Tag Archives: University of Central Florida

Faster diagnostics with nanoparticles and magnetic phenomenon discovered 170 years ago

A Jan. 19, 2017 news item on ScienceDaily announces some new research from the University of Central Florida (UCF),

A UCF researcher has combined cutting-edge nanoscience with a magnetic phenomenon discovered more than 170 years ago to create a method for speedy medical tests.

The discovery, if commercialized, could lead to faster test results for HIV, Lyme disease, syphilis, rotavirus and other infectious conditions.

“I see no reason why a variation of this technique couldn’t be in every hospital throughout the world,” said Shawn Putnam, an assistant professor in the University of Central Florida’s College of Engineering & Computer Science.

A Jan. 19, 2017 UCF news release by Mark Schlueb, which originated the news item,  provides more technical detail,

At the core of the research recently published in the academic journal Small are nanoparticles – tiny particles that are one-billionth of a meter. Putnam’s team coated nanoparticles with the antibody to BSA, or bovine serum albumin, which is commonly used as the basis of a variety of diagnostic tests.

By mixing the nanoparticles in a test solution – such as one used for a blood test – the BSA proteins preferentially bind with the antibodies that coat the nanoparticles, like a lock and key.

That reaction was already well known. But Putnam’s team came up with a novel way of measuring the quantity of proteins present. He used nanoparticles with an iron core and applied a magnetic field to the solution, causing the particles to align in a particular formation. As proteins bind to the antibody-coated particles, the rotation of the particles becomes sluggish, which is easy to detect with laser optics.

The interaction of a magnetic field and light is known as Faraday rotation, a principle discovered by scientist Michael Faraday in 1845. Putnam adapted it for biological use.

“It’s an old theory, but no one has actually applied this aspect of it,” he said.

Other antigens and their unique antibodies could be substituted for the BSA protein used in the research, allowing medical tests for a wide array of infectious diseases.

The proof of concept shows the method could be used to produce biochemical immunology test results in as little as 15 minutes, compared to several hours for ELISA, or enzyme-linked immunosorbent assay, which is currently a standard approach for biomolecule detection.

Here’s a link to and a citation for the paper,

High-Throughput, Protein-Targeted Biomolecular Detection Using Frequency-Domain Faraday Rotation Spectroscopy by Richard J. Murdock, Shawn A. Putnam, Soumen Das, Ankur Gupta, Elyse D. Z. Chase, and Sudipta Seal. Small DOI: 10.1002/smll.201602862 Version of Record online: 16 JAN 2017

© 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim

This paper is behind a paywall.

Solar-powered clothing

This research comes from the University of Central Florida (US) and includes a pop culture reference to the movie “Back to the Future.”  From a Nov. 14, 2016 news item on phys.org,

Marty McFly’s self-lacing Nikes in Back to the Future Part II inspired a UCF scientist who has developed filaments that harvest and store the sun’s energy—and can be woven into textiles.

The breakthrough would essentially turn jackets and other clothing into wearable, solar-powered batteries that never need to be plugged in. It could one day revolutionize wearable technology, helping everyone from soldiers who now carry heavy loads of batteries to a texting-addicted teen who could charge his smartphone by simply slipping it in a pocket.

A Nov. 14, 2016 University of Central Florida news release (also on EurekAlert) by Mark Schlueb, which originated the news item, expands on the theme,

“That movie was the motivation,” Associate Professor Jayan Thomas, a nanotechnology scientist at the University of Central Florida’s NanoScience Technology Center, said of the film released in 1989. “If you can develop self-charging clothes or textiles, you can realize those cinematic fantasies – that’s the cool thing.”

Thomas already has been lauded for earlier ground-breaking research. Last year, he received an R&D 100 Award – given to the top inventions of the year worldwide – for his development of a cable that can not only transmit energy like a normal cable but also store energy like a battery. He’s also working on semi-transparent solar cells that can be applied to windows, allowing some light to pass through while also harvesting solar power.

His new work builds on that research.

“The idea came to me: We make energy-storage devices and we make solar cells in the labs. Why not combine these two devices together?” Thomas said.

Thomas, who holds joint appointments in the College of Optics & Photonics and the Department of Materials Science & Engineering, set out to do just that.

Taking it further, he envisioned technology that could enable wearable tech. His research team developed filaments in the form of copper ribbons that are thin, flexible and lightweight. The ribbons have a solar cell on one side and energy-storing layers on the other.

Though more comfortable with advanced nanotechnology, Thomas and his team then bought a small, tabletop loom. After another UCF scientists taught them to use it, they wove the ribbons into a square of yarn.

The proof-of-concept shows that the filaments could be laced throughout jackets or other outwear to harvest and store energy to power phones, personal health sensors and other tech gadgets. It’s an advancement that overcomes the main shortcoming of solar cells: The energy they produce must flow into the power grid or be stored in a battery that limits their portability.

“A major application could be with our military,” Thomas said. “When you think about our soldiers in Iraq or Afghanistan, they’re walking in the sun. Some of them are carrying more than 30 pounds of batteries on their bodies. It is hard for the military to deliver batteries to these soldiers in this hostile environment. A garment like this can harvest and store energy at the same time if sunlight is available.”

There are a host of other potential uses, including electric cars that could generate and store energy whenever they’re in the sun.

“That’s the future. What we’ve done is demonstrate that it can be made,” Thomas said. “It’s going to be very useful for the general public and the military and many other applications.”

The proof-of-concept shows that the filaments could be laced throughout jackets or other outwear to harvest and store energy to power phones, personal health sensors and other tech gadgets. It's an advancement that overcomes the main shortcoming of solar cells: the energy they produce must flow into the power grid or be stored in a battery that limits their portability. Credit: UCF Read more at: http://phys.org/news/2016-11-future-solar-nanotech-powered.html#jCp

The proof-of-concept shows that the filaments could be laced throughout jackets or other outwear to harvest and store energy to power phones, personal health sensors and other tech gadgets. It’s an advancement that overcomes the main shortcoming of solar cells: the energy they produce must flow into the power grid or be stored in a battery that limits their portability. Credit: UCF

Here’s a link to and a citation for the paper,

Wearable energy-smart ribbons for synchronous energy harvest and storage by Chao Li, Md. Monirul Islam, Julian Moore, Joseph Sleppy, Caleb Morrison, Konstantin Konstantinov, Shi Xue Dou, Chait Renduchintala, & Jayan Thomas. Nature Communications 7, Article number: 13319 (2016)  doi:10.1038/ncomms13319 Published online: 11 November 2016

This paper is open access.

