Tag Archives: Argonne National Laboratory

Nanoscale imaging of a mouse brain

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Researchers have developed a new brain imaging tool they would like to use as a founding element for a national brain observatory. From a July 30, 2015 news item on Azonano,

A new imaging tool developed by Boston scientists could do for the brain what the telescope did for space exploration.

In the first demonstration of how the technology works, published July 30 in the journal Cell, the researchers look inside the brain of an adult mouse at a scale previously unachievable, generating images at a nanoscale resolution. The inventors’ long-term goal is to make the resource available to the scientific community in the form of a national brain observatory.

A July 30, 2015 Cell Press news release on EurekAlert, which originated the news item, expands on the theme,

“I’m a strong believer in bottom up-science, which is a way of saying that I would prefer to generate a hypothesis from the data and test it,” says senior study author Jeff Lichtman, of Harvard University. “For people who are imagers, being able to see all of these details is wonderful and we’re getting an opportunity to peer into something that has remained somewhat intractable for so long. It’s about time we did this, and it is what people should be doing about things we don’t understand.”

The researchers have begun the process of mining their imaging data by looking first at an area of the brain that receives sensory information from mouse whiskers, which help the animals orient themselves and are even more sensitive than human fingertips. The scientists used a program called VAST, developed by co-author Daniel Berger of Harvard and the Massachusetts Institute of Technology, to assign different colors and piece apart each individual “object” (e.g., neuron, glial cell, blood vessel cell, etc.).

“The complexity of the brain is much more than what we had ever imagined,” says study first author Narayanan “Bobby” Kasthuri, of the Boston University School of Medicine. “We had this clean idea of how there’s a really nice order to how neurons connect with each other, but if you actually look at the material it’s not like that. The connections are so messy that it’s hard to imagine a plan to it, but we checked and there’s clearly a pattern that cannot be explained by randomness.”

The researchers see great potential in the tool’s ability to answer questions about what a neurological disorder actually looks like in the brain, as well as what makes the human brain different from other animals and different between individuals. Who we become is very much a product of the connections our neurons make in response to various life experiences. To be able to compare the physical neuron-to-neuron connections in an infant, a mathematical genius, and someone with schizophrenia would be a leap in our understanding of how our brains shape who we are (or vice versa).

The cost and data storage demands for this type of research are still high, but the researchers expect expenses to drop over time (as has been the case with genome sequencing). To facilitate data sharing, the scientists are now partnering with Argonne National Laboratory with the hopes of creating a national brain laboratory that neuroscientists around the world can access within the next few years.

“It’s bittersweet that there are many scientists who think this is a total waste of time as well as a big investment in money and effort that could be better spent answering questions that are more proximal,” Lichtman says. “As long as data is showing you things that are unexpected, then you’re definitely doing the right thing. And we are certainly far from being out of the surprise element. There’s never a time when we look at this data that we don’t see something that we’ve never seen before.”

Here’s a link to and a citation for the paper,

Saturated Reconstruction of a Volume of Neocortex by Narayanan Kasthuri, Kenneth Jeffrey Hayworth, Daniel Raimund Berger, Richard Lee Schalek, José Angel Conchello, Seymour Knowles-Barley, Dongil Lee, Amelio Vázquez-Reina, Verena Kaynig, Thouis Raymond Jones, Mike Roberts, Josh Lyskowski Morgan, Juan Carlos Tapia, H. Sebastian Seung, William Gray Roncal, Joshua Tzvi Vogelstein, Randal Burns, Daniel Lewis Sussman, Carey Eldin Priebe, Hanspeter Pfister, Jeff William Lichtman. Cell Volume 162, Issue 3, p648–661, 30 July 2015 DOI: http://dx.doi.org/10.1016/j.cell.2015.06.054

This appears to be an open access paper.

Platinum catalysts and their shortcomings

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The problem boils down to the fact that platinum isn’t cheap and so US Dept. of Energy research laboratories are looking for alternatives to or ways of making more efficient use of platinum according to a June 16, 2015 news item on Nanowerk,

Visions of dazzling engagement rings may pop to mind when platinum is mentioned, but a significant share of the nearly half a million pounds of the rare metalExternal link [sic] mined each year ends up in vehicle emission systems and chemical manufacturing plants. The silvery white metal speeds up or enhances reactions, a role scientists call serving as a catalyst, and platinum is fast and efficient performing this function.

