Monthly Archives: September 2020

Hydrogel (a soft, wet material) can memorize, retrieve, and forget information like a human brain

This is fascinating and it’s not a memristor. (You can find out more about memristors here on the Nanowerk website). Getting back to the research, scientists at Hokkaido University (Japan) are training squishy hydrogel to remember according to a July 28, 2020 news item on phys.org (Note: Links have been removed),

Hokkaido University researchers have found a soft and wet material that can memorize, retrieve, and forget information, much like the human brain. They report their findings in the journal Proceedings of the National Academy of Sciences (PNAS).

The human brain learns things, but tends to forget them when the information is no longer important. Recreating this dynamic memory process in manmade materials has been a challenge. Hokkaido University researchers now report a hydrogel that mimics the dynamic memory function of the brain: encoding information that fades with time depending on the memory intensity.

Hydrogels are flexible materials composed of a large percentage of water—in this case about 45%—along with other chemicals that provide a scaffold-like structure to contain the water. Professor Jian Ping Gong, Assistant Professor Kunpeng Cui and their students and colleagues in Hokkaido University’s Institute for Chemical Reaction Design and Discovery (WPI-ICReDD) are seeking to develop hydrogels that can serve biological functions.

“Hydrogels are excellent candidates to mimic biological functions because they are soft and wet like human tissues,” says Gong. “We are excited to demonstrate how hydrogels can mimic some of the memory functions of brain tissue.”

Caption: The hydrogel’s memorizing-forgetting behavior is achieved based on fast water uptake (swelling) at high temperature and slow water release (shrinking) at low temperature, which is enabled by dynamic bonds in the gel. The swelling part turns from transparent to opaque when cooled, enabling memory retrieval. (Chengtao Yu et al., PNAS, July 27, 2020) Credit: Chengtao Yu et al., PNAS, July 27, 2020

A July 27, 2020 Hokkaido University press release (also on EurekAlert but published July 28, 2020), which originated the news item, investigates just how the scientists trained the hydrogel,

In this study, the researchers placed a thin hydrogel between two plastic plates; the top plate had a shape or letters cut out, leaving only that area of the hydrogel exposed. For example, patterns included an airplane and the word “GEL.” They initially placed the gel in a cold water bath to establish equilibrium. Then they moved the gel to a hot bath. The gel absorbed water into its structure causing a swell, but only in the exposed area. This imprinted the pattern, which is like a piece of information, onto the gel. When the gel was moved back to the cold water bath, the exposed area turned opaque, making the stored information visible, due to what they call “structure frustration.” At the cold temperature, the hydrogel gradually shrank, releasing the water it had absorbed. The pattern slowly faded. The longer the gel was left in the hot water, the darker or more intense the imprint would be, and therefore the longer it took to fade or “forget” the information. The team also showed hotter temperatures intensified the memories.

“This is similar to humans,” says Cui. “The longer you spend learning something or the stronger the emotional stimuli, the longer it takes to forget it.”

The team showed that the memory established in the hydrogel is stable against temperature fluctuation and large physical stretching. More interestingly, the forgetting processes can be programmed by tuning the thermal learning time or temperature. For example, when they applied different learning times to each letter of “GEL,” the letters disappeared sequentially.

The team used a hydrogel containing materials called polyampholytes or PA gels. The memorizing-forgetting behavior is achieved based on fast water uptake and slow water release, which is enabled by dynamic bonds in the hydrogels. “This approach should work for a variety of hydrogels with physical bonds,” says Gong.

“The hydrogel’s brain-like memory system could be explored for some applications, such as disappearing messages for security,” Cui added.

Here’s a link to and a citation for the paper,

Hydrogels as dynamic memory with forgetting ability by Chengtao Yu, Honglei Guo, Kunpeng Cui, Xueyu Li, Ya Nan Ye, Takayuki Kurokawa, and Jian Ping Gong. PNAS August 11, 2020 117 (32) 18962-18968 DOI: https://doi.org/10.1073/pnas.2006842117 First published July 27, 2020

This paper is behind a paywall.

Neurotransistor for brainlike (neuromorphic) computing

According to researchers at Helmholtz-Zentrum Dresden-Rossendorf and the rest of the international team collaborating on the work, it’s time to look more closely at plasticity in the neuronal membrane,.