Dexter Johnson in a Nov. 15, 2016 posting on his blog Nanoclast on the IEEE (Institute of Electrical and Electronics Engineers) provides context for this research and, in this excerpt, more insight from the researcher,

In a telephone interview with IEEE Spectrum, Thomas did concede that at this point, the supercapacitor was not capable of storing enough energy to replace the batteries entirely, but could be used to make a hybrid battery that would certainly reduce the load a soldier carries.

Thomas added: “By combining a few sets of ribbons (2-3 ribbons) in parallel and connecting these sets (3-4) in a series, it’s possible to provide enough power to operate a radio for 10 minutes. …

For anyone interested in knowing more about how this research fits into the field of textiles that harvest energy, I recommend reading Dexter’s piece.

“Breaking Me Softly” at the nanoscale

“Breaking Me Softly” sounds like a song title but in this case the phrase as been coined to describe a new technique for controlling materials at the nanoscale according to a June 6, 2016 news item on ScienceDaily,

A finding by a University of Central Florida researcher that unlocks a means of controlling materials at the nanoscale and opens the door to a new generation of manufacturing is featured online in the journal Nature.

Using a pair of pliers in each hand and gradually pulling taut a piece of glass fiber coated in plastic, associate professor Ayman Abouraddy found that something unexpected and never before documented occurred — the inner fiber fragmented in an orderly fashion.

“What we expected to see happen is NOT what happened,” he said. “While we thought the core material would snap into two large pieces, instead it broke into many equal-sized pieces.”

He referred to the technique in the Nature article title as “Breaking Me Softly.”

A June 6, 2016 University of Central Florida (UCF) news release (also on EurekAlert) by Barbara Abney, which originated the news item, expands on the theme,

The process of pulling fibers to force the realignment of the molecules that hold them together, known as cold drawing, has been the standard for mass production of flexible fibers like plastic and nylon for most of the last century.

Abouraddy and his team have shown that the process may also be applicable to multi-layered materials, a finding that could lead to the manufacturing of a new generation of materials with futuristic attributes.

“Advanced fibers are going to be pursuing the limits of anything a single material can endure today,” Abouraddy said.

For example, packaging together materials with optical and mechanical properties along with sensors that could monitor such vital sign as blood pressure and heart rate would make it possible to make clothing capable of transmitting vital data to a doctor’s office via the Internet.

The ability to control breakage in a material is critical to developing computerized processes for potential manufacturing, said Yuanli Bai, a fracture mechanics specialist in UCF’s College of Engineering and Computer Science.

Abouraddy contacted Bai, who is a co-author on the paper, about three years ago and asked him to analyze the test results on a wide variety of materials, including silicon, silk, gold and even ice.

He also contacted Robert S. Hoy, a University of South Florida physicist who specializes in the properties of materials like glass and plastic, for a better understanding of what he found.

Hoy said he had never seen the phenomena Abouraddy was describing, but that it made great sense in retrospect.

The research takes what has traditionally been a problem in materials manufacturing and turned it into an asset, Hoy said.

“Dr. Abouraddy has found a new application of necking” –  a process that occurs when cold drawing causes non-uniform strain in a material, Hoy said.  “Usually you try to prevent necking, but he exploited it to do something potentially groundbreaking.”

The necking phenomenon was discovered decades ago at DuPont and ushered in the age of textiles and garments made of synthetic fibers.

Abouraddy said that cold-drawing is what makes synthetic fibers like nylon and polyester useful. While those fibers are initially brittle, once cold-drawn, the fibers toughen up and become useful in everyday commodities. This discovery at DuPont at the end of the 1920s ushered in the age of textiles and garments made of synthetic fibers.

Only recently have fibers made of multiple materials become possible, he said.  That research will be the centerpiece of a $317 Million U.S. Department of Defense program focused on smart fibers that Abouraddy and UCF will assist with.   The Revolutionary Fibers and Textiles Manufacturing Innovation Institute (RFT-MII), led by the Massachusetts Institute of Technology, will incorporate research findings published in the Nature paper, Abouraddy said.

The implications for manufacturing of the smart materials of the future are vast.

By controlling the mechanical force used to pull the fiber and therefore controlling the breakage patterns, materials can be developed with customized properties allowing them to interact with each other and eternal forces such as the sun (for harvesting energy) and the internet in customizable ways.

A co-author on the paper, Ali P. Gordon, an associate professor in the Department of Mechanical & Aerospace Engineering and director of UCF’s Mechanics of Materials Research Group said that the finding is significant because it shows that by carefully controlling the loading condition imparted to the fiber, materials can be developed with tailored performance attributes.

“Processing-structure-property relationships need to be strategically characterized for complex material systems. By combining experiments, microscopy, and computational mechanics, the physical mechanisms of the fragmentation process were more deeply understood,” Gordon said.

Abouraddy teamed up with seven UCF scientists from the College of Optics & Photonics and the College of Engineering & Computer Science (CECS) to write the paper.   Additional authors include one researcher each from the Massachusetts Institute of Technology, Nanyang Technological University in Singapore and the University of South Florida.

Here’s a link to and a citation for the paper,

Controlled fragmentation of multimaterial fibres and films via polymer cold-drawing by Soroush Shabahang, Guangming Tao, Joshua J. Kaufman, Yangyang Qiao, Lei Wei, Thomas Bouchenot, Ali P. Gordon, Yoel Fink, Yuanli Bai, Robert S. Hoy & Ayman F. Abouraddy. Nature (2016) doi:10.1038/nature17980 Published online  06 June 2016

This paper is behind a paywall.

$1.4B for US National Nanotechnology Initiative (NNI) in 2017 budget

According to an April 1, 2016 news item on Nanowerk, the US National Nanotechnology (NNI) has released its 2017 budget supplement,

The President’s Budget for Fiscal Year 2017 provides $1.4 billion for the National Nanotechnology Initiative (NNI), affirming the important role that nanotechnology continues to play in the Administration’s innovation agenda. NNI
Cumulatively totaling nearly $24 billion since the inception of the NNI in 2001, the President’s 2017 Budget supports nanoscale science, engineering, and technology R&D at 11 agencies.

