Tag Archives: algae

Iridescent giant clams could point the way to safety, climatologically speaking

Giant clams in Palau (Cynthia Barnett)

These don’t look like any clams I’ve ever seen but that is the point of Cynthia Barnett’s absorbing Sept. 10, 2018 article for The Atlantic (Note: A link has been removed),

Snorkeling amid the tree-tangled rock islands of Ngermid Bay in the western Pacific nation of Palau, Alison Sweeney lingers at a plunging coral ledge, photographing every giant clam she sees along a 50-meter transect. In Palau, as in few other places in the world, this means she is going to be underwater for a skin-wrinkling long time.

At least the clams are making it easy for Sweeney, a biophysicist at the University of Pennsylvania. The animals plump from their shells like painted lips, shimmering in blues, purples, greens, golds, and even electric browns. The largest are a foot across and radiate from the sea floor, but most are the smallest of the giant clams, five-inch Tridacna crocea, living higher up on the reef. Their fleshy Technicolor smiles beam in all directions from the corals and rocks of Ngermid Bay.

… Some of the corals are bleached from the conditions in Ngermid Bay, where naturally high temperatures and acidity mirror the expected effects of climate change on the global oceans. (Ngermid Bay is more commonly known as “Nikko Bay,” but traditional leaders and government officials are working to revive the indigenous name of Ngermid.)

Even those clams living on bleached corals are pulsing color, like wildflowers in a white-hot desert. Sweeney’s ponytail flows out behind her as she nears them with her camera. They startle back into their fluted shells. Like bashful fairytale creatures cursed with irresistible beauty, they cannot help but draw attention with their sparkly glow.

Barnett makes them seem magical and perhaps they are (Note: A link has been removed),

It’s the glow that drew Sweeney’s attention to giant clams, and to Palau, a tiny republic of more than 300 islands between the Philippines and Guam. Its sun-laden waters are home to seven of the world’s dozen giant-clam species, from the storied Tridacna gigas—which can weigh an estimated 550 pounds and measure over four feet across—to the elegantly fluted Tridacna squamosa. Sweeney first came to the archipelago in 2009, while working on animal iridescence as a post-doctoral fellow at the University of California at Santa Barbara. Whether shimmering from a blue morpho butterfly’s wings or a squid’s skin, iridescence is almost always associated with a visual signal—one used to attract mates or confuse predators. Giant clams’ luminosity is not such a signal. So, what is it?

In the years since, Sweeney and her colleagues have discovered that the clams’ iridescence is essentially the outer glow of a solar transformer—optimized over millions of years to run on sunlight and algal biofuel. Giant clams reach their cartoonish proportions thanks to an exceptional ability to grow their own photosynthetic algae in vertical farms spread throughout their flesh. Sweeney and other scientists think this evolved expertise may shed light on alternative fuel technologies and other industrial solutions for a warming world.

Barnett goes on to describe Palau’s relationship to the clams and the clams’ environment,

Palau’s islands have been inhabited for at least 3,400 years, and from the start, giant clams were a staple of diet, daily life, and even deity. Many of the islands’ oldest-surviving tools are crafted of thick giant-clam shell: arched-blade adzes, fishhooks, gougers, heavy taro-root pounders. Giant-clam shell makes up more than three-fourths of some of the oldest shell middens in Palau, a percentage that decreases through the centuries. Archaeologists suggest that the earliest islanders depleted the giant clams that crowded the crystalline shallows, then may have self-corrected. Ancient Palauan conservation law, known as bul, prohibited fishing during critical spawning periods, or when a species showed signs of over-harvesting.

Before the Christianity that now dominates Palauan religion sailed in on eighteenth-century mission ships, the culture’s creation lore began with a giant clam called to life in an empty sea. The clam grew bigger and bigger until it sired Latmikaik, the mother of human children, who birthed them with the help of storms and ocean currents.

The legend evokes giant clams in their larval phase, moving with the currents for their first two weeks of life. Before they can settle, the swimming larvae must find and ingest one or two photosynthetic alga, which later multiply, becoming self-replicating fuel cells. After the larvae down the alga and develop a wee shell and a foot, they kick around like undersea farmers, looking for a sunny spot for their crop. When they’ve chosen a well-lit home in a shallow lagoon or reef, they affix to the rock, their shell gaping to the sky. After the sun hits and photosynthesis begins, the microalgae will multiply to millions, or in the case of T. gigas, billions, and clam and algae will live in symbiosis for life.

