Monthly Archives: August 2020

Filmmaking beetles wearing teeny, tiny wireless cameras

Researchers at the University of Washington have developed a tiny camera that can ride aboard an insect. Here a Pinacate beetle explores the UW campus with the camera on its back. Credit: Mark Stone/University of Washington

Scientists at Washington University have created a removable wireless camera backpack for beetles and for tiny robots resembling beetles. I’m embedding a video shot by a beetle later in this post with a citation and link for the paper, near the end of this post where you’ll also find links to my other posts on insects and technology.

As for the latest on insects and technology, there’s a July 15, 2020 news item on ScienceDaily,

In the movie “Ant-Man,” the title character can shrink in size and travel by soaring on the back of an insect. Now researchers at the University of Washington have developed a tiny wireless steerable camera that can also ride aboard an insect, giving everyone a chance to see an Ant-Man view of the world.

The camera, which streams video to a smartphone at 1 to 5 frames per second, sits on a mechanical arm that can pivot 60 degrees. This allows a viewer to capture a high-resolution, panoramic shot or track a moving object while expending a minimal amount of energy. To demonstrate the versatility of this system, which weighs about 250 milligrams — about one-tenth the weight of a playing card — the team mounted it on top of live beetles and insect-sized robots.

A July 15, 2020 University of Washington news release (also on EurekAlert), which originated the news item, provides more technical detail (although I still have a few questions) about the work,

“We have created a low-power, low-weight, wireless camera system that can capture a first-person view of what’s happening from an actual live insect or create vision for small robots,” said senior author Shyam Gollakota, a UW associate professor in the Paul G. Allen School of Computer Science & Engineering. “Vision is so important for communication and for navigation, but it’s extremely challenging to do it at such a small scale. As a result, prior to our work, wireless vision has not been possible for small robots or insects.”

Typical small cameras, such as those used in smartphones, use a lot of power to capture wide-angle, high-resolution photos, and that doesn’t work at the insect scale. While the cameras themselves are lightweight, the batteries they need to support them make the overall system too big and heavy for insects — or insect-sized robots — to lug around. So the team took a lesson from biology.

“Similar to cameras, vision in animals requires a lot of power,” said co-author Sawyer Fuller, a UW assistant professor of mechanical engineering. “It’s less of a big deal in larger creatures like humans, but flies are using 10 to 20% of their resting energy just to power their brains, most of which is devoted to visual processing. To help cut the cost, some flies have a small, high-resolution region of their compound eyes. They turn their heads to steer where they want to see with extra clarity, such as for chasing prey or a mate. This saves power over having high resolution over their entire visual field.”

To mimic an animal’s vision, the researchers used a tiny, ultra-low-power black-and-white camera that can sweep across a field of view with the help of a mechanical arm. The arm moves when the team applies a high voltage, which makes the material bend and move the camera to the desired position. Unless the team applies more power, the arm stays at that angle for about a minute before relaxing back to its original position. This is similar to how people can keep their head turned in one direction for only a short period of time before returning to a more neutral position.

“One advantage to being able to move the camera is that you can get a wide-angle view of what’s happening without consuming a huge amount of power,” said co-lead author Vikram Iyer, a UW doctoral student in electrical and computer engineering. “We can track a moving object without having to spend the energy to move a whole robot. These images are also at a higher resolution than if we used a wide-angle lens, which would create an image with the same number of pixels divided up over a much larger area.”

The camera and arm are controlled via Bluetooth from a smartphone from a distance up to 120 meters away, just a little longer than a football field.

The researchers attached their removable system to the backs of two different types of beetles — a death-feigning beetle and a Pinacate beetle. Similar beetles have been known to be able to carry loads heavier than half a gram, the researchers said.

“We made sure the beetles could still move properly when they were carrying our system,” said co-lead author Ali Najafi, a UW doctoral student in electrical and computer engineering. “They were able to navigate freely across gravel, up a slope and even climb trees.”

The beetles also lived for at least a year after the experiment ended. [emphasis mine]

“We added a small accelerometer to our system to be able to detect when the beetle moves. Then it only captures images during that time,” Iyer said. “If the camera is just continuously streaming without this accelerometer, we could record one to two hours before the battery died. With the accelerometer, we could record for six hours or more, depending on the beetle’s activity level.”

The researchers also used their camera system to design the world’s smallest terrestrial, power-autonomous robot with wireless vision. This insect-sized robot uses vibrations to move and consumes almost the same power as low-power Bluetooth radios need to operate.

The team found, however, that the vibrations shook the camera and produced distorted images. The researchers solved this issue by having the robot stop momentarily, take a picture and then resume its journey. With this strategy, the system was still able to move about 2 to 3 centimeters per second — faster than any other tiny robot that uses vibrations to move — and had a battery life of about 90 minutes.

While the team is excited about the potential for lightweight and low-power mobile cameras, the researchers acknowledge that this technology comes with a new set of privacy risks.

“As researchers we strongly believe that it’s really important to put things in the public domain so people are aware of the risks and so people can start coming up with solutions to address them,” Gollakota said.

Applications could range from biology to exploring novel environments, the researchers said. The team hopes that future versions of the camera will require even less power and be battery free, potentially solar-powered.

“This is the first time that we’ve had a first-person view from the back of a beetle while it’s walking around. There are so many questions you could explore, such as how does the beetle respond to different stimuli that it sees in the environment?” Iyer said. “But also, insects can traverse rocky environments, which is really challenging for robots to do at this scale. So this system can also help us out by letting us see or collect samples from hard-to-navigate spaces.”

###

Johannes James, a UW mechanical engineering doctoral student, is also a co-author on this paper. This research was funded by a Microsoft fellowship and the National Science Foundation.

I’m surprised there’s no funding from a military agency as the military and covert operation applications seem like an obvious pairing. In any event, here’s a link to and a citation for the paper,

Wireless steerable vision for live insects and insect-scale robots by Vikram Iyer, Ali Najafi, Johannes James, Sawyer Fuller, and Shyamnath Gollakota. Science Robotics 15 Jul 2020: Vol. 5, Issue 44, eabb0839 DOI: 10.1126/scirobotics.abb0839

This paper is behind a paywall.

Video and links

As promised, here’s the video the scientists have released,

These posts feature some fairly ruthless uses of the insects.

  1. The first mention of insects and technology here is in a July 27, 2009 posting titled: Nanotechnology enables robots and human enhancement: part 4. The mention is in the second to last paragraph of the post. Then,.
  2. A November 23, 2011 post titled: Cyborg insects and trust,
  3. A January 9, 2012 post titled: Controlling cyborg insects,
  4. A June 26, 2013 post titled: Steering cockroaches in the lab and in your backyard—cutting edge neuroscience, and, finally,
  5. An April 11, 2014 post titled: Computerized cockroaches as precursors to new healing techniques.

As for my questions (how do you put the backpacks on the beetles? is there a strap, is it glue, is it something else? how heavy is the backpack and camera? how old are the beetles you use for this experiment? where did you get the beetles from? do you have your own beetle farm where you breed them?), I’ll see if I can get some answers.

Replacing nanotechnology-enabled oil spill solutions with dog fur?

Coincidentally or not, this research from Australia was announced a little more than a month after reports of a major oil spill in the Russian Arctic. A July 10, 2020 news item on phys.org announces a new technology for mopping up oil spills (Note: Links have been removed),

Oil spill disasters on land cause long-term damage for communities and the natural environment, polluting soils and sediments and contaminating groundwater.

Current methods using synthetic sorbent materials can be effective for cleaning up oil spills, but these materials are often expensive and generate large volumes of non-biodegradable plastic wastes. Now the first comparison of natural-origin sorbent materials for land-based oil spills, including peat moss, recycled human hair, and dog fur, shows that sustainable, cheaper and biodegradable options can be developed.

The University of Technology Sydney (UTS) project found that dog fur and human hair products—recycled from salon wastes and dog groomers—can be just as good as synthetic fabrics at cleaning up crude oil spills on hard land surfaces like highway roads, pavement, and sealed concrete floors. Polypropylene, a plastic, is a widely-used fabric used to clean up oil spills in aquatic environments.