Because of its outstanding performance as a catalyst, platinum plays a major role in fuel cells. Inside a fuel cell, tiny platinum particles break apart hydrogen fuel to create electricity. Leftover protons are combined with oxygen ions to create pure water.

Fuel cells could let scientists turn wind into fuel. Right now, electricity generated by wind turbines is not stored. If that energy could be converted into hydrogen to power fuel cells, it would turn a sporadic source into a continuous one.

The problem is the platinum – a scarce and costly metal. Scientists funded by the U.S. Department of Energy’s Office of Science are seeing if something more readily available, such as iron or nickel, could catalyze the reaction.

But, earth-abundant metals cannot simply be used in place of platinum and other rare metals. Each metal works differently at the atomic level. It takes basic research to understand the interactions and use that knowledge to create the right catalysts.

A June 15, 2015 US Department of Energy Office of Science news release, which originated the news item, describes various efforts,

At the Center for Molecular Electrocatalysis, an Energy Frontier Research Center, scientists are gaining new understanding of catalysts based on common metals and how they move protons, the positively charged, oft-ignored counterpart to the electron.

Center Director Morris Bullock and his colleagues showed that protons’ ability to move through the catalyst greatly influences the catalyst’s speed and efficiency. Protons move via relays — clusters of atoms that convey protons to or from the active site of catalysts, where the reaction of interest occurs. The constitution, placement, and number of relays can let a reaction zip along or grind to a halt. Bullock and his colleagues are creating “design guidelines” for building relays.

Further, the team is expanding the guidelines to examine proton movement related to the solutions and surfaces where the catalyst resides. For example, matching the proton-donating abilityExternal link [sic] of a nickel-based catalyst to that of the surrounding liquid, much like matching your clothing choice with the event you’re attending, eases protons’ travels. The benefit? Speed. A coordinated catalyst pumped out 96,000 hydrogen molecules a second — compared to just 27,000 molecules a second without the adjustment.

This and other research at the Energy Frontier Research Center is funded by the DOE Office of Science’s Office of Basic Energy Sciences. The Center is led by Pacific Northwest National Laboratory.

At two other labs, research shows how changing the catalyst’s superstructure, which contains the proton relays and wraps around the active site, can also increase the speed of the reaction. Led by Argonne National Lab’s Vojislav Stamenkovic and Berkeley Lab’s Peidong Yang, researchers created hollow platinum and nickel nanoparticles, a thousand times smaller in diameter than a human hair. The 12-sided particles split oxygen molecules into charged oxygen ions, a reaction that’s needed in fuel cells. The new catalyst is far more active and uses far less platinum than conventional platinum-carbon catalysts.

Building the catalysts begins with tiny structures made of platinum and nickel held in solution. Oxygen from the air dissolves into the liquid and selectively etches away some of the nickel atoms. The result is a hollow framework with a highly active platinum skin over the surface. The open design of the catalyst allows the oxygen to easily access the platinum. The new catalyst has a 36-fold increase in activity compared to traditional platinum–carbon catalysts. Further, the new hollow structure continues to work far longer in operating fuel cells than traditional catalysts.

I think we’re entering the ‘slow’ season newswise so there are likely to be more of these ’roundup’ pieces being circulated in the online nanosciencesphere and, consequently, here. too.

Nanotwinned copper materials with nanovoids are damage-tolerant with regard to radiation

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The research comes out of the Texas A&M University, from a May 29, 2015 news item on Azonano,

Material performance in extreme radiation environments is central to the design of future nuclear reactors. Radiation in metallic materials typically induces significant damage in the form of dislocation loops and continuous void growth, manifested as void swelling. In certain metallic materials with low-to-intermediate stacking fault energy, such as Cu [copper] and austenitic stainless steels, void swelling can be significant and lead to substantial degradation of mechanical properties.

By using in situ heavy ion irradiation in a transmission electron microscope (in collaboration with M.A. Kirk at IVEM facility at Argonne National Lab), Zhang’s [Xinghang Zhang] student, Dr. Youxing Chen, reported a surprising phenomena: during radiation of nanotwinned Cu, preexisting nanovoids disappeared.