Giant clam is a beloved staple in Palau and many other Pacific islands, prepared raw with lemon, simmered into coconut soup, baked into a savory pancake, or sliced and sautéed in a dozen other ways. But luxury demand for their ivory-like shells and their adductor muscle, which is coveted as high-end sashimi and an alleged aphrodisiac, has driven T. gigas extinct in China, Taiwan, and other parts of their native habitat. Some of the toughest marine-protection laws in the world, along with giant-clam aquaculture pioneered here, have helped Palau’s wild clams survive. The Palau Mariculture Demonstration Center raises hundreds of thousands of giant clams a year, supplying local clam farmers who sell to restaurants and the aquarium trade and keeping pressure off the wild population. But as other nations have wiped out their clams, Palau’s 230,000-square-mile ocean territory is an increasing target of illegal foreign fishers.

Barnett delves into how the country of Palau is responding to the voracious appetite for the giant clams and other marine life,

Palau, drawing on its ancient conservation tradition of bul, is fighting back. In 2015, President Tommy Remengesau Jr. signed into law the Palau National Marine Sanctuary Act, which prohibits fishing in 80 percent of Palau’s Exclusive Economic Zone and creates a domestic fishing area in the remaining 20 percent, set aside for local fishers selling to local markets. In 2016, the nation received a $6.6 million grant from Japan to launch a major renovation of the Palau Mariculture Demonstration Center. Now under construction at the waterfront on the southern tip of Malakal Island, the new facility will amp up clam-aquaculture research and increase giant-clam production five-fold, to more than a million seedlings a year.

Last year, Palau amended its immigration policy to require that all visitors sign a pledge to behave in an ecologically responsible manner. The pledge, stamped into passports by an immigration officer who watches you sign, is written to the island’s children:

Children of Palau, I take this pledge, as your guest, to preserve and protect your beautiful and unique island home. I vow to tread lightly, act kindly and explore mindfully. I shall not take what is not given. I shall not harm what does not harm me. The only footprints I shall leave are those that will wash away.

The pledge is winning hearts and public-relations awards. But Palau’s existential challenge is still the collective “we,” the world’s rising carbon emissions and the resulting upturns in global temperatures, sea levels, and destructive storms.

F. Umiich Sengebau, Palau’s Minister for Natural Resources, Environment, and Tourism, grew up on Koror and is full of giant-clam proverbs, wisdom and legends from his youth. He tells me a story I also heard from an elder in the state of Airai: that in old times, giant clams were known as “stormy-weather food,” the fresh staple that was easy to collect and have on hand when it was too stormy to go out fishing.

As Palau faces the storms of climate change, Sengebau sees giant clams becoming another sort of stormy-weather food, serving as a secure source of protein; a fishing livelihood; a glowing icon for tourists; and now, an inspiration for alternative energy and other low-carbon technologies. “In the old days, clams saved us,” Sengebau tells me. “I think there’s a lot of power in that, a great power and meaning in the history of clams as food, and now clams as science.”

I highly recommend Barnett’s article, which is one article in a larger series, from a November 6, 2017 The Atlantic press release,

The Atlantic is expanding the global footprint of its science writing today with a multi-year series to investigate life in all of its multitudes. The series, “Life Up Close,” created with support from Howard Hughes Medical Institute’s Department of Science Education (HHMI), begins today at TheAtlantic.com. In the first piece for the project, “The Zombie Diseases of Climate Change,” The Atlantic’s Robinson Meyer travels to Greenland to report on the potentially dangerous microbes emerging from thawing Arctic permafrost.

The project is ambitious in both scope and geographic reach, and will explore how life is adapting to our changing planet. Journalists will travel the globe to examine these changes as they happen to microbes, plants, and animals in oceans, grasslands, forests, deserts, and the icy poles. The Atlantic will question where humans should look for life next: from the Martian subsurface, to Europa’s oceans, to the atmosphere of nearby stars and beyond. “Life Up Close” will feature at least twenty reported pieces continuing through 2018.

“The Atlantic has been around for 160 years, but that’s a mere pinpoint in history when it comes to questions of life and where it started, and where we’re going,” said Ross Andersen, The Atlantic’s senior editor who oversees science, tech, and health. “The questions that this project will set out to tackle are critical; and this support will allow us to cover new territory in new and more ambitious ways.”

About The Atlantic:
Founded in 1857 and today one of the fastest growing media platforms in the industry, The Atlantic has throughout its history championed the power of big ideas and continues to shape global debate across print, digital, events, and video platforms. With its award-winning digital presence TheAtlantic.com and CityLab.com on cities around the world, The Atlantic is a multimedia forum on the most critical issues of our times—from politics, business, urban affairs, and the economy, to technology, arts, and culture. The Atlantic is celebrating its 160th anniversary this year. Bob Cohn is president of The Atlantic and Jeffrey Goldberg is editor in chief.