A July 9, 2020 Univesity of Technology Sydney press release on EurekAlert completes the story,

“Dog fur in particular was surprisingly good at oil spill clean-up, and felted mats from human hair and fur were very easy to apply and remove from the spills.” lead author of the study, UTS Environmental Scientist Dr Megan Murray, said. Dr Murray investigates environmentally-friendly solutions for contamination and leads The Phyto Lab research group at UTS School of Life Sciences.

“This is a very exciting finding for land managers who respond to spilled oil from trucks, storage tanks, or leaking oil pipelines. All of these land scenarios can be treated effectively with sustainable-origin sorbents,” she said.

The sorbents tested included two commercially-available products, propylene and loose peat moss, as well as sustainable-origin prototypes including felted mats made of dog fur and human hair. Prototype oil-spill sorbent booms filled with dog fur and human hair were also tested. Crude oil was used to replicate an oil spill. The results of the study are published in Environments.

The research team simulated three types of land surfaces; non-porous hard surfaces, semi-porous surfaces, and sand, to recreate common oil-spill scenarios.

“We found that loose peat moss is not as effective at cleaning up oil spills on land compared to dog fur and hair products, and it is not useful at all for sandy environments.” Dr Murray said.

“Based on this research, we recommend peat moss is no longer used for this purpose. Given that peat moss is a limited resource and harvesting it requires degrading wetland ecosystems, we think this is a very important finding.” she said.

The research concluded that, for now, sandy environments like coastal beaches can still benefit from the use of polypropylene sorbents, but further exploration of sustainable-origin sorbents is planned.

The researchers say that future applications from the research include investigating felted mats of sustainable-origin sorbents for river bank stabilisation, [emphases mine] as well as the removal of pollutants from flowing polluted waters, similar to existing membrane technology.

Here’s a link to and a citation for the study,

Decontaminating Terrestrial Oil Spills: A Comparative Assessment of Dog Fur, Human Hair, Peat Moss and Polypropylene Sorbents by Megan L. Murray, Soeren M. Poulsen and Brad R. Murray. Environments 2020, 7(7), 52; DOI: https://doi.org/10.3390/environments7070052 Published: 8 July 2020 (This article belongs to the Special Issue Pollution Prevention/Environmental Sustainability for Industry)

This paper is open access.

As for the Russian oil spill

A June 4, 2020 British Broadcasting Corporation (BBC) news online article outlines the situation regarding the oil spill and the steps being taken to deal with it,

Russia’s President Vladimir Putin has declared a state of emergency after 20,000 tonnes of diesel oil leaked into a river within the Arctic Circle.

The spill happened when a fuel tank at a power plant near the Siberian city of Norilsk collapsed last Friday [May 29, 2020].

The power plant’s director Vyacheslav Starostin has been taken into custody until 31 July, but not yet charged.

The plant is owned by a subsidiary of Norilsk Nickel, which is the world’s leading nickel and palladium producer.

The Russian Investigative Committee (SK) has launched a criminal case over the pollution and alleged negligence, as there was reportedly a two-day delay in informing the Moscow authorities about the spill.

Ground subsidence beneath the fuel storage tanks is believed to have caused the spill. Arctic permafrost has been melting in exceptionally warm weather [more information about the weather towards the end of this posting] for this time of year.

Russian Minister for Emergencies Yevgeny Zinichev told Mr Putin that the Norilsk plant had spent two days trying to contain the spill, before alerting his ministry.

The leaked oil drifted some 12km (7.5 miles) from the accident site, turning long stretches of the Ambarnaya river crimson red.

The leaked diesel oil drifted some 12km (7.5 miles) from the site of the accident [downloaded from https://www.bbc.com/news/world-europe-52915807]

Getting back to the June 4, 2020 British Broadcasting Corporation (BBC) news online article,

“Why did government agencies only find out about this two days [May 29, 2020?) after the fact?” he asked the subsidiary’s chief, Sergei Lipin. “Are we going to learn about emergency situations from social media?”

The region’s governor, Alexander Uss, had earlier told President Putin that he became aware of the oil spill on Sunday [May 31, 2020] after “alarming information appeared in social media”.

The spill has contaminated a 350 sq km (135 sq mile) area, state media report.

The state of emergency means extra forces are going to the area to assist with the clean-up operation.

The accident is believed to be the second largest in modern Russian history in terms of volume, an expert from the World Wildlife Fund, Alexei Knizhnikov, told the AFP [Agence France Presse] news agency.

The incident has prompted stark warnings from environmental groups, who say the scale of the spill and geography of the river mean it will be difficult to clean up.

Greenpeace has compared it to the 1989 Exxon Valdez disaster in Alaska.

Oleg Mitvol, former deputy head of Russia’s environmental watchdog Rosprirodnadzor, said there had “never been such an accident in the Arctic zone”.

He said the clean-up could cost 100bn roubles (£1.2bn; $1.5bn) and take between five and 10 years.

Minister of Natural Resources Dmitry Kobylkin warned against trying to burn off such a vast quantity of fuel oil.

He proposed trying to dilute the oil with reagents. Only the emergencies ministry with military support could deal with the pollution, he said.

Barges with booms could not contain the slick because the Ambarnaya river was too shallow, he warned.

He suggested pumping the oil on to the adjacent tundra, although President Putin added: “The soil there is probably saturated [with oil] already.”

An update of the situation can be found in a July 8, 2020 Canadian Broadcasting Corporation (CBC) article (issued by Thomson Reuters),

Russia’s environmental watchdog has asked a power subsidiary of Russian mining giant Norilsk Nickel to pay almost 148 billion rubles, or $2.8 billion Cdn, in damages over an Arctic fuel spill in Siberia.

Rosprirodnadzor, the Federal Service for Supervision of Use of Natural Resources, said in a statement on Monday [July 8, 2020] that it had already sent a request for “voluntary compensation” to the subsidiary, NTEK, after calculating the damage caused by the May 29 [2020] fuel spill.

Norilsk Nickel’s Moscow-listed shares fell by 3 per cent after the watchdog’s statement.

A fuel tank at the power plant lost pressure and released 21,000 tonnes of diesel into rivers and subsoil near the city of Norilsk, 2,900 kilometres northeast of Moscow. Russian President Vladimir Putin subsequently declared a state of emergency in the region, and investigators detained three staff at the power plant.

Norilsk, a remote city of 180,000 people situated 300 kilometres inside the Arctic Circle, is built around Norilsk Nickel, the world’s leading nickel and palladium producer, and has a reputation for its pollution.

Rosprirodnadzor said the damages included the cost for nearby water bodies, estimated at 147.05 billion rubles, $2.8 billion Cdn, and for subsoil, estimated at 738.62 million roubles, $14 million Cdn.

I can’t find any August 2020 updates for the oil spill situation in Russia. (Note: There is now an oil spill in a ecologically sensitive region near Mauritius; see August 13, 2020 news item on CBC news online website.)

Exceptionally warm weather

The oil spill isn’t the only problem in the Arctic.Here’s more from a June 23, 2020 article by Matt Simon for Wired magazine (Note: A link has been removed),

On Saturday [June 20, 2020], the residents of Verkhoyansk, Russia, marked the first day of summer with 100 degree Fahrenheit temperatures. Not that they could enjoy it, really, as Verkhoyansk is in Siberia, hundreds of miles from the nearest beach. That’s much, much hotter than towns inside the Arctic Circle usually get. That 100 degrees appears to be a record, well above the average June high temperature of 68 degrees. Yet it’s likely the people of Verkhoyansk will see that record broken again in their lifetimes: The Arctic is warming twice as fast as the rest of the planet—if not faster—creating ecological chaos for the plants and animals that populate the north.

“The events over the weekend—in the last few weeks, really—with the heatwave in Siberia, all are unprecedented in terms of the magnitude of the extremes in temperature,” says Sophie Wilkinson, a wildfire scientist at McMaster University who studies northern peat fires, which themselves have grown unusually frequent in recent years as temperatures climb.

The Arctic’s extreme warming, known as Arctic amplification or polar amplification, may be due to three factors. One, the region’s reflectivity, or albedo—how much light it bounces back into space—is changing as the world warms. “What we’ve been seeing over the last 30 years is some relatively dramatic declines in sea ice in the summertime,” says University of Edinburgh global change ecologist Isla Myers-Smith, who studies the Arctic.