A May 28, 2015 Texas A & M University news release, which originated the news item, expands on the theme,

The self-healing capability of Cu arises from the existence of three-dimensional coherent and incoherent twin boundary networks. Such a network enables capture and rapid transportation of radiation induced point defects and their clusters to nanovoids (as evidenced by in situ radiation experiments and molecular dynamics simulations performed in collaboration with Jian Wang at Los Alamos National Laboratory), and thus lead to the mutual elimination of defect clusters and nanovoids.

This study also introduces the concept that deliberate introduction of nanovoids in conjunction with nanotwins may enable unprecedented radiation tolerance in metallic materials. [emphasis mine] The mobile twin boundaries are swift carriers that load and transfer “customers” (defect clusters), and nanovoids are also necessary to accommodate these “customers.” The in situ radiation study also shows that after annihilation of nanovoids, the self-healing capability of nanotwinned Cu is degraded, highlighting the significance of nanovoids. The concept developed from this study, the combination of nanovoids with nanotwin networks, may also stimulate the design of damage tolerant materials in general that are subjected other extreme environments, such as high stress and high pressure impact.

Here’s a link to and a citation for the paper,

Damage-tolerant nanotwinned metals with nanovoids under radiation environments by Y. Chen, K Y. Yu, Y. Liu, S. Shao, H. Wang, M. A. Kirk, J. Wang, & X. Zhang. Nature Communications 6, Article number: 7036 doi:10.1038/ncomms8036 Published 24 April 2015

This paper is open access.

Stress makes quantum dots ‘breathe’

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A March 19, 2015 news item on ScienceDaily describes some new research on quantum dots,

Researchers at the Department of Energy’s SLAC National Accelerator Laboratory watched nanoscale semiconductor crystals expand and shrink in response to powerful pulses of laser light. This ultrafast “breathing” provides new insight about how such tiny structures change shape as they start to melt — information that can help guide researchers in tailoring their use for a range of applications.

In the experiment using SLAC’s Linac Coherent Light Source (LCLS) X-ray laser, a DOE Office of Science User Facility, researchers first exposed the nanocrystals to a burst of laser light, followed closely by an ultrabright X-ray pulse that recorded the resulting structural changes in atomic-scale detail at the onset of melting.

“This is the first time we could measure the details of how these ultrasmall materials react when strained to their limits,” said Aaron Lindenberg, an assistant professor at SLAC and Stanford who led the experiment. The results were published March 12 [2015] in Nature Communications.

A March 18, 2015 SLAC news release, which originated the news item, provides a general description of quantum dots,

The crystals studied at SLAC are known as “quantum dots” because they display unique traits at the nanoscale that defy the classical physics governing their properties at larger scales. The crystals can be tuned by changing their size and shape to emit specific colors of light, for example.

So scientists have worked to incorporate them in solar panels to make them more efficient and in computer displays to improve resolution while consuming less battery power. These materials have also been studied for potential use in batteries and fuel cells and for targeted drug delivery.

Scientists have also discovered that these and other nanomaterials, which may contain just tens or hundreds of atoms, can be far more damage-resistant than larger bits of the same materials because they exhibit a more perfect crystal structure at the tiniest scales. This property could prove useful in battery components, for example, as smaller particles may be able to withstand more charging cycles than larger ones before degrading.

The news release then goes on to describe the latest research showing the dots ‘breathe’ (Note: A link has been removed),

In the LCLS experiment, researchers studied spheres and nanowires made of cadmium sulfide and cadmium selenide that were just 3 to 5 nanometers, or billionths of a meter, across. The nanowires were up to 25 nanometers long. By comparison, amino acids – the building blocks of proteins – are about 1 nanometer in length, and individual atoms are measured in tenths of nanometers.

By examining the nanocrystals from many different angles with X-ray pulses, researchers reconstructed how they change shape when hit with an optical laser pulse. They were surprised to see the spheres and nanowires expand in width by about 1 percent and then quickly contract within femtoseconds, or quadrillionths of a second. They also found that the nanowires don’t expand in length, and showed that the way the crystals respond to strain was coupled to how their structure melts.

In an earlier, separate study, another team of researchers had used LCLS to explore the response of larger gold particles on longer timescales.

“In the future, we want to extend these experiments to more complex and technologically relevant nanostructures, and also to enable X-ray exploration of nanoscale devices while they are operating,” Lindenberg said. “Knowing how materials change under strain can be used together with simulations to design new materials with novel properties.”