Another 9 agencies have nanotechnology-related mission interests or regulatory responsibilities.

An April 1, 2016 NNI news release, which originated the news item, affirms the Obama administration’s commitment to the NNI and notes the supplement serves as an annual report amongst other functions,

Throughout its two terms, the Obama Administration has maintained strong fiscal support for the NNI and has implemented new programs and activities to engage the broader nanotechnology community to support the NNI’s vision that the ability to understand and control matter at the nanoscale will lead to new innovations that will improve our quality of life and benefit society.

This Budget Supplement documents progress of these participating agencies in addressing the goals and objectives of the NNI. It also serves as the Annual Report for the NNI called for under the provisions of the 21st Century Nanotechnology Research and Development Act of 2003 (Public Law 108-153, 15 USC §7501). The report also addresses the requirement for Department of Defense reporting on its nanotechnology investments, per 10 USC §2358.

For additional details and to view the full document, visit www.nano.gov/2017BudgetSupplement.

I don’t seem to have posted about the 2016 NNI budget allotment but 2017’s $1.4B represents a drop of $100M since 2015’s $1.5 allotment.

The 2017 NNI budget supplement describes the NNI’s main focus,

Over the past year, the NNI participating agencies, the White House Office of Science and Technology Policy (OSTP), and the National Nanotechnology Coordination Office (NNCO) have been charting the future directions of the NNI, including putting greater focus on promoting commercialization and increasing education and outreach efforts to the broader nanotechnology community. As part of this effort, and in keeping with recommendations from the 2014 review of the NNI by the President’s Council of Advisors for Science and Technology, the NNI has been working to establish Nanotechnology-Inspired Grand Challenges, ambitious but achievable goals that will harness nanotechnology to solve National or global problems and that have the potential to capture the public’s imagination. Based upon inputs from NNI agencies and the broader community, the first Nanotechnology-Inspired Grand Challenge (for future computing) was announced by OSTP on October 20, 2015, calling for a collaborative effort to “create a new type of computer that can proactively interpret and learn from data, solve unfamiliar problems using what it has learned, and operate with the energy efficiency of the human brain.” This Grand Challenge has generated broad interest within the nanotechnology community—not only NNI agencies, but also industry, technical societies, and private foundations—and planning is underway to address how the agencies and the community will work together to achieve this goal. Topics for additional Nanotechnology-Inspired Grand Challenges are under review.

Interestingly, it also offers an explanation of the images on its cover (Note: Links have been removed),


About the cover

Each year’s National Nanotechnology Initiative Supplement to the President’s Budget features cover images illustrating recent developments in nanotechnology stemming from NNI activities that have the potential to make major contributions to National priorities. The text below explains the significance of each of the featured images on this year’s cover.


Front cover featured images (above): Images illustrating three novel nanomedicine applications. Center: microneedle array for glucose-responsive insulin delivery imaged using fluorescence microscopy. This “smart insulin patch” is based on painless microneedles loaded with hypoxia-sensitive vesicles ~100 nm in diameter that release insulin in response to high glucose levels. Dr. Zhen Gu and colleagues at the University of North Carolina (UNC) at Chapel Hill and North Carolina State University have demonstrated that this patch effectively regulates the blood glucose of type 1 diabetic mice with faster response than current pH-sensitive formulations. The inset image on the lower right shows the structure of the nanovesicles; each microneedle contains more than 100 million of these vesicles. The research was supported by the American Diabetes Association, the State of North Carolina, the National Institutes of Health (NIH), and the National Science Foundation (NSF). Left: colorized rendering of a candidate universal flu vaccine nanoparticle. The vaccine molecule, developed at the NIH Vaccine Research Center, displays only the conserved part of the viral spike and stimulates the production of antibodies to fight against the ever-changing flu virus. The vaccine is engineered from a ~13 nm ferritin core (blue) combined with a 7 nm influenza antigen (green). Image credit: NIH National Institute of Allergy and Infectious Diseases (NIAID). Right: colorized scanning electron micrograph of Ebola virus particles on an infected VERO E6 cell. Blue represents individual Ebola virus particles. The image was produced by John Bernbaum and Jiro Wada at NIAID. When the Ebola outbreak struck in 2014, the Food and Drug Administration authorized emergency use of lateral flow immunoassays for Ebola detection that use gold nanoparticles for visual interpretation of the tests.


Back cover featured images (above): Images illustrating examples of NNI educational outreach activities. Center: Comic from the NSF/NNI competition Generation Nano: Small Science Superheroes. Illustration by Amina Khan, NSF. Left of Center: Polymer Nanocone Array (biomimetic of antimicrobial insect surface) by Kyle Nowlin, UNC-Greensboro, winner from the first cycle of the NNI’s student image contest, EnvisioNano. Right of Center: Gelatin Nanoparticles in Brain (nasal delivery of stroke medication to the brain) by Elizabeth Sawicki, University of Illinois at Urbana-Champaign, winner from the second cycle of EnvisioNano. Outside right: still photo from the video Chlorination-less (water treatment method using reusable nanodiamond powder) by Abelardo Colon and Jennifer Gill, University of Puerto Rico at Rio Piedras, the winning video from the NNI’s Student Video Contest. Outside left: Society of Emerging NanoTechnologies (SENT) student group at the University of Central Florida, one of the initial nodes in the developing U.S. Nano and Emerging Technologies Student Network; photo by Alexis Vilaboy.

$5.2M in nanotechnology grants from the US Department of Agriculture (USDA)

A March 30, 2016 news item on Nanowerk announces the 2016 nanotechnology grants from the US Dept. of Agriculture (USDA),

Agriculture Secretary Tom Vilsack today [March 30, 2016] announced an investment of more than $5.2 million to support nanotechnology research at 11 universities. The universities will research ways nanotechnology can be used to improve food safety, enhance renewable fuels, increase crop yields, manage agricultural pests, and more. The awards were made through the Agriculture and Food Research Initiative (AFRI), the nation’s premier competitive, peer-reviewed grants program for fundamental and applied agricultural sciences.