Since ice is white, it reflects the sun’s energy, something you’re already probably familiar with when it comes to staying cool in the summer. If you had to pick the color of T-shirt to wear when going hiking on a hot day, she says, “most of us would pick the white T-shirt, because that’s going to reflect the sun’s heat off of our back.” Similarly, Myers-Smith says, “If the sea ice melts in the Arctic, that will remove that white surface off of the ocean, and what will be exposed is this darker ocean surface that will absorb more of the sun’s heat.”

If you’re interested in the environmental consequences of the warming of the Arctic, this is a very good article.

Finishing up, I wish the clean-up crews (in Russia and near Mauritius) all the best as they work in the midst of a pandemic, as well as, an environmental disaster (both the oil spill and the warming of the Arctic).

Branched flows of light look like trees say “explorers of experimental science” at Technion

Enhancing soap bubbles for your science explorations? It sounds like an entertaining activity you might give children for ‘painless’ science education. In this case, researchers at Technion – Israel Institute of Technology have made an exciting discovery, The following video is where I got the phrase “explorers of experimental science,”

A July 1, 2020 news item on Nanowerk announces the work (Note: A link has been removed),

A team of researchers from the Technion – Israel Institute of Technology has observed branched flow of light for the very first time. The findings are published in Nature and are featured on the cover of the July 2, 2020 issue (“Observation of branched flow of light”).

The study was carried out by Ph.D. student Anatoly (Tolik) Patsyk, in collaboration with Miguel A. Bandres, who was a postdoctoral fellow at Technion when the project started and is now an Assistant Professor at CREOL, College of Optics and Photonics, University of Central Florida. The research was led by Technion President Professor Uri Sivan and Distinguished Professor Mordechai (Moti) Segev of the Technion’s Physics and Electrical Engineering Faculties, the Solid State Institute, and the Russell Berrie Nanotechnology Institute.

A July 2, 2020 Technion press release, which originated the news item, delves further into the research,

When waves travel through landscapes that contain disturbances, they naturally scatter, often in all directions. Scattering of light is a natural phenomenon, found in many places in nature. For example, the scattering of light is the reason for the blue color of the sky. As it turns out, when the length over which disturbances vary is much larger than the wavelength, the wave scatters in an unusual fashion: it forms channels (branches) of enhanced intensity that continue to divide or branch out, as the wave propagates.  This phenomenon is known as branched flow. It was first observed in 2001 in electrons and had been suggested to be ubiquitous and occur also for all waves in nature, for example – sound waves and even ocean waves. Now, Technion researchers are bringing branched flow to the domain of light: they have made an experimental observation of the branched flow of light.

“We always had the intention of finding something new, and we were eager to find it. It was not what we started looking for, but we kept looking and we found something far better,” says Asst. Prof. Miguel Bandres. “We are familiar with the fact that waves spread when they propagate in a homogeneous medium. But for other kinds of mediums, waves can behave in very different ways. When we have a disordered medium where the variations are not random but smooth, like a landscape of mountains and valleys, the waves will propagate in a peculiar way. They will form channels that keep dividing as the wave propagates, forming a beautiful pattern resembling the branches of a tree.” 

In their research, the team coupled a laser beam to a soap membrane, which contains random variations in membrane thickness. They discovered that when light propagates within the soap film, rather than being scattered, the light forms elongated branches, creating the branched flow phenomenon for light.

“In optics we usually work hard to make light stay focused and propagate as a collimated beam, but here the surprise is that the random structure of the soap film naturally caused the light to stay focused. It is another one of nature’s surprises,” says Tolik Patsyk. 

The ability to create branched flow in the field of optics offers new and exciting opportunities for investigating and understanding this universal wave phenomenon.

“There is nothing more exciting than discovering something new and this is the first demonstration of this phenomenon with light waves,” says Technion President Prof. Uri Sivan. “This goes to show that intriguing phenomena can also be observed in simple systems and one just has to be perceptive enough to uncover them. As such, bringing together and combining the views of researchers from different backgrounds and disciplines has led to some truly interesting insights.”

“The fact that we observe it with light waves opens remarkable new possibilities for research, starting with the fact that we can characterize the medium in which light propagates to very high precision and the fact that we can also follow those branches accurately and study their properties,” he adds.

Distinguished Prof. Moti Segev looks to the future. “I always educate my team to think beyond the horizon,” he says, “to think about something new, and at the same time – look at the experimental facts as they are, rather than try to adapt the experiments to meet some expected behavior. Here, Tolik was trying to measure something completely different and was surprised to see these light branches which he could not initially explain. He asked Miguel to join in the experiments, and together they upgraded the experiments considerably – to the level they could isolate the physics involved. That is when we started to understand what we see. It took more than a year until we understood that what we have is the strange phenomenon of “branched flow”, which at the time was never considered in the context of light waves. Now, with this observation – we can think of a plethora of new ideas. For example, using these light branches to control the fluidic flow in liquid, or to combine the soap with fluorescent material and cause the branches to become little lasers. Or to use the soap membranes as a platform for exploring fundamentals of waves, such as the transitions from ordinary scattering which is always diffusive, to branched flow, and subsequently to Anderson localization. There are many ways to continue this pioneering study. As we did many times in the past, we would like to boldly go where no one has gone before.” 

The project is now continuing in the laboratories of Profs. Segev and Sivan at Technion, and in parallel in the newly established lab of Prof. Miguel Bandres at UCF. 

Here’s a link to and a citation for the paper,

Observation of branched flow of light by Anatoly Patsyk, Uri Sivan, Mordechai Segev & Miguel A. Bandres Nature volume 583, pages60–65 (2020) DOI: https://doi.org/10.1038/s41586-020-2376-8 Published: 01 July 2020 Issue Date: 02 July 2020

This paper is behind a paywall.

Off-target CRISPR-Cas9 gene-editing changes closer to home than originally believed according to three studies

Heidi Ledford’s June 25, 2020 article (Note: Links have been removed) for Nature focuses on three studies (not yet peer-reviewed) that viewed together suggest CRISPR (clustered regularly interspaced short palindromic repeats) gene-editing is less like using a pair of scissors to cut out unwanted mutations and more like using a catalyst (a chemical agent which increases chemical reactions) and getting unanticipated and unwatned reactions. Except, it’s an unpredictable catalyst.

A suite of experiments that use the gene-editing tool CRISPR–Cas9 to modify human embryos have revealed how the process can make large, unwanted changes to the genome at or near the target site. [emphasis mine]

The studies were published this month on the preprint server bioRxiv, and have not yet been peer-reviewed1,2,3. But taken together, they give scientists a good look at what some say is an underappreciated risk of CRISPR–Cas9 editing. Previous experiments have revealed that the tool can make ‘off target’ gene mutations far from the target site, but the nearby changes identified in the latest studies can be missed by standard assessment methods.

These safety concerns are likely to inform the ongoing debate over whether scientists should edit human embryos to prevent genetic diseases — a process that is controversial because it creates a permanent change to the genome that can be passed down for generations. “If human embryo editing for reproductive purposes or germline editing were space flight, the new data are the equivalent of having the rocket explode at the launch pad before take-off,” says Fyodor Urnov, who studies genome editing at the University of California, Berkeley, but was not involved in any of the latest research.

These studies,if borne out, offer new concerns (from Ledford’s June 25, 2020 article),

The changes are the result of DNA-repair processes harnessed by genome-editing tools. CRISPR–Cas9 uses a small strand of RNA to direct the Cas9 enzyme to a site in the genome with a similar sequence. The enzyme then cuts both strands of DNA at that site, and the cell’s repair systems heal the gap.

The edits occur during that repair: most often, the cell seals up the cut using an error-prone mechanism that can insert or delete a small number of DNA letters. If researchers provide a DNA template, the cell might sometimes use that sequence to mend the cut, resulting in a true rewrite. But broken DNA can also cause shuffling or loss of a large region of the chromosome.

Previous work using CRISPR in mouse embryos and other kinds of human cell had already demonstrated that editing chromosomes can cause large, unwanted effects4,5. But it was important to demonstrate the work in human embryos as well, says Urnov, because different cell types might respond to genome editing differently.