From the abstract for their paper, Intrinsic plasticity of silicon nanowire neurotransistors for dynamic memory and learning functions by Eunhye Baek, Nikhil Ranjan Das, Carlo Vittorio Cannistraci, Taiuk Rim, Gilbert Santiago Cañón Bermúdez, Khrystyna Nych, Hyeonsu Cho, Kihyun Kim, Chang-Ki Baek, Denys Makarov, Ronald Tetzlaff, Leon Chua, Larysa Baraban & Gianaurelio Cuniberti. Nature Electronics volume 3, pages 398–408 (2020) DOI: https://doi.org/10.1038/s41928-020-0412-1 Published online: 25 May 2020 Issue Date: July 2020

Neuromorphic architectures merge learning and memory functions within a single unit cell and in a neuron-like fashion. Research in the field has been mainly focused on the plasticity of artificial synapses. However, the intrinsic plasticity of the neuronal membrane is also important in the implementation of neuromorphic information processing. Here we report a neurotransistor made from a silicon nanowire transistor coated by an ion-doped sol–gel silicate film that can emulate the intrinsic plasticity of the neuronal membrane.

Caption: Neurotransistors: from silicon chips to neuromorphic architecture. Credit: TU Dresden / E. Baek Courtesy: Helmholtz-Zentrum Dresden-Rossendorf

A July 14, 2020 news item on Nanowerk announced the research (Note: A link has been removed),

Especially activities in the field of artificial intelligence, like teaching robots to walk or precise automatic image recognition, demand ever more powerful, yet at the same time more economical computer chips. While the optimization of conventional microelectronics is slowly reaching its physical limits, nature offers us a blueprint how information can be processed and stored quickly and efficiently: our own brain.

For the very first time, scientists at TU Dresden and the Helmholtz-Zentrum Dresden-Rossendorf (HZDR) have now successfully imitated the functioning of brain neurons using semiconductor materials. They have published their research results in the journal Nature Electronics (“Intrinsic plasticity of silicon nanowire neurotransistors for dynamic memory and learning functions”).

A July 14, 2020 Helmholtz-Zentrum Dresden-Rossendorf press release (also on EurekAlert), which originated the news items delves further into the research,

Today, enhancing the performance of microelectronics is usually achieved by reducing component size, especially of the individual transistors on the silicon computer chips. “But that can’t go on indefinitely – we need new approaches”, Larysa Baraban asserts. The physicist, who has been working at HZDR since the beginning of the year, is one of the three primary authors of the international study, which involved a total of six institutes. One approach is based on the brain, combining data processing with data storage in an artificial neuron.

“Our group has extensive experience with biological and chemical electronic sensors,” Baraban continues. “So, we simulated the properties of neurons using the principles of biosensors and modified a classical field-effect transistor to create an artificial neurotransistor.” The advantage of such an architecture lies in the simultaneous storage and processing of information in a single component. In conventional transistor technology, they are separated, which slows processing time and hence ultimately also limits performance.

Silicon wafer + polymer = chip capable of learning

Modeling computers on the human brain is no new idea. Scientists made attempts to hook up nerve cells to electronics in Petri dishes decades ago. “But a wet computer chip that has to be fed all the time is of no use to anybody,” says Gianaurelio Cuniberti from TU Dresden. The Professor for Materials Science and Nanotechnology is one of the three brains behind the neurotransistor alongside Ronald Tetzlaff, Professor of Fundamentals of Electrical Engineering in Dresden, and Leon Chua [emphasis mine] from the University of California at Berkeley, who had already postulated similar components in the early 1970s.

Now, Cuniberti, Baraban and their team have been able to implement it: “We apply a viscous substance – called solgel – to a conventional silicon wafer with circuits. This polymer hardens and becomes a porous ceramic,” the materials science professor explains. “Ions move between the holes. They are heavier than electrons and slower to return to their position after excitation. This delay, called hysteresis, is what causes the storage effect.” As Cuniberti explains, this is a decisive factor in the functioning of the transistor. “The more an individual transistor is excited, the sooner it will open and let the current flow. This strengthens the connection. The system is learning.”

Cuniberti and his team are not focused on conventional issues, though. “Computers based on our chip would be less precise and tend to estimate mathematical computations rather than calculating them down to the last decimal,” the scientist explains. “But they would be more intelligent. For example, a robot with such processors would learn to walk or grasp; it would possess an optical system and learn to recognize connections. And all this without having to develop any software.” But these are not the only advantages of neuromorphic computers. Thanks to their plasticity, which is similar to that of the human brain, they can adapt to changing tasks during operation and, thus, solve problems for which they were not originally programmed.

I highlighted Dr. Leon Chua’s name as he was one of the first to conceptualize the notion of a memristor (memory resistor), which is what the press release seems to be referencing with the mention of artificial synapses. Dr. Chua very kindly answered a few questions for me about his work which I published in an April 13, 2010 posting (scroll down about 40% of the way).

Transforming electronics with metal-breathing bacteria

‘Metal-breathing’ bacteria, eh? A July 28, 2020 news item on Nanowerk announces the research into new materials for electronics (Note: A link has been removed),

When the Shewanella oneidensis bacterium “breathes” in certain metal and sulfur compounds anaerobically, the way an aerobic organism would process oxygen, it produces materials that could be used to enhance electronics, electrochemical energy storage, and drug-delivery devices.