Participating researchers were from SLAC, Stanford and two of their joint institutes, the Stanford Institute for Materials and Energy Sciences (SIMES) and Stanford PULSE Institute; University of California, Berkeley; University of Duisburg-Essen in Germany; and Argonne National Laboratory. The work was supported by the DOE Office of Science and the German Research Council.

Here’s a link to and a citation for the paper,

Visualization of nanocrystal breathing modes at extreme strains by Erzsi Szilagyi, Joshua S. Wittenberg, Timothy A. Miller, Katie Lutker, Florian Quirin, Henrik Lemke, Diling Zhu, Matthieu Chollet, Joseph Robinson, Haidan Wen, Klaus Sokolowski-Tinten, & Aaron M. Lindenberg. Nature Communications 6, Article number: 6577 doi:10.1038/ncomms7577 Published 12 March 2015

This paper is behind a paywall but there is a free preview available through ReadCube Access.

Heat, evolution, and the shape of gold nanorods

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A Feb. 23, 2015 news item on Azonano features gold nanorods and their shapeshifting ways when releasing heat,

Researchers at the U.S. Department of Energy’s Argonne National Laboratory have revealed previously unobserved behaviors that show how details of the transfer of heat at the nanoscale cause nanoparticles to change shape in ensembles.

The new findings depict three distinct stages of evolution in groups of gold nanorods, from the initial rod shape to the intermediate shape to a sphere-shaped nanoparticle. The research suggests new rules for the behavior of nanorod ensembles, providing insights into how to increase heat transfer efficiency in a nanoscale system.

A Feb. 18, 2015 Argonne National Laboratory news release by Justin H. S. Breaux, which originated the news item, provides more details about the work,

At the nanoscale, individual gold nanorods have unique electronic, thermal and optical properties. Understanding these properties and managing how collections of these elongated nanoparticles absorb and release this energy as heat will drive new research towards next-generation technologies such as water purification systems, battery materials and cancer research.

A good deal is known about how single nanorods behave—but little is known about how nanorods behave in ensembles of millions. Understanding how the individual behavior of each nanorod, including how its orientation and rate of transition differ from those around it, impacts the collective kinetics of the ensemble and is critical to using nanorods in future technologies.

“We started with a lot of questions,” said Argonne physicist Yuelin Li, “like ‘How much power can the particles sustain before losing functionality? How do individual changes at the nanoscale affect the overall functionality? How much heat is released to the surrounding area?’ Each nanorod is continuously undergoing a change in shape when heated beyond melting temperature, which means a change in the surface area and thus a change in its thermal and hydrodynamic properties.”

The researchers used a laser to heat the nanoparticles and X-rays to analyze their changing shapes. Generally, nanorods transition into nanospheres more quickly when supplied with a higher intensity of laser power. In this case, completely different ensemble behaviors were observed when this intensity increased incrementally. The intensity of the heat applied changes not only the nanoparticles’ shape at various rates but also affects their ability to efficiently absorb and release heat.

“For us, the key was to understand just how efficient the nanorods were at transferring light into heat in many different scenarios,” said nanoscientist Subramanian Sankaranarayanan of Argonne’s Center for Nanoscale Materials. “Then we had to determine the physics behind how heat was transferred and all the different ways these nanorods could transition into nanospheres.”

To observe how the rod makes this transition, researchers first shine a laser pulse at the nanorod suspended in a water solution at Argonne’s Advanced Photon Source. The laser lasts for less than a hundred femtoseconds, nearly one trillion times faster than a blink of the eye. What follows is a series of focused and rapid X-ray bursts using a technique called small angle X-ray scattering. The resulting data is used to determine the average shape of the particle as it changes over time.

In this way, scientists can reconstruct the minute changes occurring in the shape of the nanorod. However, to understand the physics underlying this phenomenon, the researchers needed to look deeper at how individual atoms vibrate and move during the transition. For this, they turned to the field of molecular dynamics using the supercomputing power of the 10-petaflop Mira supercomputer at the Argonne Leadership Computing Facility.

Mira used mathematical equations to pinpoint the individual movements of nearly two million of the nanorods’ atoms in the water. Using factors such as the shape, temperature and rate of change, the researchers built simulations of the nanorod in many different scenarios to see how the structure changes over time.