Such rearrangements could be missed in many experiments, which typically look for other unwanted edits, such as single DNA-letter changes or small insertions or deletions of only a few letters. The latest studies, however, looked specifically for large deletions and chromosomal rearrangements near the target site. [emphasis mine] “This is something that all of us in the scientific community will, starting immediately, take more seriously than we already have,” says Urnov. “This is not a one-time fluke.”

Ledford’s article offers some description and analysis of each of the three papers.Note: All of the research was done with nonviable embryos. For anyone who wants to read the papers for themselves here are links and citations for each of the three,

Frequent loss-of-heterozygosity in CRISPR-Cas9-edited early human embryos by Gregorio Alanis-Lobato, Jasmin Zohren, Afshan McCarthy, Norah M.E. Fogarty, Nada Kubikova, Emily Hardman, Maria Greco, Dagan Wells, James M.A. Turner, Kathy K. Niakan. bioRxiv DOI: https://doi.org/10.1101/2020.06.05.135913 Posted: June 5, 2020

Reading frame restoration at the EYS locus, and allele-specific chromosome removal after Cas9 cleavage in human embryos by Michael V. Zuccaro, Jia Xu, Carl Mitchell, Diego Marin, Raymond Zimmerman, Bhavini Rana, Everett Weinstein, Rebeca T. King, Morgan Smith, Stephen H. Tsang, Robin Goland, Maria Jasin, Rogerio Lobo, Nathan Treff, Dieter Egli. bioRxiv DOI: https://doi.org/10.1101/2020.06.17.149237 Posted June 18, 2020

FREQUENT GENE CONVERSION IN HUMAN EMBRYOS INDUCED BY DOUBLE STRAND BREAKS by Dan Liang, Nuria Marti Gutierrez, Tailai Chen, Yeonmi Lee, Sang-Wook Park, Hong Ma, Amy Koski, Riffat Ahmed, Hayley Darby, Ying Li, Crystal Van Dyken, Aleksei Mikhalchenko, Thanasup Gonmanee, Tomonari Hayama, Han Zhao, Keliang Wu, Jingye Zhang, Zhenzhen Hou, Jumi Park, Chong-Jai Kim, Jianhui Gong, Yilin Yuan, Ying Gu, Yue Shen, Susan B. Olson, Hui Yang, David Battaglia, Thomas O’Leary, Sacha A. Krieg, David M. Lee, Diana H. Wu, P. Barton Duell, Sanjiv Kaul, Jin-Soo Kim, Stephen B. Heitner, Eunju Kang, Zi-Jiang Chen, Paula Amato, Shoukhrat Mitalipov. bioRxiv DOI: https://doi.org/10.1101/2020.06.19.162214 Posted June 20, 2020

These papers are open access.

A July 17, 2018 posting is probably the first time I featured work showing that CRISPR gene-editing can result in off-target effects; it was followed up by a September 20, 2019 posting on the topic.

Keep your building cool with super paint

As temperatures rise and the Arctic melts, scientists are searching for ways to keep us and our buildings cool without adding unduly to our current problems. A July 8, 2020 University of California at Los Angeles news release (also on EurekAlert) announces a new paint,

A research team led by UCLA materials scientists has demonstrated ways to make super white paint that reflects as much as 98% of incoming heat from the sun. The advance shows practical pathways for designing paints that, if used on rooftops and other parts of a building, could significantly reduce cooling costs, beyond what standard white ‘cool-roof’ paints can achieve.

The findings, published online in Joule, are a major and practical step towards keeping buildings cooler by passive daytime radiative cooling — a spontaneous process in which a surface reflects sunlight and radiates heat into space, cooling down to potentially sub-ambient temperatures. This can lower indoor temperatures and help cut down on air conditioner use and associated carbon dioxide emissions.

“When you wear a white T-shirt on a hot sunny day, you feel cooler than if you wore one that’s darker in color — that’s because the white shirt reflects more sunlight and it’s the same concept for buildings,” said Aaswath Raman, an assistant professor of materials science and engineering at UCLA Samueli School of Engineering, and the principal investigator on the study. “A roof painted white will be cooler inside than one in a darker shade. But those paints also do something else: they reject heat at infrared wavelengths, which we humans cannot see with our eyes. This could allow buildings to cool down even more by radiative cooling.”

The best performing white paints currently available typically reflect around 85% of incoming solar radiation. The remainder is absorbed by the chemical makeup of the paint. The researchers showed that simple modifications in a paint’s ingredients could offer a significant jump, reflecting as much as 98% of incoming radiation.

Current white paints with high solar reflectance use titanium oxide. While the compound is very reflective of most visible and near-infrared light, it also absorbs ultraviolet and violet light. The compound’s UV absorption qualities make it useful in sunscreen lotions, but they also lead to heating under sunlight – which gets in the way of keeping a building as cool as possible.

The researchers examined replacing titanium oxide with inexpensive and readily available ingredients such as barite, which is an artist’s pigment, and pow[d]ered polytetrafluoroethylene, better known as Teflon. These ingredients help paints reflect UV light. The team also made further refinements to the paint’s formula, including reducing the concentration of polymer binders, which also absorb heat.

“The potential cooling benefits this can yield may be realized in the near future because the modifications we propose are within the capabilities of the paint and coatings industry,” said UCLA postdoctoral scholar Jyotirmoy Mandal, a Schmidt Science Fellow working in Raman’s research group and the co-corresponding author on the research.

Beyond the advance, the authors suggested several long-term implications for further study, including mapping where such paints could make a difference, studying the effect of pollution on radiative cooling technologies, and on a global scale, if they could make a dent on the earth’s own ability to reflect heat from the sun.

The researchers also noted that many municipalities and governments, including the state of California and New York City, have started to encourage cool-roof technologies for new buildings.

“We hope that the work will spur future initiatives in super-white coatings for not only energy savings in buildings, but also mitigating the heat island effects of cities, and perhaps even showing a practical way that, if applied on a massive, global scale could affect climate change,” said Mandal, who has studied cooling paint technologies for several years. “This would require a collaboration among experts in diverse fields like optics, materials science and meteorology, and experts from the industry and policy sectors.”

Here’s a link (also in the news release) to and a citation for the paper,

Paints as a Scalable and Effective Radiative Cooling Technology for Buildings by Jyotirmoy Mandal, Yuan Yang, Nanfang Yu, Aaswath P. Raman. Joule DOI: https://doi.org/10.1016/j.joule.2020.04.010 Published: May 29, 2020

This paper is behind a paywall.

Live music by teleportation? Catch up. It’s already happened.

Dr. Alexis Kirke first graced this blog about four years ago, in a July 8, 2016 posting titled, Cornwall (UK) connects with University of Southern California for performance by a quantum computer (D-Wave) and mezzo soprano Juliette Pochin.

Kirke now returns with a study showing how teleportation helped to create a live performance piece, from a July 2, 2020 news item on ScienceDaily,

Teleportation is most commonly the stuff of science fiction and, for many, would conjure up the immortal phrase “Beam me up, Scotty.”

However, a new study has described how its status in science fact could actually be employed as another, and perhaps unlikely, form of entertainment — live music.

Dr Alexis Kirke, Senior Research Fellow in the Interdisciplinary Centre for Computer Music Research at the University of Plymouth (UK), has for the first time shown that a human musician can communicate directly with a quantum computer via teleportation.

The result is a high-tech jamming session, through which a blend of live human and computer-generated sounds come together to create a unique performance piece.

A July 2, 2020 Plymouth University press release (also on EurekAlert), which originated the news item, offers more detail about this latest work along with some information about the 2016 performance and how it all provides insight into how quantum computing might function in the future,

Speaking about the study, published in the current issue of the Journal of New Music Research, Dr Kirke said: “The world is racing to build the first practical and powerful quantum computers, and whoever succeeds first will have a scientific and military advantage because of the extreme computing power of these machines. This research shows for the first time that this much-vaunted advantage can also be helpful in the world of making and performing music. No other work has shown this previously in the arts, and it demonstrates that quantum power is something everyone can appreciate and enjoy.”

Quantum teleportation is the ability to instantaneously transmit quantum information over vast distances, with scientists having previously used it to send information from Earth to an orbiting satellite over 870 miles away.

In the current study, Dr Kirke describes how he used a system called MIq (Multi-Agent Interactive qgMuse), in which an IBM quantum computer executes a methodology called Grover’s Algorithm.