The ability of this bacterium to produce molybdenum disulfide – a material that is able to transfer electrons easily, like graphene – is the focus of research published in Biointerphases (“Synthesis and characterization of molybdenum disulfide nanoparticles in Shewanella oneidensis MR-1 biofilms”) by a team of engineers from Rensselaer Polytechnic Institute.

A July 28, 2020 Rensselaer Polytechnic Institute (RPI) news release (also on EurekAlert) by Torie Wells, which originated the news item, describes the work in more detail,

“This has some serious potential if we can understand this process and control aspects of how the bacteria are making these and other materials,” said Shayla Sawyer, an associate professor of electrical, computer, and systems engineering at Rensselaer.

The research was led by James Rees, who is currently a postdoctoral research associate under the Sawyer group in close partnership and with the support of the Jefferson Project at Lake George — a collaboration between Rensselaer, IBM Research, and The FUND for Lake George that is pioneering a new model for environmental monitoring and prediction. This research is an important step toward developing a new generation of nutrient sensors that can be deployed on lakes and other water bodies.

“We find bacteria that are adapted to specific geochemical or biochemical environments can create, in some cases, very interesting and novel materials,” Rees said. “We are trying to bring that into the electrical engineering world.”

Rees conducted this pioneering work as a graduate student, co-advised by Sawyer and Yuri Gorby, the third author on this paper. Compared with other anaerobic bacteria, one thing that makes Shewanella oneidensis particularly unusual and interesting is that it produces nanowires capable of transferring electrons [emphasis mine].

“That lends itself to connecting to electronic devices that have already been made,” Sawyer said. “So, it’s the interface between the living world and the manmade world that is fascinating.”

Sawyer and Rees also found that, because their electronic signatures can be mapped and monitored, bacterial biofilms could also act as an effective nutrient sensor that could provide Jefferson Project researchers with key information about the health of an aquatic ecosystem like Lake George.

“This groundbreaking work using bacterial biofilms represents the potential for an exciting new generation of ‘living sensors,’ which would completely transform our ability to detect excess nutrients in water bodies in real-time. This is critical to understanding and mitigating harmful algal blooms and other important water quality issues around the world,” said Rick Relyea, director of the Jefferson Project.

Sawyer and Rees plan to continue exploring how to optimally develop this bacterium to harness its wide-ranging potential applications.

“We sometimes get the question with the research: Why bacteria? Or, why bring microbiology into materials science?” Rees said. “Biology has had such a long run of inventing materials through trial and error. The composites and novel structures invented by human scientists are almost a drop in the bucket compared to what biology has been able to do.”

Here’s a link to and a citation for the paper,

Synthesis and characterization of molybdenum disulfide nanoparticles in Shewanella oneidensis MR-1 biofilms by James D. Rees, Yuri A. Gorby, and Shayla M. Sawyer. Biointerphases 15, 041006 (2020) DOI: https://doi.org/10.1116/6.0000199 Published Online: 24 July 2020

This paper is behind a paywall.

7th annual Vancouver Nanomedicine Day, Sept. 17, 2020

Like so many events these days (COVID-19 days), this event put on by Canada’s NanoMedicines Innovation Network (NMIN) will be held virtually. Here’s more from the ‘Virtual’ Vancouver Nanomedicine Day 2020 event page on the NMIN website,

This world-class symposium, the sixth event of its kind, will bring together a record number (1000+) of renowned Canadian and international experts from across the nanomedicines field to:

  • highlight the discoveries and innovations in nanomedicines that are contributing to global progress in acute, chronic and orphan disease treatment and management;
  • present up-to-date diagnostic and therapeutic  nanomedicine approaches to addressing the challenges of COVID-19; and
  • facilitate discussion among nanomedicine researchers and innovators and UBC and NMIN clinician-scientists, basic researchers, trainees, and research partners.

Since 2014, Vancouver Nanomedicine Day has advanced nanomedicine research, knowledge mobilization and commercialization in Canada by sharing high-impact findings and facilitating interaction—among researchers, postdoctoral fellows, graduate students, and life science and startup biotechnology companies—to catalyze research collaboration.

Here are a few highlights from the ‘Virtual’ Vancouver Nanomedicine Day 2020 event page,

  • An introduction to nanomedicines by Dr. Emmanuel Ho (University of Waterloo)
  • A keynote address by an iconic nanomedicine innovator: Dr. Robert Langer (MIT, Department of Chemical Engineering)
  • Invited talks by internationally renowned experts, including Dr. Vito Foderà (The University of Copenhagen, Denmark); Dr. Lucia Gemma Delogu (University of Padova, Italy); and Dr. Christine Allen (University of Toronto)
  • A virtual poster competition, with cash prizes for the top posters
  • A debate on whether “nanomedicines are still the next big thing” between Marcel Bally (proponent) and Kishor Wasan (opponent)

You can get the Program in PDF.