About the Howard Hughes Medical Institute (HHMI) Department of Science Education:
HHMI is the leading private nonprofit supporter of scientific research and science education in the United States. The Department of Science Education’s BioInteractive division produces free, high quality educational media for science educators and millions of students around the globe, its HHMI Tangled Bank Studios unit crafts powerful stories of scientific discovery for television and big screens, and its grants program aims to transform science education in universities and colleges. For more information, visit www.hhmi.org.

Getting back to the giant clams, sometimes all you can do is marvel, eh?

Spider glue

Caption: An orb spider, glue-maker extraordinaire, at work on a web. Credit: The University of Akron

Scientists are taking inspiration from spiders in their quest to develop better adhesives. (Are they abandoning the gecko? Usually when scientists study adhesiveness, there’s talk of geckos. From a June 5, 2018 news item on ScienceDaily,

Ever wonder why paint peels off the wall during summer’s high humidity? It’s the same reason that bandages separate from skin when we bathe or swim.

Interfacial water, as it’s known, forms a slippery and non-adhesive layer between the glue and the surface to which it is meant to stick, interfering with the formation of adhesive bonds between the two.

Overcoming the effects of interfacial water is one of the challenges facing developers of commercial adhesives.

To find a solution, researchers at The University of Akron (UA) are looking to one of the strongest materials found in nature: spider silk.

The sticky glue that coats the silk threads of spider webs is a hydrogel, meaning it is full of water. One would think, then, that spiders would have difficulty catching prey, especially in humid conditions — but they do not. In fact, their sticky glue, which has been a subject of intensive research for years, is one of the most effective biological glues in all of nature.

A June 4, 2018 University of Akron news release (also on EurekAlert published on June 5, 2018), which originated the news item, provides more detail,

So how is spider glue able to stick in highly humid conditions?

That question was the subject of investigation by UA graduate students Saranshu Singla, Gaurav Amarpuri and Nishad Dhopatkar, who have been working with Dr. Ali Dhinojwala, interim dean of the College of Polymer Science and Polymer Engineering, and Dr. Todd Blackledge, professor of biology in the Integrated Bioscience program. Both professors are principal investigators in UA’s Biomimicry Research Innovation Center [BRIC], which specializes in emulating biological forms, processes, patterns and systems to solve technical challenges.

The team’s findings, which may provide the clue to developing stronger commercial adhesives, can be read in a paper recently published in the journal Nature Communications.

Singla and her colleagues set out to examine the secret behind the success of the common orb spider (Larinioides cornutus) glue and uncover how it overcomes the primary obstacle of achieving good adhesion in the humid conditions where water could be present between the glue and the target surface.

To investigate the processes involved, the team took orb spider glue, set it on sapphire substrate, then examined it using a combination of interface-sensitive spectroscopy and infrared spectroscopy.

Spider glue is made of three elements: two specialized glycoproteins, a collection of low molecular mass organic and inorganic compounds (LMMCs), and water. The LMMCs are hygroscopic (water-attracting), which keeps the glue soft and tacky to stick.

Singla and her team discovered that these glycoproteins act as primary binding agents to the surface. Glycoprotein-based glues have been identified in several other biological glues, such as fungi, algae, diatoms, sea stars, sticklebacks and English ivy.

But why doesn’t the water present in the spider glue interfere with the adhesive contact the way it does with most synthetic adhesives?

The LMMCs, the team concluded, perform a previously unknown function of sequestering interfacial water, preventing adhesive failure.

Singla and colleagues determined that it is the interaction of glycoproteins and LMMCs that governs the adhesive quality of the glue produced, with the respective proportions varying across species, thus optimizing adhesive strength to match the relative humidity of spider habitat.

“The hygroscopic compounds – known as water-absorbers – in spider glue play a previously unknown role in moving water away from the boundary, thereby preventing failure of spider glue at high humidity,” explained Singla.

The ability of the spider glue to overcome the problem of interfacial water by effectively absorbing it is the key finding of the research, and the one with perhaps the strongest prospect for commercial development.

“Imagine a paint that is guaranteed for life, come rain or shine,” Singla remarked.

All thanks to your friendly neighborhood spider glue.

Here’s a link to and a citation for the paper,

Hygroscopic compounds in spider aggregate glue remove interfacial water to maintain adhesion in humid conditions by Saranshu Singla, Gaurav Amarpuri, Nishad Dhopatkar, Todd A. Blackledge, & Ali Dhinojwala. Nature Communicationsvolume 9, Article number: 1890 (2018) Published 22 May 2018 DOI: https://doi.org/10.1038/s41467-018-04263-z

This paper is open access.