Discovered by Lov Grover at Bell Labs in 1996, it was the second main quantum algorithm (after Shor’s algorithm) and gave a huge advantage over traditional computing.

In this instance, it allows the dynamic solving of musical logical rules which, for example, could prevent dissonance or keep to ¾ instead of common time.

It is significantly faster than any classical computer algorithm, and Dr Kirke said that speed was essential because there is actually no way to transmit quantum information other than through teleportation.

The result was that when played the theme from Game of Thrones on the piano, the computer – a 14-qubit machine housed at IBM in Melbourne – rapidly generated accompanying music that was transmitted back in response.

Dr Kirke, who in 2016 staged the first ever duet between a live singer and a quantum supercomputer, said: “At the moment there are limits to how complex a real-time computer jamming system can be. The number of musical rules that a human improviser knows intuitively would simply take a computer too long to solve to real-time music. Shortcuts have been invented to speed up this process in rule-based AI music, but using the quantum computer speed-up has not be tried before. So while teleportation cannot move information faster than the speed of light, if remote collaborators want to connect up their quantum computers – which they are using to increase the speed of their musical AIs – it is 100% necessary. Quantum information simply cannot be transmitted using normal digital transmission systems.”

Caption: Dr Alexis Kirke (right) and soprano Juliette Pochin during the first duet between a live singer and a quantum supercomputer. Credit: University of Plymouth

Here’s a link to and a citation for the latest research,

Testing a hybrid hardware quantum multi-agent system architecture that utilizes the quantum speed advantage for interactive computer music by Alexis Kirke. Journal of New Music Research Volume 49, 2020 – Issue 3 Pages 209-230 DOI: https://doi.org/10.1080/09298215.2020.1749672 Published online: 13 Apr 2020

This paper appears to be open access.

News from the Canadian Light Source (CLS), Canadian Science Policy Conference (CSPC) 2020, the International Symposium on Electronic Arts (ISEA) 2020, and HotPopRobot

I have some news about conserving art; early bird registration deadlines for two events, and, finally, an announcement about contest winners.

Canadian Light Source (CLS) and modern art

Rita Letendre. Victoire [Victory], 1961. Oil on canvas, Overall: 202.6 × 268 cm. Art Gallery of Ontario. Gift of Jessie and Percy Waxer, 1974, donated by the Ontario Heritage Foundation, 1988. © Rita Letendre L74.8. Photography by Ian Lefebvre

This is one of three pieces by Rita Letendre that underwent chemical mapping according to an August 5, 2020 CLS news release by Victoria Martinez (also received via email),

Research undertaken at the Canadian Light Source (CLS) at the University of Saskatchewan was key to understanding how to conserve experimental oil paintings by Rita Letendre, one of Canada’s most respected living abstract artists.

The work done at the CLS was part of a collaborative research project between the Art Gallery of Ontario (AGO) and the Canadian Conservation Institute (CCI) that came out of a recent retrospective Rita Letendre: Fire & Light at the AGO. During close examination, Meaghan Monaghan, paintings conservator from the Michael and Sonja Koerner Centre for Conservation, observed that several of Letendre’s oil paintings from the fifties and sixties had suffered significant degradation, most prominently, uneven gloss and patchiness, snowy crystalline structures coating the surface known as efflorescence, and cracking and lifting of the paint in several areas.

Kate Helwig, Senior Conservation Scientist at the Canadian Conservation Institute, says these problems are typical of mid-20th century oil paintings. “We focused on three of Rita Letendre’s paintings in the AGO collection, which made for a really nice case study of her work and also fits into the larger question of why oil paintings from that period tend to have degradation issues.”

Growing evidence indicates that paintings from this period have experienced these problems due to the combination of the experimental techniques many artists employed and the additives paint manufacturers had begun to use.

In order to determine more precisely how these factors affected Letendre’s paintings, the research team members applied a variety of analytical techniques, using microscopic samples taken from key points in the works.

“The work done at the CLS was particularly important because it allowed us to map the distribution of materials throughout a paint layer such as an impasto stroke,” Helwig said. The team used Mid-IR chemical mapping at the facility, which provides a map of different molecules in a small sample.

For example, chemical mapping at the CLS allowed the team to understand the distribution of the paint additive aluminum stearate throughout the paint layers of the painting Méduse. This painting showed areas of soft, incompletely dried paint, likely due to the high concentration and incomplete mixing of this additive. 

The painting Victoire had a crumbling base paint layer in some areas and cracking and efflorescence at the surface in others.  Infrared mapping at the CLS allowed the team to determine that excess free fatty acids in the paint were linked to both problems; where the fatty acids were found at the base they formed zing “soaps” which led to crumbling and cracking, and where they had moved to the surface they had crystallized, causing the snowflake-like efflorescence.

AGO curators and conservators interviewed Letendre to determine what was important to her in preserving and conserving her works, and she highlighted how important an even gloss across the surface was to her artworks, and the philosophical importance of the colour black in her paintings. These priorities guided conservation efforts, while the insights gained through scientific research will help maintain the works in the long term.

In order to restore the black paint to its intended even finish for display, conservator Meaghan Monaghan removed the white crystallization from the surface of Victoire, but it is possible that it could begin to recur. Understanding the processes that lead to this degradation will be an important tool to keep Letendre’s works in good condition.

“The world of modern paint research is complicated; each painting is unique, which is why it’s important to combine theoretical work on model paint systems with this kind of case study on actual works of art” said Helwig. The team hopes to collaborate on studying a larger cross section of Letendre’s paintings in oil and acrylic in the future to add to the body of knowledge.

Here’s a link to and a citation for the paper,

Rita Letendre’s Oil Paintings from the 1960s: The Effect of Artist’s Materials on Degradation Phenomena by Kate Helwig, Meaghan Monaghan, Jennifer Poulin, Eric J. Henderson & Maeve Moriarty. Studies in Conservation (2020): 1-15 DOI: https://doi.org/10.1080/00393630.2020.1773055 Published online: 06 Jun 2020

This paper is behind a paywall.

Canadian Science Policy Conference (CSPC) 2020

The latest news from the CSPC 2020 (November 16 – 20 with preconference events from Nov. 1 -14) organizers is that registration is open and early birds have a deadline of September 27, 2020 (from an August 6, 2020 CSPC 2020 announcement received via email),

It’s time! Registration for the 12th Canadian Science Policy Conference (CSPC 2020) is open now. Early Bird registration is valid until Sept. 27th [2020].

CSPC 2020 is coming to your offices and homes:

Register for full access to 3 weeks of programming of the biggest science and innovation policy forum of 2020 under the overarching theme: New Decade, New Realities: Hindsight, Insight, Foresight.

2500+ Participants

300+ Speakers from five continents

65+ Panel sessions, 15 pre conference sessions and symposiums

50+ On demand videos and interviews with the most prominent figures of science and innovation policy 

20+ Partner-hosted functions

15+ Networking sessions

15 Open mic sessions to discuss specific topics

The virtual conference features an exclusive array of offerings:

3D Lounge and Exhibit area

Advance access to the Science Policy Magazine, featuring insightful reflections from the frontier of science and policy innovation

Many more

Don’t miss this unique opportunity to engage in the most important discussions of science and innovation policy with insights from around the globe, just from your office, home desk, or your mobile phone.

Benefit from significantly reduced registration fees for an online conference with an option for discount for multiple ticket purchases

Register now to benefit from the Early Bird rate!

The preliminary programme can be found here. This year there will be some discussion of a Canadian synthetic biology roadmap, presentations on various Indigenous concerns (mostly health), a climate challenge presentation focusing on Mexico and social vulnerability and another on parallels between climate challenges and COVID-19. There are many presentations focused on COVID-19 and.or health.

There doesn’t seem to be much focus on cyber security and, given that we just lost two ice caps (see Brandon Spektor’s August 1, 2020 article [Two Canadian ice caps have completely vanished from the Arctic, NASA imagery shows] on the Live Science website), it’s surprising that there are no presentations concerning the Arctic.

International Symposium on Electronic Arts (ISEA) 2020

According to my latest information, the early bird rate for ISEA 2020 (Oct. 13 -18) ends on August 13, 2020. (My June 22, 2020 posting describes their plans for the online event.)

You can find registration information here.