A March 30, 2016 USDA news release provides more detail,

“In the seven years since the Agriculture and Food Research Initiative was established, the program has led to true innovations and ground-breaking discoveries in agriculture to combat childhood obesity, improve and sustain rural economic growth, address water availability issues, increase food production, find new sources of energy, mitigate the impacts of climate variability and enhance resiliency of our food systems, and ensure food safety. Nanoscale science, engineering, and technology are key pieces of our investment in innovation to ensure an adequate and safe food supply for a growing global population,” said Vilsack. “The President’s 2017 Budget calls for full funding of the Agriculture and Food Research Initiative so that USDA can continue to support important projects like these.”

Universities receiving funding include Auburn University in Auburn, Ala.; Connecticut Agricultural Experiment Station in New Haven, Conn.; University of Central Florida in Orlando, Fla; University of Georgia in Athens, Ga.; Iowa State University in Ames, Iowa; University of Massachusetts in Amherst, Mass.; Mississippi State University in Starkville, Miss.; Lincoln University in Jefferson City, Mo.; Clemson University in Clemson, S.C.; Virginia Polytechnic Institute and State University in Blacksburg, Va.; and University of Wisconsin in Madison, Wis.

With this funding, Auburn University proposes to improve pathogen monitoring throughout the food supply chain by creating a user-friendly system that can detect multiple foodborne pathogens simultaneously, accurately, cost effectively, and rapidly. Mississippi State University will research ways nanochitosan can be used as a combined fire-retardant and antifungal wood treatment that is also environmentally safe. Experts in nanotechnology, molecular biology, vaccines and poultry diseases at the University of Wisconsin will work to develop nanoparticle-based poultry vaccines to prevent emerging poultry infections. USDA has a full list of projects and longer descriptions available online.

Past projects include a University of Georgia project developing a bio-nanocomposites-based, disease-specific, electrochemical sensors for detecting fungal pathogen induced volatiles in selected crops; and a University of Massachusetts project creating a platform for pathogen detection in foods that is superior to the current detection method in terms of analytical time, sensitivity, and accuracy using a novel, label-free, surface-enhanced Raman scattering (SERS) mapping technique.

The purpose of AFRI is to support research, education, and extension work by awarding grants that address key problems of national, regional, and multi-state importance in sustaining all components of food and agriculture. AFRI is the flagship competitive grant program administered by USDA’s National Institute of Food and Agriculture [NIFA]. Established under the 2008 Farm Bill, AFRI supports work in six priority areas: plant health and production and plant products; animal health and production and animal products; food safety, nutrition and health; bioenergy, natural resources and environment; agriculture systems and technology; and agriculture economics and rural communities. Since AFRI’s creation, NIFA has awarded more than $89 million to solve challenges related to plant health and production; $22 million of this has been dedicated to nanotechnology research. The President’s 2017 budget request proposes to fully fund AFRI for $700 million; this amount is the full funding level authorized by Congress when it established AFRI in the 2008 Farm Bill.

Each day, the work of USDA scientists and researchers touches the lives of all Americans: from the farm field to the kitchen table and from the air we breathe to the energy that powers our country. USDA science is on the cutting edge, helping to protect, secure, and improve our food, agricultural and natural resources systems. USDA research develops and transfers solutions to agricultural problems, supporting America’s farmers and ranchers in their work to produce a safe and abundant food supply for more than 100 years. This work has helped feed the nation and sustain an agricultural trade surplus since the 1960s. Since 2009, USDA has invested $4.32 billion in research and development grants. Studies have shown that every dollar invested in agricultural research now returns over $20 to our economy.

Since 2009, NIFA has invested in and advanced innovative and transformative initiatives to solve societal challenges and ensure the long-term viability of agriculture. NIFA’s integrated research, education, and extension programs, supporting the best and brightest scientists and extension personnel, have resulted in user-inspired, groundbreaking discoveries that are combating childhood obesity, improving and sustaining rural economic growth, addressing water availability issues, increasing food production, finding new sources of energy, mitigating climate variability, and ensuring food safety.

Some Baba Brinkman rap videos for Christmas

It’s about time to catch up with Canadian rapper, Baba Brinkman who has made an industry of rapping about science issues (mostly). Here’s a brief rundown of some of his latest ventures.

He was in Paris for the climate talks (also known as World Climate Change Conference 2015 [COP21]) and produced this ‘live’ rap on Dec. 10, 2015 for the press conference on “Moral Obligation – Scientific Imperative” for Climate Matters,

The piece is part of his forthcoming album and show “The Rap Guide to Climate Chaos.”

On Dec. 18, 2015 Baba released a new music video with his take on religion and science (from a Dec. 18, 2015 posting on his blog),

The digital animation is by Steven Fahey, who is a full time animator for the Simpsons, and I’m completely blown away by the results he achieved. The video is about the evolution of religious instincts, and how the secular among us can make sense of beliefs we don’t share.

Here’s the ‘Religion evolves’ video,

A few days after Baba released his video, new research was published contradicting some of what he has in there (i.e., religion as a binding element for societies struggling to survive in ancient times. From a Dec. 21, 2015 University of Central Florida news release on EurekAlert (Note: A link has been removed),

Humans haven’t learned much in more than 2,000 years when it comes to religion and politics.

Religion has led to social tension and conflict, not just in today’s society, but dating back to 700 B.C. according to a new study published today in Current Anthropology .

University of Colorado anthropology Professor Arthur A. Joyce and University of Central Florida Associate Professor Sarah Barber found evidence in several Mexican archeological sites that contradict the long-held belief that religion acted to unite early state societies. It often had the opposite effect, the study says.

“It doesn’t matter if we today don’t share particular religious beliefs, but when people in the past acted on their beliefs, those actions could have real, material consequences,” Barber said about the team’s findings. “It really behooves us to acknowledge religion when considering political processes.”

Sounds like sage advice in today’s world that has multiple examples of politics and religion intersecting and resulting in conflict.

The team published its findings “Ensoulment, Entrapment, and Political Centralization: A Comparative Study of Religion and Politics in Later Formative Oaxaca,” after spending several years conducting field research in the lower Río Verde valley of Oaxaca, Mexico’s Pacific coastal lowlands. They compared their results with data from the highland Valley of Oaxaca.