Registration is free. But you must Register.

Here’s the event poster,

[downloaded from https://www.nanomedicines.ca/nmd-2020/]

I have a few observations, First, Robert Langer is a big deal. Here are a few highlights from his Wikipedia entry (Note: Links have been removed),

Robert Samuel Langer, Jr. FREng[2] (born August 29, 1948) is an American chemical engineer, scientist, entrepreneur, inventor and one of the twelve Institute Professors at the Massachusetts Institute of Technology.[3]

Langer holds over 1,350 granted or pending patents.[3][29] He is one of the world’s most highly cited researchers, having authored nearly 1,500 scientific papers, and has participated in the founding of multiple technology companies.[30][31]

Langer is the youngest person in history (at 43) to be elected to all three American science academies: the National Academy of Sciences, the National Academy of Engineering and the Institute of Medicine. He was also elected as a charter member of National Academy of Inventors.[32] He was elected as an International Fellow[2] of the Royal Academy of Engineering[2] in 2010.

It’s all about commercializing the research—or is it?

(This second observation is a little more complicated and requires a little context.) The NMIN is one of Canada’s Networks of Centres of Excellence (who thought that name up? …sigh), from the NMIN About page,

NMIN is funded by the Government of Canada through the Networks of Centres of Excellence (NCE) Program.

The NCEs seem to be firmly fixed on finding pathways to commercialization (from the NCE About page) Note: All is not as it seems,

Canada’s global economic competitiveness [emphasis mine] depends on making new discoveries and transforming them into products, services [emphasis mine] and processes that improve the lives of Canadians. To meet this challenge, the Networks of Centres of Excellence (NCE) offers a suite of programs that mobilize Canada’s best research, development and entrepreneurial [emphasis mine] expertise and focus it on specific issues and strategic areas.

NCE programs meet Canada’s needs to focus a critical mass of research resources on social and economic challenges, commercialize [emphasis mine] and apply more of its homegrown research breakthroughs, increase private-sector R&D, [emphasis mine] and train highly qualified people. As economic [emphasis mine] and social needs change, programs have evolved to address new challenges.

Interestingly, the NCE is being phased out,

As per the December 2018 NCE Program news, funding for the Networks of Centres of Excellence (NCE) Program will be gradually transferred to the New Frontiers in Research Fund (NFRF).

The new agency, NFRF, appears to have a completely different mandate, from the NFRF page on the Canada Research Coordinating Committee webspace,

The Canada Research Coordinating Committee designed the New Frontiers in Research Fund (NFRF) following a comprehensive national consultation, which involved Canadian researchers, research administrators, stakeholders and the public. NFRF is administered by the Tri-agency Institutional Programs Secretariat, which is housed within the Social Sciences and Humanities Research Council (SSHRC), on behalf of Canada’s three research granting agencies: the Canadian Institutes of Health Research, the Natural Sciences and Engineering Research Council and SSHRC.

The fund will invest $275 million over the next 5 years beginning in fiscal 2018-19, and $65 million ongoing, to fund international, interdisciplinary, fast-breaking and high-risk research.

NFRF is composed of three streams to support groundbreaking research.

  • Exploration generates opportunities for Canada to build strength in high-risk, high-reward and interdisciplinary research;
  • Transformation provides large-scale support for Canada to build strength and leadership in interdisciplinary and transformative research; and
  • International enhances opportunities for Canadian researchers to participate in research with international partners.

As you can see there’s no reference to commercialization or economic challenges.

Personally

Here at last is the second observation, I find it hard to believe that the government of Canada has given up on the idea of commercializing research and increasing the country’s economic competitiveness through research. Certainly, Langer’s virtual appearance at Vancouver Nanomedicine Day 2020, suggests that at least some corners of the Canadian research establishment are remaining staunchly entrepreneurial.

After all, the only Canadian government ministry with science in its name is this one: Innovation, Science and Economic Development Canada (ISED), as of Sept. 11, 2020.. (The other ‘science’ ministries are Natural Resources Canada, Environment and Climate Change Canada, Fisheries and Oceans Canada, Health Canada, and Agriculture and Agri-Food Canada.) ISED is not exactly subtle. Intriguingly the latest review on the state of science and technology in Canada was released on April 10, 2018 (from the April 10, 2018 Council of Canadian Academies CCA] news release),

Canada remains strong in research output and impact, capacity for R&D and innovation at risk: New expert panel report

While Canada is a highly innovative country, with a robust research base and thriving communities of technology start-ups, significant barriers—such as a lack of managerial skills, the experience needed to scale-up companies, and foreign acquisition of high-tech firms—often prevent the translation of innovation into wealth creation.[emphasis mine] The result is a deficit of technology companies growing to scale in Canada, and a loss of associated economic and social benefits.This risks establishing a vicious cycle, where successful companies seek growth opportunities elsewhere due to a lack of critical skills and experience in Canada guiding companies through periods of rapid expansion.