Margaux Davoine has written up a teaser for the 2020 edition of ISEA in the form of an August 6, 2020 interview with Yan Breuleux. I’ve excerpted one bit,

Finally, thinking about this year’s theme [Why Sentience?], there might be something a bit ironic about exploring the notion of sentience (historically reserved for biological life, and quite a small subsection of it) through digital media and electronic arts. There’s been much work done in the past 25 years to loosen the boundaries between such distinctions: how do you imagine ISEA2020 helping in that?

The similarities shared between humans, animals, and machines are fundamental in cybernetic sciences. According to the founder of cybernetics Norbert Wiener, the main tenets of the information paradigm – the notion of feedback – can be applied to humans, animals as well as the material world. Famously, the AA predictor (as analysed by Peter Galison in 1994) can be read as a first attempt at human-machine fusion (otherwise known as a cyborg).

The infamous Turing test also tends to blur the lines between humans and machines, between language and informational systems. Second-order cybernetics are often associated with biologists Francisco Varela and Humberto Maturana. The very notion of autopoiesis (a system capable of maintaining a certain level of stability in an unstable environment) relates back to the concept of homeostasis formulated by Willam Ross [William Ross Ashby] in 1952. Moreover, the concept of “ecosystems” emanates directly from the field of second-order cybernetics, providing researchers with a clearer picture of the interdependencies between living and non-living organisms. In light of these theories, the absence of boundaries between animals, humans, and machines constitutes the foundation of the technosciences paradigm. New media, technological arts, virtual arts, etc., partake in the dialogue between humans and machines, and thus contribute to the prolongation of this paradigm. Frank Popper nearly called his book “Techno Art” instead of “Virtual Art”, in reference to technosciences (his editor suggested the name change). For artists in the technological arts community, Jakob von Uexkull’s notion of “human-animal milieu” is an essential reference. Also present in Simondon’s reflections on human environments (both natural and artificial), the notion of “milieu” is quite important in the discourses about art and the environment. Concordia University’s artistic community chose the concept of “milieu” as the rallying point of its research laboratories.

ISEA2020’s theme resonates particularly well with the recent eruption of processing and artificial intelligence technologies. For me, Sentience is a purely human and animal idea: machines can only simulate our ways of thinking and feeling. Partly in an effort to explore the illusion of sentience in computers, Louis-Philippe Rondeau, Benoît Melançon and I have established the Mimesis laboratory at NAD University. Processing and AI technologies are especially useful in the creation of “digital doubles”, “Vactors”, real-time avatar generation, Deep Fakes and new forms of personalised interactions.

I adhere to the epistemological position that the living world is immeasurable. Through their ability to simulate, machines can merely reduce complex logics to a point of understandability. The utopian notion of empathetic computers is an idea mostly explored by popular science-fiction movies. Nonetheless, research into computer sentience allows us to devise possible applications, explore notions of embodiment and agency, and thereby develop new forms of interaction. Beyond my own point of view, the idea that machines can somehow feel emotions gives artists and researchers the opportunity to experiment with certain findings from the fields of the cognitive sciences, computer sciences and interactive design. For example, in 2002 I was particularly marked by an immersive installation at Universal Exhibition in Neuchatel, Switzerland titled Ada: Intelligence Space. The installation comprised an artificial environment controlled by a computer, which interacted with the audience on the basis of artificial emotion. The system encouraged visitors to participate by intelligently analysing their movements and sounds. Another example, Louis-Philippe Demers’ Blind Robot (2012),  demonstrates how artists can be both critical of, and amazed by, these new forms of knowledge. Additionally, the 2016 BIAN (Biennale internationale d’art numérique), organized by ELEKTRA (Alain Thibault) explored the various ways these concepts were appropriated in installation and interactive art. The way I see it, current works of digital art operate as boundary objects. The varied usages and interpretations of a particular work of art allow it to be analyzed from nearly every angle or field of study. Thus, philosophers can ask themselves: how does a computer come to understand what being human really is?

I have yet to attend conferences or exchange with researchers on that subject. Although the sheer number of presentation propositions sent to ISEA2020, I have no doubt that the symposium will be the ideal context to reflect on the concept of Sentience and many issues raised therein.

For the last bit of news.

HotPopRobot, one of six global winners of 2020 NASA SpaceApps COVID-19 challenge

I last wrote about HotPopRobot’s (Artash and Arushi with a little support from their parents) response to the 2020 NASA (US National Aeronautics and Space Administration) SpaceApps challenge in my July 1, 2020 post, Toronto COVID-19 Lockdown Musical: a data sonification project from HotPopRobot. (You’ll find a video of the project embedded in the post.)

Here’s more news from HotPopRobot’s August 4, 2020 posting (Note: Links have been removed),

Artash (14 years) and Arushi (10 years). Toronto.

We are excited to become the global winners of the 2020 NASA SpaceApps COVID-19 Challenge from among 2,000 teams from 150 countries. The six Global Winners will be invited to visit a NASA Rocket Launch site to view a spacecraft launch along with the SpaceApps Organizing team once travel is deemed safe. They will also receive an invitation to present their projects to NASA, ESA [European Space Agency], JAXA [Japan Aerospace Exploration Agency], CNES [Centre National D’Etudes Spatiales; France], and CSA [Canadian Space Agency] personnel. https://covid19.spaceappschallenge.org/awards

15,000 participants joined together to submit over 1400 projects for the COVID-19 Global Challenge that was held on 30-31 May 2020. 40 teams made to the Global Finalists. Amongst them, 6 teams became the global winners!

The 2020 SpaceApps was an international collaboration between NASA, Canadian Space Agency, ESA, JAXA, CSA,[sic] and CNES focused on solving global challenges. During a period of 48 hours, participants from around the world were required to create virtual teams and solve any of the 12 challenges related to the COVID-19 pandemic posted on the SpaceApps website. More details about the 2020 SpaceApps COVID-19 Challenge:  https://sa-2019.s3.amazonaws.com/media/documents/Space_Apps_FAQ_COVID_.pdf

We have been participating in NASA Space Challenge for the last seven years since 2014. We were only 8 years and 5 years respectively when we participated in our very first SpaceApps 2014.

We have grown up learning more about space, tacking global challenges, making hardware and software projects, participating in meetings, networking with mentors and teams across the globe, and giving presentations through the annual NASA Space Apps Challenges. This is one challenge we look forward to every year.

It has been a fun and exciting journey meeting so many people and astronauts and visiting several fascinating places on the way! We hope more kids, youths, and families are inspired by our space journey. Space is for all and is yours to discover!

If you have the time, I recommend reading HotPopRobot’s August 4, 2020 posting in its entirety.

Effective treatment for citrus-destroying disease?

Citrus greening is a worldwide problem. A particularly virulent disease that destroys citrus fruit, it’s a problem that is worsening. Before getting to the research from the University of California at Riverside (UCR), here’s more about the disease and how it’s developing from the UCR Huanglongbing, (HLB, Citrus Greening webpage,

The Situation: Citrus huanglongbing (HLB), previously called citrus greening disease, is one of the most destructive diseases of citrus worldwide.  Originally thought to be caused by a virus, it is now known to be caused by unculturable phloem-limited bacteria.  There are three forms of greening that have been described.  The African form produces symptoms only under cool conditions and is transmitted by the African citrus psyllid Trioza erytreae, while the Asian form prefers warmer conditions and is transmitted by the Asian citrus psyllid Diaphorina citri.  Recently a third American form transmitted by the Asian citrus psyllid was discovered in Brazil.  This American form of the disease apparently originated in China.  In North America, the psyllid vector, Diaphorina citri, of HLB is found in Florida, Louisiana, Georgia, South Carolina, Texas and Hawaii, and recently arrived in Southern California from Mexico. HLB is known to occur in Florida Lousiana, South Carolina, Georgia, Cuba, Belize and the Eastern Yucatan of Mexico.  A federal quarantine restricts all movement of citrus and other plants in the family Rutaceae from Asian Citrus Psyllid or HLB-infested areas into California in order to prevent introduction of the disease.