Their study viewed archaeological evidence from 700 B.C. to A.D. 250, a period identified as a time of the emergence of states in the region. In the lower Verde, religious rituals involving offerings and the burial of people in cemeteries at smaller communities created strong ties to the local community that impeded the creation of state institutions.

And in the Valley of Oaxaca, elites became central to mediating between their communities and the gods, which eventually triggered conflict with traditional community leaders. It culminated in the emergence of a regional state with its capital at the hilltop city of Monte Albán.

“In both the Valley of Oaxaca and the Lower Río Verde Valley, religion was important in the formation and history of early cities and states, but in vastly different ways,” said Joyce, lead author on the study. “Given the role of religion in social life and politics today, that shouldn’t be too surprising.”

The conflict in the lower Río Verde valley is evident in rapid rise and fall of its state institutions. At Río Viejo, the capital of the lower Verde state, people had built massive temples by AD 100. Yet these impressive, labor-intensive buildings, along with many towns throughout the valley, were abandoned a little over a century later.

“An innovative aspect of our research is to view the burials of ancestors and ceremonial offerings in the lower Verde as essential to these ancient communities,” said Joyce, whose research focuses on both political life and ecology in ancient Mesoamerica. “Such a perspective is also more consistent with the worldviews of the Native Americans that lived there.”

Here’s a link to and a citation for the paper,

Ensoulment, Entrapment, and Political Centralization A Comparative Study of Religion and Politics in Later Formative Oaxaca by Arthur A. Joyce and Sarah B. Barber. Current Anthropology Vol. 56, No. 6 (December 2015), pp. 819-847 DOI: 10.1086/683998

This paper is behind a paywall.

Getting back to Baba, having research, which contradicts or appears to contradict your position, suddenly appear is part of the scientific process. Making your work scientifically authentic adds pressure for a performer or artist, on the other hand, it also blesses that performer or artist with credibility. In any event, it’s well worth checking out Baba’s website and, for anyone, who’s wanted to become a patron of the arts (or of a particular rapper), there’s this Dec. 3, 2015 posting on Baba’s blog about Patreon,

Every year or so since 2010 I’ve reached out to my friends and fans asking for help with a Kickstarter or IndieGogo campaign to fund my latest album or video project. Well now I’m hoping to put an end to that regular cycle with the help of Patreon, a site that lets fans become patrons with exclusive access to the artists they support and the work they help create.

Click here to visit Patreon.com/BabaBrinkman

Good luck Baba. (BTW, Currently living in New York with his scientist wife and child, he’s originally from the Canadian province of British Columbia.)

Corrections: Hybrid Photonic-Nanomechanical Force Microscopy uses vibration for better chemical analysis

*ETA  Nov. 4, 2015: I’m apologizing to anyone wishing to read this posting as it’s a bit of a mess. I deeply regret mishandling the situation. In future, I shall not be taking any corrections from individual researchers to materials such as news releases that have been issued by an institution. Whether or not the individual researchers are happy with how their contributions or how a colleague’s contributions or how their home institutions have been characterized is a matter for them and their home institutions.

The August 10, 2015 ORNL news release with all the correct details has been added to the end of this post.*

A researcher at the University of Central Florida (UCF) has developed a microscope that uses vibrations for better analysis of chemical composition. From an Aug. 10, 2015 news item on Nanowerk,

It’s a discovery that could have promising implications for fields as varied as biofuel production, solar energy, opto-electronic devices, pharmaceuticals and medical research.

“What we’re interested in is the tools that allow us to understand the world at a very small scale,” said UCF professor Laurene Tetard, formerly of the Oak Ridge National Laboratory. “Not just the shape of the object, but its mechanical properties, its composition and how it evolves in time.”

An Aug. 10, 2015 UCF news release (also on EurekAlert), which originated the news item, describes the limitations of atomic force microscopy and gives a few details about the hybrid microscope (Note: A link has been removed),

For more than two decades, scientists have used atomic force microscopy – a probe that acts like an ultra-sensitive needle on a record player – to determine the surface characteristics of samples at the microscopic scale. A “needle” that comes to an atoms-thin point traces a path over a sample, mapping the surface features at a sub-cellular level [nanoscale].

But that technology has its limits. It can determine the topographical characteristics of [a] sample, but it can’t identify its composition. And with the standard tools currently used for chemical mapping, anything smaller than roughly half a micron is going to look like a blurry blob, so researchers are out of luck if they want to study what’s happening at the molecular level.

A team led by Tetard has come up with a hybrid form of that technology that produces a much clearer chemical image. As described Aug. 10 in the journal Nature Nanotechnology, Hybrid Photonic-Nanomechanical Force Microscopy (HPFM) can discern a sample’s topographic characteristics together with the chemical properties at a much finer scale.

The HPFM method is able to identify materials based on differences in the vibration produced when they’re subjected to different wavelengths of light – essentially a material’s unique “fingerprint.”

“What we are developing is a completely new way of making that detection possible,” said Tetard, who has joint appointments to UCF’s Physics Department, Material Science and Engineering Department and the NanoScience Technology Center.

The researchers proved the effectiveness of HPFM while examining samples from an eastern cottonwood tree, a potential source of biofuel. By examining the plant samples at the nanoscale, the researchers for the first time were able to determine the molecular traits of both untreated and chemically processed cottonwood inside the plant cell walls.

The research team included Tetard; Ali Passian, R.H. Farahi and Brian Davison, all of Oak Ridge National Laboratory; and Thomas Thundat of the University of Alberta.

Long term, the results will help reveal better methods for producing the most biofuel from the cottonwood, a potential boon for industry. Likewise, the new method could be used to examine samples of myriad plants to determine whether they’re good candidates for biofuel production.

Potential uses of the technology go beyond the world of biofuel. Continued research may allow HPFM to be used as a probe so, for instance, it would be possible to study the effect of new treatments being developed to save plants such as citrus trees from bacterial diseases rapidly decimating the citrus industry, or study fundamental photonically-induced processes in complex systems such as in solar cell materials or opto-electronic devices.