According to the CCA’s [2018 report] Summary webpage, it was Innovation, Science and Economic Development Canada which requested the report. (I wrote up a two-part commentary under one of my favourite titles: “The Hedy Lamarr of international research: Canada’s Third assessment of The State of Science and Technology and Industrial Research and Development in Canada.” Part 1 and Part 2)

I will be fascinated to watch the NFRF and science commercialization situations as they develop.

In the meantime, you can sign up for free to attend the ‘Virtual’ Vancouver Nanomedicine Day 2020.

Brain-inspired computer with optimized neural networks

Caption: Left to right: The experiment was performed on a prototype of the BrainScales-2 chip; Schematic representation of a neural network; Results for simple and complex tasks. Credit: Heidelberg University

I don’t often stumble across research from the European Union’s flagship Human Brain Project. So, this is a delightful occurrence especially with my interest in neuromorphic computing. From a July 22, 2020 Human Brain Project press release (also on EurekAlert),

Many computational properties are maximized when the dynamics of a network are at a “critical point”, a state where systems can quickly change their overall characteristics in fundamental ways, transitioning e.g. between order and chaos or stability and instability. Therefore, the critical state is widely assumed to be optimal for any computation in recurrent neural networks, which are used in many AI [artificial intelligence] applications.

Researchers from the HBP [Human Brain Project] partner Heidelberg University and the Max-Planck-Institute for Dynamics and Self-Organization challenged this assumption by testing the performance of a spiking recurrent neural network on a set of tasks with varying complexity at – and away from critical dynamics. They instantiated the network on a prototype of the analog neuromorphic BrainScaleS-2 system. BrainScaleS is a state-of-the-art brain-inspired computing system with synaptic plasticity implemented directly on the chip. It is one of two neuromorphic systems currently under development within the European Human Brain Project.

First, the researchers showed that the distance to criticality can be easily adjusted in the chip by changing the input strength, and then demonstrated a clear relation between criticality and task-performance. The assumption that criticality is beneficial for every task was not confirmed: whereas the information-theoretic measures all showed that network capacity was maximal at criticality, only the complex, memory intensive tasks profited from it, while simple tasks actually suffered. The study thus provides a more precise understanding of how the collective network state should be tuned to different task requirements for optimal performance.

Mechanistically, the optimal working point for each task can be set very easily under homeostatic plasticity by adapting the mean input strength. The theory behind this mechanism was developed very recently at the Max Planck Institute. “Putting it to work on neuromorphic hardware shows that these plasticity rules are very capable in tuning network dynamics to varying distances from criticality”, says senior author Viola Priesemann, group leader at MPIDS. Thereby tasks of varying complexity can be solved optimally within that space.

The finding may also explain why biological neural networks operate not necessarily at criticality, but in the dynamically rich vicinity of a critical point, where they can tune their computation properties to task requirements. Furthermore, it establishes neuromorphic hardware as a fast and scalable avenue to explore the impact of biological plasticity rules on neural computation and network dynamics.

“As a next step, we now study and characterize the impact of the spiking network’s working point on classifying artificial and real-world spoken words”, says first author Benjamin Cramer of Heidelberg University.

Here’s a link to and a citation for the paper,

Control of criticality and computation in spiking neuromorphic networks with plasticity by Benjamin Cramer, David Stöckel, Markus Kreft, Michael Wibral, Johannes Schemmel, Karlheinz Meier & Viola Priesemann. Nature Communications volume 11, Article number: 2853 (2020) DOI: https://doi.org/10.1038/s41467-020-16548-3 Published: 05 June 2020

This paper is open access.

Water-based gold rush

It seems water can play an important role when using nanocatalysts made of gold nanoparticles combined with metal oxides. From a July 27, 2020 news item on ScienceDaily,

Nanocatalysts made of gold nanoparticles dispersed on metal oxides are very promising for the industrial, selective oxidation of compounds, including alcohols, into valuable chemicals. They show high catalytic activity, particularly in aqueous solution. A team of researchers from Ruhr-Universität Bochum (RUB) has been able to explain why: Water molecules play an active role in facilitating the oxygen dissociation needed for the oxidation reaction. The team of Professor Dominik Marx, Chair of Theoretical Chemistry, reports in the high-impact journal ACS Catalysis on 14 July 2020.

A July 27, 2020 Ruhr-University Bochum (RUB) press release (also on EurekAlert), which originated the news item, offers more detail,

Rushing for gold

Most industrial oxidation processes involve the use of agents, such as chlorine or organic peroxides, that produce toxic or useless by-products. Instead, using molecular oxygen, O2, and splitting it to obtain the oxygen atoms needed to produce specific products would be a greener and more attractive solution. A promising medium for this approach is the gold/metal oxide (Au/TiO2) system, where the metal oxide titania (TiO2) supports nanoparticles of gold. These nanocatalysts can catalyse the selective oxidation of molecular hydrogen, carbon monoxide and especially alcohols, among others. A crucial step behind all reactions is the dissociation of O2, which comprises a usually high energy barrier. And a crucial unknown in the process is the role of water, since the reactions take place in aqueous solutions.