 Damage:  The HLB bacteria can infect most citrus cultivars, species and hybrids and even some citrus relatives.  Leaves of newly infected trees develop a blotchy mottle appearance.  On chronically infected trees, the leaves are small and exhibit asymmetrical blotchy mottling (in contrast to Zinc deficiency that causes symmetrical blotching).  Fruit from HLB-infected trees are small, lopsided, poorly colored, and contain aborted seeds. The juice from affected fruit is low in soluble solids, high in acids and abnormally bitter.  The fruit retains its green color at the navel end when mature, which is the reason for the common name “citrus greening disease.”  This fruit is of no value because of poor size and quality.  There is no cure for the disease and rapid tree removal is critical for prevention of spread.

Economic Impact: HLB is one of the most devastating diseases of citrus and since its discovery in Florida in 2005, citrus acreage in that state has declined significantly.  If the disease were to establish in California, the nursery industry would be required to move all of their production under screenhouses, pesticide treatments for the vector would be instituted resulting in greatly increased pesticide costs (3-6 treatments per year) and indirect costs due to pesticide-induced disruption of integrated pest management programs for other citrus pests.  A costly eradication program would need to be instituted to remove infected trees in order to protect the citrus industry.

Distribution of HLB: In April 2012, after about a week of testing, the California Department of Food and Agriculture (CDFA) removed a pumelo tree with a lemon graft from Hacienda Heights in Los Angeles County after the tree and an Asian citrus psyllid found on the tree both tested positive for Huanglongbing. In 2005, HLB was also found in Florida and it is now known to occur in Louisiana, Georgia, South Carolina, Cuba, Belze and Eastern Mexico.  Worldwide, HLB is also present in China, eastern and southern Africa, the Indian subcontinent, Mauritius, Reunion, the Saudi Arabian peninsula, and southeast Asia.

Research:  Research is focusing on characterization of the bacteria, development of detection methods, and control of the disease and the psyllid.  To date, control of the disease is based on planting HLB-free citrus germplasm, eradication of infected citrus plants, and control of the vector with systemic insecticides.  Countries with HLB learn to manage the disease so that they can still produce citrus.  In California, the best strategy is to keep this disease out. This goal is supported by both federal and state quarantine regulations and the University of California’s Citrus Clonal Protection Program, which provides a mechanism for the safe introduction of citrus germplasm into California.

A July 7, 2020 news item on phys.org announces what researchers hope can be used commercially as a new treatment for citrus greening disease from researchers University of California at Riverside (UCR), Note: Links have been removed,

UC Riverside scientists have found the first substance capable of controlling Citrus Greening Disease, which has devastated citrus farms in Florida and also threatens California.

The new treatment effectively kills the bacterium causing the disease with a naturally occurring molecule found in wild citrus relatives. This molecule, an antimicrobial peptide, offers numerous advantages over the antibiotics currently used to treat the disease.

UCR geneticist Hailing Jin, who discovered the cure after a five-year search, explained that unlike antibiotic sprays, the peptide is stable even when used outdoors in high heat, easy to manufacture, and safe for humans.

A July 7, 2020 UCR news release (also on EurekAlert) by Jules Bernstein, which originated the news item, provides technical detail and information about plans to commercialize the product,

“This peptide is found in the fruit of Australian finger limes, which can naturally tolerate Citrus Greening bacteria and has been consumed for hundreds of years,” Jin said. “It is much safer to use this natural plant product on agricultural crops than other synthetic chemicals.”

Currently, some growers in Florida are spraying antibiotics and pesticides in an attempt to save trees from the CLas bacterium that causes citrus greening, also known as Huanglongbing or HLB.

“Most antibiotics are temperature sensitive, so their effects are largely reduced when applied in the hot weather,” Jin said. “By contrast, this peptide is stable even when used in 130-degree heat.”

Jin found the peptide by examining plants such as the Australian finger lime known to possess natural tolerance for the bacteria that causes Citrus Greening Disease, and she isolated the genes that contribute to this innate immunity. One of these genes produces the peptide, which she then tested over the course of two years. Improvement was soon visible.

“You can see the bacteria drastically reduced, and the leaves appear healthy again only a few months after treatment,” Jin said.

Because the peptide only needs to be reapplied a few times per year, it is highly cost effective for growers. This peptide can also be developed into a vaccine to protect young healthy plants from infection, as it is able to induce the plant’s innate immunity to the bacteria.

Jin’s peptide can be applied by injection or foliage spray, and it moves systemically through plants and remains stable, which makes the effect of the treatment stronger.

The treatment will be further enhanced with proprietary injection technology made by Invaio Sciences. UC Riverside has entered into an exclusive, worldwide license agreement with Invaio, ensuring this new treatment goes exactly where it’s needed in plants.

“Invaio is enthusiastic to partner with UC Riverside and advance this innovative technology for combating the disease known as Citrus Greening or Huanglongbing,” said Invaio Chief Science Officer Gerardo Ramos. “The prospect of addressing this previously incurable and devastating crop disease, helping agricultural communities and improving the environmental impact of production is exciting and rewarding,” he said. “This is crop protection in harmony with nature.”

The need for an HLB cure is a global problem, but hits especially close to home as California produces 80 percent of all the fresh citrus in the United States, said Brian Suh, director of technology commercialization in UCR’s Office of Technology Partnerships, which helps bring university technology to market for the benefit of society through licenses, partnerships, and startup companies.

“This license to Invaio opens up the opportunity for a product to get to market faster,” Suh said. “Cutting edge research from UCR, like the peptide identified by Dr. Jin, has a tremendous amount of commercial potential and can transform the trajectory of real-world problems with these innovative solutions.”

You can find out more about Invaio Sciences here.

Citrus greening has been featured here before in an April 7, 2015 posting titled, Citrus canker, Florida, and Zinkicide. There doesn’t seem to have been much progress made with this Florida solution for citrus greening. This 2018 document on nano.gov was the most recent I could find, ZinkicideTM- a systemic nano-ZnO based bactericide/fungicide for crop protection by Swadeshmukul Santra.

Metallic nanoparticles inside heart tissue mitochondria can cause damage

With all the focus on COVID-19, viruses , and aerosols, it’s easy to forget that there are other kinds of contaminated air too. The last time I featured work on nanoparticles and air pollution was in a May 31, 2017 posting, “Explaining the link between air pollution and heart disease?” where scientists announced they may have discovered how air pollution (nanoparticles) were making their way from lungs to the heart. Answer: the bloodstream.

A July 3, 2020 Lancaster University press release (also on EurekAlert) announces research into how air made toxic by metallic nanoparticles affects the heart in very specific ways (Note: A link has been removed),

Toxic metallic air pollution nanoparticles are getting inside the crucial, energy-producing structures within the hearts of people living in polluted cities, causing cardiac stress – a new study confirms.

The research team, led by Professors Barbara Maher of Lancaster University and Lilian Calderón-Garcidueñas of The University of Montana and the Universidad del Valle de Mexico, found the metallic nanoparticles, which included iron-rich nanoparticles and other pollution-derived metals such as titanium, inside the damaged heart cells of a 26-year-old and even a three-year-old toddler.

The hearts had belonged to people who had died in accidents and who had lived in highly-polluted Mexico City.

The findings shed new light on how air pollution can cause the development of heart disease, as the iron-rich particles were associated with damage to the cells, and increased cardiac oxidative stress, even in these very young hearts.

The repeated inhalation of these iron-rich nanoparticles, and their circulation by the bloodstream to the heart, may account for the well-established associations between exposure to particulate air pollution and increased cardiovascular disease, including heart attacks. The study indicates that heart disease can start in very early age, before progressing to full-blown cardiovascular illness later in life. This type of air pollution may thus be responsible for the ‘silent epidemic’ of heart disease, internationally. By causing pre-existing heart conditions, it may also account for some of the increased death rates from Covid-19 seen in areas with high levels of particulate air pollution.

Professor Maher said: “It’s been known for a long time that people with high exposure to particulate air pollution experience increased levels and severity of heart disease. Our new work shows that iron-rich nanoparticles from air pollution can get right inside the millions of mitochondria inside our hearts…the structures which generate the energy needed for our hearts to pump properly.

“That we found these metal particles inside the heart of even a three-year old indicates that we’re setting heart disease in train right from the earliest days, but only seeing its full, clinical effects in later life. It’s really urgent to reduce emissions of ultrafine particles from our vehicles and from industry, before we give heart disease to the next generation too.”