Here’s a link to and a citation for the paper,

Opto-nanomechanical spectroscopic material characterization by L. Tetard, A. Passian, R. H. Farahi, T. Thundat, & B. H. Davison. Nature Nanotechnology (2015) doi:10.1038/nnano.2015.168 Published online 10 August 2015

This paper is behind a paywall.

*ETA August 27, 2015:

August 10, 2015 ORNL news release (Note: Funding information and a link to the paper [previously given] have been removed):

A microscope being developed at the Department of Energy’s Oak Ridge National Laboratory will allow scientists studying biological and synthetic materials to simultaneously observe chemical and physical properties on and beneath the surface.

The Hybrid Photonic Mode-Synthesizing Atomic Force Microscope is unique, according to principal investigator Ali Passian of ORNL’s Quantum Information System group. As a hybrid, the instrument, described in a paper published in Nature Nanotechnology, combines the disciplines of nanospectroscopy and nanomechanical microscopy.

“Our microscope offers a noninvasive rapid method to explore materials simultaneously for their chemical and physical properties,” Passian said. “It allows researchers to study the surface and subsurface of synthetic and biological samples, which is a capability that until now didn’t exist.”

ORNL’s instrument retains all of the advantages of an atomic force microscope while simultaneously offering the potential for discoveries through its high resolution and subsurface spectroscopic capabilities.

“The originality of the instrument and technique lies in its ability to provide information about a material’s chemical composition in the broad infrared spectrum of the chemical composition while showing the morphology of a material’s interior and exterior with nanoscale – a billionth of a meter – resolution,” Passian said.

Researchers will be able to study samples ranging from engineered nanoparticles and nanostructures to naturally occurring biological polymers, tissues and plant cells.

The first application as part of DOE’s BioEnergy Science Center was in the examination of plant cell walls under several treatments to provide submicron characterization. The plant cell wall is a layered nanostructure of biopolymers such as cellulose. Scientists want to convert such biopolymers to free the useful sugars and release energy.

An earlier instrument, also invented at ORNL, provided imaging of poplar cell wall structures that yielded unprecedented topological information, advancing fundamental research in sustainable biofuels.

Because of this new instrument’s impressive capabilities, the researcher team envisions broad applications.
“An urgent need exists for new platforms that can tackle the challenges of subsurface and chemical characterization at the nanometer scale,” said co-author Rubye Farahi. “Hybrid approaches such as ours bring together multiple capabilities, in this case, spectroscopy and high-resolution microscopy.”

Looking inside, the hybrid microscope consists of a photonic module that is incorporated into a mode-synthesizing atomic force microscope. The modular aspect of the system makes it possible to accommodate various radiation sources such as tunable lasers and non-coherent monochromatic or polychromatic sources.

ETA2 August 27, 2015: I’ve received an email from one of the paper’s authors (RH Farahi of the US Oak Ridge National Laboratory [ORNL]) who claims some inaccuracies in this piece.  The news release supplied by the University of Central Florida states that Dr. Tetard led the team and that is not so. According to Dr. Farahi, she had a postdoctoral position on the team which she left two years ago. You might also get the impression that some of the work was performed at the University of Central Florida. That is not so according to Dr. Farahi.  As a courtesy Dr. Tetard was retained as first author of the paper.

*Nov. 4, 2015: I suspect some of the misunderstanding was due to overeagerness and/or time pressures. Whoever wrote the news release may have made some assumptions. It’s very easy to make a mistake when talking to an ebullient scientist who can unintentionally lead you to believe something that’s not so. I worked in a high tech company and believed that there was some new software being developed which turned out to be a case of high hopes. Luckily, I said something that triggered a rapid rebuttal to the fantasies. Getting back to this situation, other contributing factors could include the writer not having time to get the news release reviewed the scientist or the scientist skimming the release and missing a few bits due to time pressure.*

Silver nanoparticles and wormwood tackle plant-killing fungus

I’m back in Florida (US), so to speak. Last mentioned here in an April 7, 2015 post about citrus canker and zinkicide, a story about a disease which endangers citrus production in the US, this latest story concerns a possible solution to the problem of a fungus, which attacks ornamental horticultural plants in Florida. From a May 5, 2015 news item on Azonano,

Deep in the soil, underneath more than 400 plant and tree species, lurks a lethal fungus threatening Florida’s $15 billion a year ornamental horticulture industry.

But University of Florida plant pathologist G. Shad Ali has found an economical and eco-friendly way to combat the plant destroyer known as phytophthora before it attacks the leaves and roots of everything from tomato plants to oak trees.

Ali and a team of researchers with UF’s Institute of Food and Agricultural Sciences, along with the University of Central Florida and the New Jersey Institute of Technology, have found that silver nanoparticles produced with an extract of wormwood, an herb with strong antioxidant properties, can stop several strains of the deadly fungus.

A May 4, 2015 University of Florida news release, which originated the news item, describes the work in more detail,

“The silver nanoparticles are extremely effective in eliminating the fungus in all stages of its life cycle,” Ali said. “In addition, it has no adverse effects on plant growth.” [emphasis mine]

The silver nanoparticles measure 5 to 100 nanometers in diameter – about one one-thousandth the width of a human hair. Once the nanoparticles are sprayed onto a plant, they shield it from fungus. Since the nanoparticles display multiple ways of inhibiting fungus growth, the chances of pathogens developing resistance to them are minimized, Ali said. Because of that, they may be used for controlling fungicide-resistant plant pathogens more effectively.

That’s good news for the horticulture industry. Worldwide crop losses due to phytophthora fungus diseases are estimated to be in the multibillion dollar range, with $6.7 billion in losses in potato crops due to late blight – the cause of the Irish Potato Famine in the mid-1800s when more than 1 million people died – and $1 billion to $2 billion in soybean loss.

Silver nanoparticles are being investigated for applications in various industries, including medicine, diagnostics, cosmetics and food processing.  They already are used in wound dressings, food packaging and in consumer products such as textiles and footwear for fighting odor-causing microorganisms.

Other members of the UF research team were Mohammad Ali, a visiting doctoral student from the Quaid-i-Azam University, Islamabad, Pakistan; David Norman and Mary Brennan with the University of Florida’s Plant Pathology-Mid Florida Research and Education Center; Bosung Kim with the University of Central Florida’s chemistry department; Kevin Belfield with the College of Science and Liberal Arts at the New Jersey Institute of Technology and the University of Central Florida’s chemistry department.