Effective sunscreens from nature

The dream is to find sunscreens that don’t endanger humans or pollute the environment and it seems that Spanish scientists may have taken a step closer to making that dream a reality (from a Jan. 30, 2017 Wiley Publications press release (also on EurekAlert),

The ideal sunscreen should block UVB and UVA radiation while being safe and stable. In the journal Angewandte Chemie, Spanish scientists have introduced a new family of UVA and UVB filters based on natural sunscreen substances found in algae and cyanobacteria. They are highly stable and enhance the effectivity [sic] of commercial sunscreens.

Good news for sunseekers. Commercial [sic] available sunscreen lotions can very effectively protect from dangerous radiation in the ultraviolet [spectrum], but they need to be applied regularly and in high amounts to develop their full potential. One of the most critical issues is the limited stability of the UV filter molecules. Inspired by nature, Diego Sampedro and his colleagues from La Rioja University in Logrono and collaborators from Malaga University and Alcala University, Madrid, Spain, have screened a natural class of UV-protecting [blocking?] molecules for their possible use in skin protection. They adjusted the nature-given motif [sic] to the requirements of chemical synthesis and found that the molecules could indeed boost the sun protection factor of common formulations.

The natural sunscreen molecules are called microsporine-like amino acids (MAAs) and are widespread in the microbial world, most prominently in marine algae and cyanobacteria. MAAs are small molecules derived from amino acids, thermally stable, and they absorb light in the ultraviolet region, protecting the microbial DNA from radiation damage. Thus they are natural sunscreens, which inspired Sampedro and his colleagues to create [a] new class of organic sunscreen compounds.

Theoretical calculations revealed what is chemically needed for a successful design. “We performed a computer calculation of several basic scaffolds [..] to identify the simplest compound that fulfills the requisites for efficient sunscreens”, the authors write. The result of their search was a set of molecules which were readily synthesized, “avoiding the decorating substituents that come from the biosynthetic route.” Thus the small basic molecules can be tuned to give them more favorable properties.

The authors found that the synthesized compounds are characterized by excellent filter capacities in the relevant UV range. In addition they are photostable, much more than, for example, oxybenzene [sic] which is a widely used sunscreen in commercial formulations. They do not react chemically and dissipate radiation as heat (but not to such an extent that the skin temperature would rise as well). And, most importantly, when tested in real formulations, the sun protection factor (SPF) rose by a factor of more than two. Thus they could be promising targets for more stable, more efficient sunscreen lotions. Good news for your next summer vacation.

There’s some unusual phrasing so, I’m guessing that the writer it not accustomed to writing press releases in English. One other comment, it’s oxybenzone that’s often used as an ingredient in commercial sunscreens.

Here’s a link to and a citation for the paper,

Rational Design and Synthesis of Efficient Sunscreens To Boost the Solar Protection Factor by Raúl Losantos, Ignacio Funes-Ardoiz, Dr. José Aguilera, Prof. Enrique Herrera-Ceballos, Dr. Cristina García-Iriepa, Prof. Pedro J. Campos, and Diego Sampedro. Angewandte Chemie International Edition Volume 56, Issue 10, pages 2632–2635, March 1, 2017 DOI: 10.1002/anie.201611627 Version of Record online: 27 JAN 2017

© 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim

This paper is behind a paywall.

I have previously featured work on another natural sunscreen. In that case it was to be derived from English ivy (July 22, 2010 posting); there was an update on the English ivy work in a May 30, 2016 posting but the researcher has moved in a different direction looking at wound healing and armour as possible applications for the research.

Summer camp, science blogging, and algae eyes: Nerd Nite Vancouver (Canada), Jan. 19, 2016

H/t to the Jan. 14-21, 2016 issue (events/timeout p. 10) of the Georgia Straight for pointing to a Jan. 19, 2016 event focused, mostly, on science (from the vancouver.nerdnite.com webpage listing Nerd Nite Vancouver events),

Nerd Nite Vancouver v16

2016 is looking bright for nerds and we’re here to kick it off with some amazing speakers and our favourite beverage – beer! Join us or a pint and a New Year of Nerdery at our local haunt.