In a 2018 study, the RUB group of Dominik Marx, Chair of Theoretical Chemistry and Research Area coordinator in the Cluster of Excellence Ruhr Explores Solvation (Resolv), already hinted that water molecules actively participate in the oxidative reaction: They enable a stepwise charge-transfer process that leads to oxygen dissociation in the aqueous phase. Now, the same team reveals that solvation facilitates the activation of molecular oxygen (O2) at the gold/metal oxide (Au/TiO2) nanocatalyst: In fact, water molecules help to decrease the energy barrier for the O2 dissociation. The researchers quantified that the solvent curbs the energy costs by 25 per cent compared to the gas phase. “For the first time, it has been possible to gain insights into the quantitative impact of water on the critical O2 activation reaction for this nanocatalyst – and we also understood why,” says Dominik Marx.

Mind the water molecules

The RUB researchers applied computer simulations, the so-called ab initio molecular dynamics simulations, which explicitly included not only the catalyst but also as many as 80 surrounding water molecules. This was key to gain deep insights into the liquid-phase scenario, which contains water, in direct comparison to the gas phase conditions, where water is absent. “Previous computational work employed significant simplifications or approximations that didn’t account for the true complexity of such a difficult solvent, water,” adds Dr. Niklas Siemer who recently earned his PhD at RUB based on this research.

Scientists simulated the experimental conditions with high temperature and pressure to obtain the free energy profile of O2 in both liquid and gas phase. Finally, they could trace back the mechanistic reason for the solvation effect: Water molecules induce an increase of local electron charge towards oxygen that is anchored at the nanocatalyst perimeter; this in turn leads to the less energetic costs for the dissociation. In the end, say the researchers, it’s all about the unique properties of water: “We found that the polarizability of water and its ability to donate hydrogen bonds are behind oxygen activation,” says Dr. Munoz-Santiburcio. According to the authors, the new computational strategy will help to understand and improve direct oxidation catalysis in water and alcohols.

Here’s a link to and a citation for the paper,

Solvation-Enhanced Oxygen Activation at Gold/Titania Nanocatalysts by Niklas Siemer, Daniel Muñoz-Santiburcio, and Dominik Marx. ACS Catal. 2020, 10, 15, 8530–8534 DOI: https://doi.org/10.1021/acscatal.0c01326 Publication Date: July 14, 2020 Copyright © 2020 American Chemical Society

This paper is behind a paywall.

Elinor Wonders Why—teaching biomimicry to children aged 3 to 6 years old

This new US Public Broadcasting Service (PBS) series for children was first announced a year in advance in a May 29, 2019 PBS news release,

Today [May 29, 2019], PBS KIDS announced the animated series ELINOR WONDERS WHY, set to premiere Labor Day [September 7] 2020. ELINOR WONDERS WHY aims to encourage children to follow their curiosity, ask questions when they don’t understand and find answers using science inquiry skills. The main character Elinor, the most observant and curious bunny rabbit in Animal Town, will introduce kids ages 3-5 to science, nature and community through adventures with her friends. This new multiplatform series, created by Jorge Cham and Daniel Whiteson and produced in partnership with Pipeline Studios, will debut nationwide on PBS stations, the PBS KIDS 24/7 channel and PBS KIDS digital platforms. 

The stories in ELINOR WONDERS WHY center around Elinor and her friends Ari, a funny and imaginative bat, and Olive, a perceptive and warm elephant. As kids explore Animal Town, they will meet all kinds of interesting, funny, and quirky characters, each with something to teach us about respecting others, the importance of diversity, caring for the environment, and working together to solve problems. In each episode, Elinor models the foundational practices of science inquiry and engineering design — including her amazing powers of observation and willingness to ask questions and investigate. When she encounters something she doesn’t understand, like why birds have feathers or how tiny ants build massive anthills, she just can’t let it go until she figures it out. And in discovering the answers, Elinor often learns something about nature’s ingenious inventions and how they can connect to ideas in our designed world, and what it takes to live in a community. ELINOR WONDERS WHY encourages children and parents to ask their own questions and experience the joy of discovery and understanding together.

Starr Rhett Rocque’s Sept. 7, 2020 article for Fast Company offers more detail,

Elinor Wonders Why is a STEM [science, technology, engineering, and mathematics]-based cartoon series created by Daniel Whiteson, a physicist and astronomer, and Jorge Cham, a cartoonist and robotics engineer. They’re both parents of small children, so they understand how to encourage curiosity through science and how to break down complex concepts.