Ali’s comment about silver nanoparticles not having any adverse effects on plant growth is in contrast to findings by Mark Wiesner and other researchers at  Duke University (North Carolina, US). From my Feb. 28, 2013 posting (which also features a Finnish-Estonia study showing no adverse effects from silver nanoparticles  in crustaceans),

… there’s a study from Duke University suggests that silver nanoparticles in wastewater which is later put to agricultural use may cause problems. From the Feb. 27, 2013 news release on EurekAlert,

In experiments mimicking a natural environment, Duke University researchers have demonstrated that the silver nanoparticles used in many consumer products can have an adverse effect on plants and microorganisms.

The main route by which these particles enter the environment is as a by-product of water and sewage treatment plants. [emphasis] The nanoparticles are too small to be filtered out, so they and other materials end up in the resulting “sludge,” which is then spread on the land surface as a fertilizer.

The researchers found that one of the plants studied, a common annual grass known as Microstegium vimeneum, had 32 percent less biomass in the mesocosms treated with the nanoparticles. Microbes were also affected by the nanoparticles, Colman [Benjamin Colman, a post-doctoral fellow in Duke’s biology department and a member of the Center for the Environmental Implications of Nanotechnology (CEINT)] said. One enzyme associated with helping microbes deal with external stresses was 52 percent less active, while another enzyme that helps regulate processes within the cell was 27 percent less active. The overall biomass of the microbes was also 35 percent lower, he said.

“Our field studies show adverse responses of plants and microorganisms following a single low dose of silver nanoparticles applied by a sewage biosolid,” Colman said. “An estimated 60 percent of the average 5.6 million tons of biosolids produced each year is applied to the land for various reasons, and this practice represents an important and understudied route of exposure of natural ecosystems to engineered nanoparticles.”

“Our results show that silver nanoparticles in the biosolids, added at concentrations that would be expected, caused ecosystem-level impacts,” Colman said. “Specifically, the nanoparticles led to an increase in nitrous oxide fluxes, changes in microbial community composition, biomass, and extracellular enzyme activity, as well as species-specific effects on the above-ground vegetation.”

Getting back to Florida, you can find Ali’s abstract here,

Inhibition of Phytophthora parasitica and P. capsici by silver nanoparticles synthesized using aqueous extract of Artemisia absinthium by Mohammad Ali, Bosung Kim, Kevin Belfield, David J. Norman, Mary Brennan, & Gul Shad Ali. Phytopathology  http://dx.doi.org/10.1094/PHYTO-01-15-0006-R Published online April 14, 2015

This paper is behind a paywall.

For anyone who recognized that wormwood is a constituent of Absinthe, a liquor that is banned in many parts of the world due to possible side effects associated with the wormwood, here’s more about it from the Wormwood overview page on WebMD (Note: Links have been removed),

Wormwood is an herb. The above-ground plant parts and oil are used for medicine.

Wormwood is used in some alcoholic beverages. Vermouth, for example, is a wine beverage flavored with extracts of wormwood. Absinthe is another well-known alcoholic beverage made with wormwood. It is an emerald-green alcoholic drink that is prepared from wormwood oil, often along with other dried herbs such as anise and fennel. Absinthe was popularized by famous artists and writers such as Toulouse-Lautrec, Degas, Manet, van Gogh, Picasso, Hemingway, and Oscar Wilde. It is now banned in many countries, including the U.S. But it is still allowed in European Union countries as long as the thujone content is less than 35 mg/kg. Thujone is a potentially poisonous chemical found in wormwood. Distilling wormwood in alcohol increases the thujone concentration.

Returning to the matter at hand, as I’ve noted previously elsewhere, research into the toxic effects associated with nanomaterials (e.g. silver nanoparticles) is a complex process.

New $1 test for early stage prostate cancer more sensitive and exact than standard tests

An April 5, 2015 news item on Nanotechnology Now describes an exciting development in testing for cancer,

The simple test developed by University of Central Florida scientist Qun “Treen” Huo holds the promise of earlier detection of one of the deadliest cancers among men. It would also reduce the number of unnecessary and invasive biopsies stemming from the less precise PSA test that’s now used.

“It’s fantastic,” said Dr. Inoel Rivera, a urologic oncologist at Florida Hospital Cancer Institute, which collaborated with Huo on the recent pilot studies. “It’s a simple test. It’s much better than the test we have right now, which is the PSA, and it’s cost-effective.”

An April 3, 2015 University of Central Florida (UCF) news release by Mark Schlueb (also on EurekAlert), which originated the news item, describes the test in more detail,

When a cancerous tumor begins to develop, the body mobilizes to produce antibodies. Huo’s test detects that immune response using gold nanoparticles about 10,000 times smaller than a freckle.

When a few drops of blood serum from a finger prick are mixed with the gold nanoparticles, certain cancer biomarkers cling to the surface of the tiny particles, increasing their size and causing them to clump together.

Among researchers, gold nanoparticles are known for their extraordinary efficiency at absorbing and scattering light. Huo and her team at UCF’s NanoScience Technology Center developed a technique known as nanoparticle-enabled dynamic light scattering assay (NanoDLSay) to measure the size of the particles by analyzing the light they throw off. That size reveals whether a patient has prostate cancer and how advanced it may be.

And although it uses gold, the test is cheap. A small bottle of nanoparticles suspended in water costs about $250, and contains enough for about 2,500 tests.

“What’s different and unique about our technique is it’s a very simple process, and the material required for the test is less than $1,” Huo said. “And because it’s low-cost, we’re hoping most people can have this test in their doctor’s office. If we can catch this cancer in its early stages, the impact is going to be big.”

After lung cancer, prostate cancer is the second-leading killer cancer among men, with more than 240,000 new diagnoses and 28,000 deaths every year. The most commonly used screening tool is the PSA, but it produces so many false-positive results – leading to painful biopsies and extreme treatments – that one of its discoverers recently called it “hardly more effective than a coin toss.”

Pilot studies found Huo’s technique is significantly more exact. The test determines with 90 to 95 percent confidence that the result is not false-positive. When it comes to false-negatives, there is 50 percent confidence – not ideal, but still significantly higher than the PSA’s 20 percent – and Huo is working to improve that number.

