug. 19, 2014 news item on ScienceDaily,

Researchers from the Institute of General Physics of the Russian Academy of Sciences, the Institute of Bioorganic Chemistry of the Russian Academy of Sciences and MIPT [Moscow Institute of Physics and Technology] have made an important step towards creating medical nanorobots. They discovered a way of enabling nano- and microparticles to produce logical calculations using a variety of biochemical reactions.

An Aug. 19 (?), 2014 MIPT press release, which originated the news item, provides a good beginner’s explanation of bioengineering in the context of this research,

For example, modern bioengineering techniques allow for making a cell illuminate with different colors or even programming it to die, linking the initiation  of apoptosis [cell death] to the result of binary operations.

Many scientists believe logical operations inside cells or in artificial biomolecular systems to be a way of controlling biological processes and creating full-fledged micro-and nano-robots, which can, for example, deliver drugs on schedule to those tissues where they are needed.

Calculations using biomolecules inside cells, a.k.a. biocomputing, are a very promising and rapidly developing branch of science, according to the leading author of the study, Maxim Nikitin, a 2010 graduate of MIPT’s Department of Biological and Medical Physics. Biocomputing uses natural cellular mechanisms. It is far more difficult, however, to do calculations outside cells, where there are no natural structures that could help carry out calculations. The new study focuses specifically on extracellular biocomputing.

The study paves the way for a number of biomedical technologies and differs significantly from previous works in biocomputing, which focus on both the outside and inside of cells. Scientists from across the globe have been researching binary operations in DNA, RNA and proteins for over a decade now, but Maxim Nikitin and his colleagues were the first to propose and experimentally confirm a method to transform almost any type of nanoparticle or microparticle into autonomous biocomputing structures that are capable of implementing a functionally complete set of Boolean logic gates (YES, NOT, AND and OR) and binding to a target (such as a cell) as result of a computation. This method allows for selective binding to target cells, as well as it represents a new platform to analyze blood and other biological materials.

The prefix “nano” in this case is not a fad or a mere formality. A decrease in particle size sometimes leads to drastic changes in the physical and chemical properties of a substance. The smaller the size, the greater the reactivity; very small semiconductor particles, for example, may produce fluorescent light. The new research project used nanoparticles (i.e. particles of 100 nm) and microparticles (3000 nm or 3 micrometers).

Nanoparticles were coated with a special layer, which “disintegrated” in different ways when exposed to different combinations of signals. A signal here is the interaction of nanoparticles with a particular substance. For example, to implement the logical operation “AND” a spherical nanoparticle was coated with a layer of molecules, which held a layer of spheres of a smaller diameter around it. The molecules holding the outer shell were of two types, each type reacting only to a particular signal; when in contact with two different substances small spheres separated from the surface of a nanoparticle of a larger diameter. Removing the outer layer exposed the active parts of the inner particle, and it was then able to interact with its target. Thus, the team obtained one signal in response to two signals.

For bonding nanoparticles, the researchers selected antibodies. This also distinguishes their project from a number of previous studies in biocomputing, which used DNA or RNA for logical operations. These natural proteins of the immune system have a small active region, which responds only to certain molecules; the body uses the high selectivity of antibodies to recognize and neutralize bacteria and other pathogens.

Making sure that the combination of different types of nanoparticles and antibodies makes it possible to implement various kinds of logical operations, the researchers showed that cancer cells can be specifically targeted as well. The team obtained not simply nanoparticles that can bind to certain types of cells, but particles that look for target cells when both of two different conditions are met, or when two different molecules are present or absent. This additional control may come in handy for more accurate destruction of cancer cells with minimal impact on healthy tissues and organs.

Maxim Nikitin said that although this is just as mall step towards creating efficient nanobiorobots, this area of science is very interesting and opens up great vistas for further research, if one draws an analogy between the first works in the creation of nanobiocomputers and the creation of the first diodes and transistors, which resulted in the rapid development of electronic computers.

Here’s a link to and a citation for the paper,

Biocomputing based on particle disassembly by Maxim P. Nikitin, Victoria O. Shipunova, Sergey M. Deyev, & Petr I. Nikitin. Nature Nanotechnology (2014) doi:10.1038/nnano.2014.156 Published online 17 August 2014

This paper is behind a paywall.