Where: The Fox Cabaret

When: Tuesday January 19th, Doors @ 7; Talks @ 7:30

Tickets: as low as $5 online; $9 at the door

#1 The Examination of Bill Murray’s Meatball and the Evolution of Nerds: SummerCamp 101

Jeff Willis

What does Bill Murray, Meatballs and Nerd Evolution have in common? Summer Camp! Buckle your seat belt, open your cranium and roll up your sleeves as we take an introspective and hilarious indepth [sic] journey of relating Bill Murray’s movies to the design and flavor of a meatball wrapped up with the birthing of nerds. How can it be? Nerds, camp and Bill Murray…WTF…what the fun!  Jeff Willis is a giant camp geek and ready to share his thesis of the evolution of a nerd through the lens of summer camp. Geeking about camp at Nerd Nite.

Bio: Since 1991, Jeff (aka Willy), has been developing and leading various camps, expeditions and outdoor programs throughout Canada, Japan, Germany and the Arctic. His love of outdoor education coupled with formal training and years of experience in youth and family work led him to create and work at numerous camps such as Camp Fircom, Camp Suzuki and Fireside Avdentures. He is the quintessential camp director – an energetic leader, creating meaningful experiences for campers and having a load of fun along the way!

#2 Ever Wonder about Science Blogging?

Dr. Raymond Nakamura

In this experimental presentation, we are going to develop an outline for a science blog and a cartoon to go with it. At the beginning, I will exploit the curiosity of the audience to develop a topic. In the middle, I will mine the knowledge and perhaps smart phones of the audience to flesh out an outline. And in the end, I will tap into the imagination and humour of the audience to create a related science cartoon. Come see if this experiment blows up in my face and perhaps learn a little about science communication in the process.

Bio: Raymond Nakamura spends most of his time walking the dog, washing dishes, and helping his daughter with homework. As Head of Raymond’s Brain, he creates blog posts for Science World, co-hosts a podcast for the Nikkei National Museum, writes exhibit text and develops educational programs. He is an editor and cartoonist for the Science Borealis Canadian science blog site, an executive for the Lower Mainland Museum Educators group, and author of a picture book called Peach Girl. Twitter stalk him @raymondsbrain.

#3 The Seas Have Eyes

Dr. Greg Gavelis

Gaze into the algae and the algae gaze back into you. Discover why this bizarre statement is true as we learn about the scientific pursuit of a single cell said to have a human-like eye. In this process, we will explore the controversy and lurid details behind a lost branch of evolutionary theory, and perhaps find an answer to the question “Just how did eyes evolve, anyway?”

Bio: Greg Gavelis works at UBC [University of British Columbia], researching evolutionary cell biology. His findings have been featured in the journals Nature and National Geographic online.  In the past, Greg has accrued further nerd points through his Harry Potter themed wedding, collection of magic cards, inhalers and orthodontia, and was once hospitalized by a squirrel.

Online tickets are still available, as of 1740 PST on Jan. 18, 2016.

Sunscreen based on algae, reef fish mucus, and chitosan

The proposed sunscreen is all natural and would seem to avoid some of the environmental problems associated with other sunscreens (e.g., washing off into the ocean and polluting it). From a July 29, 2015 American Chemical Society (ACS) news release (also on EurekAlert), Note: Links have been removed,

For consumers searching for just the right sunblock this summer, the options can be overwhelming. But scientists are now turning to the natural sunscreen of algae — which is also found in fish slime — to make a novel kind of shield against the sun’s rays that could protect not only people, but also textiles and outdoor materials. …

Existing sunblock lotions typically work by either absorbing ultraviolet rays or physically blocking them. A variety of synthetic and natural compounds can accomplish this. But most commercial options have limited efficiency, pose risks to the environment and human health or are not stable. To address these shortcomings, Vincent Bulone, Susana C. M. Fernandes and colleagues looked to nature for inspiration.

The researchers used algae’s natural sunscreen molecules, which can also be found in reef fish mucus and microorganisms, and combined them with chitosan, a biopolymer from crustacean shells. Testing showed their materials were biocompatible, stood up well in heat and light, and absorbed both ultraviolet A and ultraviolet B radiation with high efficiency.

The authors acknowledge funding from the European Commission Marie Curie Intra-European Fellowship, the KTH Advanced Carbohydrate Materials Consortium (CarboMat), the Swedish Research Council for Environment, Agricultural Sciences and Spatial Planning (FORMAS) and the Basque Government Department of Education.

Here’s a link to and a citation for the paper,

Exploiting Mycosporines as Natural Molecular Sunscreens for the Fabrication of UV-Absorbing Green Material by Susana C. M. Fernandes, Ana Alonso-Varona, Teodoro Palomares, Verónica Zubillaga, Jalel Labidi, and Vincent Bulone.
ACS Appl. Mater. Interfaces, Article ASAP DOI: 10.1021/acsami.5b04064 Publication Date (Web): July 13, 2015
Copyright © 2015 American Chemical Society

This paper is behind a paywall.