Cham and Whiteson have been partners for years, working together on PhD Comics, which is a webcomic, YouTube, and podcast universe dedicated to PhD student humor. Linda Simensky, head of content for PBS Kids, had been a fan of their work, and when the opportunity to create a preschool science show that focuses on biomimicry came up, she figured they’d be great for the job.

“Biomimicry is basically taking things that you learn in nature and in the outdoors and in the natural world, and using them for inventions and for innovation science,” says Simensky. “The classic example that they use in the pilot is how Velcro was designed. Basically, it was inspired by someone getting burdock stuck to his pants, and that’s what inspired Velcro, so that’s the classic example of finding something in nature that solves a problem that you need to solve in real life.”

Elinor Wonders Why centers around Elinor (named after Cham’s daughter), a curious and observant rabbit living in Animal Town who goes on various adventures. In the upcoming premiere, Elinor plays hide-and-go-seek with her friends and finds out how animals hide in nature. …

Rocque went on to interview Cham, Whiteson, and Simensky,

FC: Describe the overall process of “dumbing down” highly sophisticated content for a younger audience. Was it harder than you thought?

JC: There was definitely a learning curve, but fortunately everyone at PBS, our team of science and education specialists have been great collaborators and guides. We don’t really believe in the phrase “dumbing down.” …

DW: Something important for us was to make each episode about a single question that a real kid would have. We looked for topics that any typical kid would think, “Huh, I do wonder why that is?” The kinds of questions they might ask when they look at their own world, like, “Why do birds have feathers?” or “Why do lizards sit in the sun?” It’s also important for us that the kids in the show play an active part in finding the answers, so we pick questions that kids could answer themselves using basic scientific thinking and simple tools, simple experiments, making observations, and comparing and contrasting. This made the questions and answers accessible, and also hopefully provides a model for them to follow at home.

LS: The part of it that’s the hardest is getting everything to work for the same age group. That’s the first thing. So, when you’re doing that, you’re doing several things at a time. You’re coming up with the idea for the show and you have to make sure that you know exactly who your age group is, and in the case of Elinor, it’s kids between the ages of 3 and 6. That’s a typical preschool group, and that includes kids who are in kindergarten, and even within 3 to 6, that’s obviously a pretty big range of kids. …

PBS does have an Elinor Wonders Why website but some of the materials (videos) are restricted to viewers based in the US. As for broadcast times, check your local PBS station, should you have one.

Taxonomies (classification schemes) rouse passions

There seems to have been some lively debate among biologists about matters most of us treat as invisible: naming, establishing, and classifying categories. These activities can become quite visible when learning a new language, e.g., French which divides nouns into two genders or German which classifies nouns with any of three genders.

A July 26, 2020 essay by Stephen Garnett (Professor of Conservation and Sustainable Livelihoods, Charles Darwin University, Australia), Les Christidis (Professor, Southern Cross University, Australia), Richard L. Pyle (Associate lecturer, University of Hawaii, US), and Scott Thomson (Research associate, Universidade de São Paulo, Brazil) for The Conversation (also on phys.org but published July 27, 2020) describes a very heated debate over taxonomy,

Taxonomy, or the naming of species, is the foundation of modern biology. It might sound like a fairly straightforward exercise, but in fact it’s complicated and often controversial.

Why? Because there’s no one agreed list of all the world’s species. Competing lists exist for organisms such as mammals and birds, while other less well-known groups have none. And there are more than 30 definitions of what constitutes a species [emphasis mine]. This can make life difficult for biodiversity researchers and those working in areas such as conservation, biosecurity and regulation of the wildlife trade.

In the past few years, a public debate erupted among global taxonomists, including those who authored and contributed to this article, about whether the rules of taxonomy should be changed. Strongly worded ripostes were exchanged. A comparison to Stalin [emphasis mine] was floated.

Here’s how it started,

In May 2017 two of the authors, Stephen Garnett and Les Christidis, published an article in Nature. They argued taxonomy needed rules around what should be called a species, because currently there are none. They wrote:

” … for a discipline aiming to impose order on the natural world, taxonomy (the classification of complex organisms) is remarkably anarchic […] There is reasonable agreement among taxonomists that a species should represent a distinct evolutionary lineage. But there is none about how a lineage should be defined.

‘Species’ are often created or dismissed arbitrarily, according to the individual taxonomist’s adherence to one of at least 30 definitions. Crucially, there is no global oversight of taxonomic decisions — researchers can ‘split or lump’ species with no consideration of the consequences.”

Garnett and Christidis proposed that any changes to the taxonomy of complex organisms be overseen by the highest body in the global governance of biology, the International Union of Biological Sciences (IUBS), which would “restrict […] freedom of taxonomic action.”