The researchers, using high-resolution transmission electron microscopy and energy-dispersive X-ray analysis, found that the mitochondria containing the iron-rich nanoparticles appeared to be damaged, with some cells showing deformities and others with ruptured membranes. Professor Calderón-Garcidueñas stated that increased levels of markers of cardiac oxidative stress are present in the very young cases examined.

The iron-rich nanoparticles found inside the heart cells are identical in size, shape and composition to those emitted from sources such as the exhausts, tyres and brakes of vehicles. These air pollution nanoparticles are also emitted by industrial sources as well as open fires in homes.

Some of the iron-rich nanoparticles are also strongly magnetic. This raises concerns about what might happen when people with millions of these nanoparticles in their hearts are using appliances with associated magnetic fields, such as hair dryers and mobile phones. People who work in industries that mean they are exposed to magnetic fields such as welders and power line engineers may also be at risk. This kind of exposure could potentially lead to heart electrical dysfunction and cell damage.

The findings builds on the researchers’ previous findings that show that the hearts of city dwellers contain billions of these nanoparticles and can be up to ten times more polluted than the hearts of people living in less polluted places.

The researchers say their study underlines the need for governments across the world to tackle ultrafine particulate pollution in their cities.

Professor Calderón-Garcidueñas said: “Exposure to such air pollution is a modifiable risk factor for cardiovascular disease, on a global scale, reinforcing the urgent need for individual and government actions not just to reduce PM2.5 but to monitor, regulate and reduce emissions of these specific, ultrafine components of the urban air pollution ‘cocktail’.”

Here’s a link to and a citation for the paper,

Iron-rich air pollution nanoparticles: An unrecognised environmental risk factor for myocardial mitochondrial dysfunction and cardiac oxidative stress by B.A.Maher, A.González-Maciel, R.Reynoso-Robles, R.Torres-Jardón, L.Calderón-Garcidueñas. Environmental Research Volume 188, September 2020, 109816 DOI: https://doi.org/10.1016/j.envres.2020.109816 Available online 21 June 2020

This paper appears to be open access (just keep scrolling down).

Suit up with nanofiber for protection against explosions and high temperatures

Where explosions are concerned you might expect to see some army research and you would be right. A June 29, 2020 news item on ScienceDaily breaks the news,

Since World War I, the vast majority of American combat casualties has come not from gunshot wounds but from explosions. Today, most soldiers wear a heavy, bullet-proof vest to protect their torso but much of their body remains exposed to the indiscriminate aim of explosive fragments and shrapnel.

Designing equipment to protect extremities against the extreme temperatures and deadly projectiles that accompany an explosion has been difficult because of a fundamental property of materials. Materials that are strong enough to protect against ballistic threats can’t protect against extreme temperatures and vice versa. As a result, much of today’s protective equipment is composed of multiple layers of different materials, leading to bulky, heavy gear that, if worn on the arms and legs, would severely limit a soldier’s mobility.

Now, Harvard University researchers, in collaboration with the U.S. Army Combat Capabilities Development Command Soldier Center (CCDC SC) and West Point, have developed a lightweight, multifunctional nanofiber material that can protect wearers from both extreme temperatures and ballistic threats.

A June 29, 2020 Harvard University news release (also on EurekAlert) by Leah Burrows, which originated the news item, expands on the theme,

“When I was in combat in Afghanistan, I saw firsthand how body armor could save lives,” said senior author Kit Parker, the Tarr Family Professor of Bioengineering and Applied Physics at the Harvard John A. Paulson School of Engineering and Applied Sciences (SEAS) and a lieutenant colonel in the United States Army Reserve. “I also saw how heavy body armor could limit mobility. As soldiers on the battlefield, the three primary tasks are to move, shoot, and communicate. If you limit one of those, you decrease survivability and you endanger mission success.”

“Our goal was to design a multifunctional material that could protect someone working in an extreme environment, such as an astronaut, firefighter or soldier, from the many different threats they face,” said Grant M. Gonzalez, a postdoctoral fellow at SEAS and first author of the paper.

In order to achieve this practical goal, the researchers needed to explore the tradeoff between mechanical protection and thermal insulation, properties rooted in a material’s molecular structure and orientation.

Materials with strong mechanical protection, such as metals and ceramics, have a highly ordered and aligned molecular structure. This structure allows them to withstand and distribute the energy of a direct blow. Insulating materials, on the other hand, have a much less ordered structure, which prevents the transmission of heat through the material.

Kevlar and Twaron are commercial products used extensively in protective equipment and can provide either ballistic or thermal protection, depending on how they are manufactured. Woven Kevlar, for example, has a highly aligned crystalline structure and is used in protective bulletproof vests. Porous Kevlar aerogels, on the other hand, have been shown to have high thermal insulation.

“Our idea was to use this Kevlar polymer to combine the woven, ordered structure of fibers with the porosity of aerogels to make long, continuous fibers with porous spacing in between,” said Gonzalez. “In this system, the long fibers could resist a mechanical impact while the pores would limit heat diffusion.”

The research team used immersion Rotary Jet-Spinning (iRJS), a technique developed by Parker’s Disease Biophysics Group, to manufacture the fibers. In this technique, a liquid polymer solution is loaded into a reservoir and pushed out through a tiny opening by centrifugal force as the device spins. When the polymer solution shoots out of the reservoir, it first passes through an area of open air, where the polymers elongate and the chains align. Then the solution hits a liquid bath that removes the solvent and precipitates the polymers to form solid fibers. Since the bath is also spinning — like water in a salad spinner — the nanofibers follow the stream of the vortex and wrap around a rotating collector at the base of the device.

By tuning the viscosity of the liquid polymer solution, the researchers were able to spin long, aligned nanofibers into porous sheets — providing enough order to protect against projectiles but enough disorder to protect against heat. In about 10 minutes, the team could spin sheets about 10 by 30 centimeters in size.

To test the sheets, the Harvard team turned to their collaborators to perform ballistic tests. Researchers at CCDC SC in Natick, Massachusetts simulated shrapnel impact by shooting large, BB-like projectiles at the sample. The team performed tests by sandwiching the nanofiber sheets between sheets of woven Twaron. They observed little difference in protection between a stack of all woven Twaron sheets and a combined stack of woven Twaron and spun nanofibers.

“The capabilities of the CCDC SC allow us to quantify the successes of our fibers from the perspective of protective equipment for warfighters, specifically,” said Gonzalez.

“Academic collaborations, especially those with distinguished local universities such as Harvard, provide CCDC SC the opportunity to leverage cutting-edge expertise and facilities to augment our own R&D capabilities,” said Kathleen Swana, a researcher at CCDC SC and one of the paper’s authors. “CCDC SC, in return, provides valuable scientific and soldier-centric expertise and testing capabilities to help drive the research forward.”

In testing for thermal protection, the researchers found that the nanofibers provided 20 times the heat insulation capability of commercial Twaron and Kevlar.

“While there are improvements that could be made, we have pushed the boundaries of what’s possible and started moving the field towards this kind of multifunctional material,” said Gonzalez.

“We’ve shown that you can develop highly protective textiles for people that work in harm’s way,” said Parker. “Our challenge now is to evolve the scientific advances to innovative products for my brothers and sisters in arms.”

Harvard’s Office of Technology Development has filed a patent application for the technology and is actively seeking commercialization opportunities.

Here’s a link to and a citation for the paper,

para-Aramid Fiber Sheets for Simultaneous Mechanical and Thermal Protection in Extreme Environments by Grant M. Gonzalez, Janet Ward, John Song, Kathleen Swana, Stephen A. Fossey, Jesse L. Palmer, Felita W. Zhang, Veronica M. Lucian, Luca Cera, John F. Zimmerman, F. John Burpo, Kevin Kit Parker. Matter DOI: https://doi.org/10.1016/j.matt.2020.06.001 Published:June 29, 2020

This paper is behind a paywall.

While this is the first time I’ve featured clothing/armour that’s protective against explosions I have on at least two occasions featured bulletproof clothing in a Canadian context. A November 4, 2013 posting had a story about a Toronto-based tailoring establishment, Garrison Bespoke, that was going to publicly test a bulletproof business suit. Should you be interested, it is possible to order the suit here. There’s also a February 11, 2020 posting announcing research into “Comfortable, bulletproof clothing for Canada’s Department of National Defence.”