The results of the pilot studies were published recently in ACS Applied Materials & Interfaces. Huo is also scheduled to present her findings in June at the TechConnect World Innovation Summit & Expo in suburban Washington, D.C.

Huo’s team is pursuing more extensive clinical validation studies with Florida Hospital and others, including the VA Medical Center Orlando. She hopes to complete major clinical trials and see the test being used by physicians in two to three years.

Huo also is researching her technique’s effectiveness as a screening tool for other tumors.

“Potentially, we could have a universal screening test for cancer,” she said. “Our vision is to develop an array of blood tests for early detection and diagnosis of all major cancer types, and these blood tests are all based on the same technique and same procedure.”

Huo co-founded Nano Discovery Inc., a startup company headquartered in a UCF Business Incubator, to commercialize the new diagnostic test. The company manufacturers a test device specifically for medical research and diagnostic purposes.

Here’s a link to and a citation for the study,

Gold Nanoparticle-Enabled Blood Test for Early Stage Cancer Detection and Risk Assessment by Tianyu Zheng, Nickisha Pierre-Pierre, Xin Yan, Qun Huo, Alvin J.O. Almodovar, Felipe Valerio, Inoel Rivera-Ramirez, Elizabeth Griffith, David D. Decker, Sixue Chen, and Ning Zhu. ACS Appl. Mater. Interfaces, 2015, 7 (12), pp 6819–6827 DOI: 10.1021/acsami.5b00371

Publication Date (Web): March 10, 2015

This paper is behind a paywall.

You can find out more about Huo’s company, Nano Discovery Inc. here.

Citrus canker, Florida, and Zinkicide

Found in Florida orchards in 2005, a citrus canker, citrus greening, poses a serious threat to the US state’s fruit industry. An April 2, 2105 news item on phys.org describes a possible solution to the problem,

Since it was discovered in South Florida in 2005, the plague of citrus greening has spread to nearly every grove in the state, stoking fears among growers that the $10.7 billion-a-year industry may someday disappear.

Now the U.S. Department of Agriculture has awarded the University of Florida a $4.6 million grant aimed at testing a potential new weapon in the fight against citrus greening: Zinkicide, a bactericide invented by a nanoparticle researcher at the University of Central Florida.

An April 2, 2015 University of Central Florida news release by Mark Schlueb (also on EurekAlert), which originated the news item, describes the problem and the solution (Zinkicide),

Citrus greening – also known by its Chinese name, Huanglongbing, or HLB – causes orange, grapefruit and other citrus trees to produce small, bitter fruit that drop prematurely and is unsuitable for sale or juice. Eventually, infected trees die. Florida has lost tens of thousands of acres to the disease.

“It’s a hundred-year-old disease, but to date there is no cure. It’s a killer, a true killer for the citrus industry,” said Swadeshmukul Santra, associate professor in the NanoScience Technology Center at UCF.

The bacteria that causes HLB is carried by the Asian citrus psyllid, a tiny insect that  feeds on leaves and stems of infected citrus trees, then carries the bacteria to healthy trees.

Zinkicide, developed by Santra, is designed to kill the bacteria.

The $4.6 million grant is the largest of five totaling $23 million that were recently announced by the USDA’s National Institute of Food and Agriculture.

The evaluation of Zinkicide is a multi-institute project involving 13 investigators from six institutions. Evan Johnson of UF’s [University of Florida] Citrus Research and Education Center at Lake Alfred is the project director, and there are a dozen co-principal investigators from UF, UCF, Oak Ridge National Laboratory (ORNL), Auburn University, New Mexico State University and The Ohio State University.

”Managing systemic diseases like HLB is a difficult challenge that has faced plant pathologists for many years,” said Johnson “It is a privilege to work with an excellent team of researchers from many different disciplines with the goal of developing new tools that are both effective and safe.”

A portion of the grant money, $1.4 million, flows to UCF, where Santra leads a team that also includes Andre Gesquiere, Laurene Tetard and the Oak Ridge National Laboratory collaborator, Loukas Petridis.

HLB control is difficult because current bactericidal sprays, such as copper, simply leave a protective film on the outside of a plant. The insect-transmitted bacteria bypasses that barrier and lives inside a tree’s fruit, stems and roots, in the vascular tissue known as the phloem. There, it deprives the tree of carbohydrate and nutrients, causing root loss and ultimately death. For a bactericide to be effective against HLB, it must be able to move within the plant, too.

Zinkicide is a nanoparticle smaller than a single microscopic cell, and researchers are cautiously optimistic it will be able to move systemically from cell to cell to kill the bacteria that cause HLB.

“The bacteria hide inside the plant in the phloem region,” Santra said. “If you spray and your compound doesn’t travel to the phloem region, then you cannot treat HLB.”

Zinkicide is derived from ingredients which are found in plants, and is designed to break down and be metabolized after its job is done. [emphasis mine]

It’s the first step in a years-long process to bring a treatment to market. UF will lead five years of greenhouse and field trials on grapefruit and sweet orange to determine the effectiveness of Zinkicide and the best method and timing of application.

The project also includes research to study where the nanoparticles travel within the plant, understand how they interact with plant tissue and how long they remain before breaking down. [emphasis mine]

If effective, the bactericide could have a substantial role in combatting HLB in Florida, and in other citrus-producing states and countries. It would also likely be useful for control of other bacterial pathogens infecting other crops.

The Zinkicide project builds as a spinoff from previous collaborations between Santra and UF’s Jim Graham, at the Citrus Research and Education Center to develop alternatives to copper for citrus canker control.

The previous Citrus Research and Education Foundation (CRDF)-funded Zinkicide project has issued three reports, for June 30, 2014, Sept. 30, 2014, and Dec. 31, 2014. This project’s completion date is May 2015. The reports which are remarkably succinct, consisting of two paragraphs, can be found here.

Oddly, the UCF news release doesn’t mention that Zinkicide (although it can be inferred) is a zinc particulate (I’m guessing they mean zinc nanoparticle) as noted on the CRDF project webpage. Happily, they are researching what happens after the bactericide has done its work on the infection. It’s good to see a life cycle approach to this research.