… critics rejected the description of taxonomy as “anarchic”. In fact, they argued there are detailed rules around the naming of species administered by groups such as the International Commission on Zoological Nomenclature and the International Code of Nomenclature for algae, fungi, and plants. For 125 years, the codes have been almost universally adopted by scientists.

So in March 2018, 183 researchers – led by Scott Thomson and Richard Pyle – wrote an animated response to the Nature article, published in PLoS Biology [PLoS is Public Library of Science; it is an open access journal].

They wrote that Garnett and Christidis’ IUBS proposal was “flawed in terms of scientific integrity […] but is also untenable in practice”. They argued:

“Through taxonomic research, our understanding of biodiversity and classifications of living organisms will continue to progress. Any system that restricts such progress runs counter to basic scientific principles, which rely on peer review and subsequent acceptance or rejection by the community, rather than third-party regulation.”

In a separate paper, another group of taxonomists accused Garnett and Christidis of trying to suppress freedom of scientific thought, likening them to Stalin’s science advisor Trofim Lysenko.

The various parties did come together,

We hope by 2030, a scientific debate that began with claims of anarchy might lead to a clear governance system – and finally, the world’s first endorsed global list of species.

As for how they got to a “clear governance system”, there’s the rest of the July 26, 2020 essay on The Conversation or there’s the copy on phys.org (published July 27, 2020).

Nanoparticles and the gut health of major living species of animals

A July 27, 2020 news item on Nanowerk announces research into gut health described as seminal (Note: A link has been removed),

An international team of scientists has completed the first ever study into the potential impact of naturally occurring and man-made nanoparticles on the health of all types of the major living species of animals.

Conceived by researchers at the University of Plymouth, as part of the EU [European Union] Nanofase project, the study assessed how the guts of species from honey bees to humans could protect against the bioaccumulation and toxicological effects of engineered nanomaterials (ENMs) found within the environment.

A July 27, 2020 University of Plymouth press release, which originated the news item, provides more detail,

It showed that the digestive systems of many species have evolved to act as a barrier guarding against the absorption of potentially damaging particles.

However, invertebrates such as earthworms also have roving cells within their guts, which can take up ENMs and transfer them to the gut wall.

This represents an additional risk for many invertebrate species where the particles can be absorbed via these roving cells, with consequent effects on internal organs having the potential to cause lasting damage.

Fortunately, this process is not replicated in humans and other vertebrate animals, however there is still the potential for nanomaterials to have a negative impact through the food chain.

The study, published in the July [2020] edition of Environmental Science: Nano, involved scientists from the UK, the Netherlands, Slovenia and Portugal and focused on particles measuring up to 100 nanometres (around 1/10 millionth of a metre).

It combined existing and new research into species including insects and other invertebrates, fish, birds, and mammals, as well as identifying knowledge gaps on reptiles and amphibians. The study provides the first comprehensive overview of how differences in gut structure can affect the impact of ENMs across the animal kingdom.

Richard Handy, Professor of Environmental Toxicology at the University of Plymouth and the study’s senior author, said:

“This is a seminal piece work that combines nearly 100 years of zoology research with our current understanding of nanotechnology.

“The threats posed by engineered nanomaterials are becoming better known, but this study provides the first comprehensive and species-level assessment of how they might pose current and future threats. It should set the foundations for understanding the dietary hazard in the animal kingdom.”

Nanomaterials come in three forms – naturally occurring, incidentally occurring from human activities, and deliberately manufactured – and their use has increased exponentially in the last decade.

They have consistently found new applications in a wide variety of industrial sectors, including electrical appliances, medicines, cleaning products and textiles.

Professor Handy, who has advised organisations including the Organisation for Economic Co-operation and Development and the United States National Nanotechnology Initiative, added:

“Nanoparticles are far too small for the human eye to see but that doesn’t mean they cannot cause harm to living species. The review element of this study has shown they have actually been written about for many decades, but it is only recently that we have begun to understand the various ways they occur and now the extent to which they can be taken up. Our new EU project, NanoHarmony, looks to build on that knowledge and we are currently working with Public Health England and others to expand our method for detecting nanomaterials in tissues for food safety and other public health matters.”

Here’s a link to and a citation for the paper,

The gut barrier and the fate of engineered nanomaterials: a view from comparative physiology by Meike van der Zande, Anita Jemec Kokalj, David J. Spurgeon, Susana Loureiro, Patrícia V. Silva, Zahra Khodaparast, Damjana Drobne, Nathaniel J. Clark, Nico W. van den Brink, Marta Baccaro, Cornelis A. M. van Gestel, Hans Bouwmeester and Richard D. Handy. Environmental Science: Nano, Issue 7 (July 2020) DOI: 10.1039/D0EN00174K First published 27 Apr 2020

This article is open access.

If you’re curious about Nanofase (Nanomaterial FAte and Speciation in the Environment), there’s more here and there’s more about NanoHarmony here.