“In the end,” said Sankaranarayanan, “we discovered the heat transfer rates for shorter but wider nanospheres are lower than for their rod-shaped predecessors. This decrease in heat transfer efficiency at the nanoscale plays a key role in accelerating the transition from rod to sphere when heated beyond the melting temperature.”

Here’s a link to and a citation for the paper,

Femtosecond Laser Pulse Driven Melting in Gold Nanorod Aqueous Colloidal Suspension: Identification of a Transition from Stretched to Exponential Kinetics by Yuelin Li, Zhang Jiang, Xiao-Min Lin, Haidan Wen, Donald A. Walko, Sanket A. Deshmukh, Ram Subbaraman, Subramanian K. R. S. Sankaranarayanan, Stephen K. Gray, & Phay Ho. Scientific Reports 5, Article number: 8146 doi:10.1038/srep08146 Published 30 January 2015

This article is open access.

Kavli nanoscience and microbiomes

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It’s been a while since I’ve mentioned the Kavli Foundation, which is dedicated to “advancing basic science for humanity.” On this occasion,  there’s a Feb. 12, 2015 news item on Nanowerk featuring a Kavli Foundation discussion about nanoscience and microbiomes,

Microbiomes, communities of one-celled organisms, are everywhere in nature. They play important roles in health and agriculture, yet we know surprisingly little about them. Nanoscience might help.

In a far-ranging discussion, two top researchers spoke with the Kavli Foundation about how nanoscience can help us understand and manipulate natural microbiomes.

Microbiomes are communities of bacteria, fungi, protozoa, algae, other one-celled microbes, and viruses that interact with one another in complex ways. These ecosystems are enormously complex. A few grams of soil or marine sediment might contain as many as several hundred thousand different species of microbes.

“There are all these amazing chemistries that microbes perform that can do really wonderful things for humanity, like providing new antibiotics and nutrients for crops. It’s pretty much an unlimited resource of novelty and chemistry—if we can develop improved tools to tap into it,” said Eoin Brodie, a staff scientist in Lawrence Berkeley National Laboratory’s Ecology Department.

In the past, researchers have sought to understand these communities by growing different microbes in cultures and observing their behaviors. Yet only a small fraction of these microorganisms grow in pure cultures.

Nanoscience could provide new ways to unravel these complex ecosystems, according to Jack Gilbert, a principle investigator at Argonne National Laboratory’s Biosciences Division.

…

You can continue reading either on Nanowerk or here on the Kavli website where you’ll find the Kavli Foundation is having a series of conversations about microbiomes, which you may want to check out. This conversation with Brodie and Gilbert seems to be in aid of an upcoming Google Hangout,

Spotlight Live: Thinking Smaller – How Nanoscience Can Help Us Understand Nature’s Many Microbiomes
Wednesday, March 4 – 11:00 am PST

Join us here on March 4 for a live Google Hangout with Eoin Brodie and Jack A. Gilbert. Questions can be submitted by email or via Twitter with the hashtag: #KavliLive. For updates, follow The Kavli Foundation on Twitter and Facebook.

Wilkinson Prize for numerical software: call for 2015 submissions

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The Wilkinson Prize is not meant to recognize a nice, shiny new algorithm, rather it’s meant for the implementation phase and, as anyone who have ever been involved in that phase of a project can tell you, that phase is often sadly neglected. So, bravo for the Wilkinson Prize!

From the March 27, 2014 Numerical Algorithms Group (NAG) news release, here’s a brief history of the Wilkinson Prize,

Every four years the Numerical Algorithms Group (NAG), the National Physical Laboratory (NPL) and Argonne National Laboratory award the prestigious Wilkinson Prize in honour of the outstanding contributions of Dr James Hardy Wilkinson to the field of numerical software. The next Wilkinson Prize will be awarded at the [2015] International Congress on Industrial and Applied Mathematics in Beijing, and will consist of a $3000 cash prize.

NAG, NPL [UK National Physical Laboratory] and Argonne [US Dept. of Energy, Argonne National Laboratory] are committed to encouraging innovative, insightful and original work in numerical software in the same way that Wilkinson inspired many throughout his career. Wilkinson worked on the Automatic Computing Engine (ACE) while at NPL and later authored numerous papers on his speciality, numerical analysis. He also authored many of the routines for matrix computation in the early marks of the NAG Library.

The most recent Wilkinson Prize was awarded in 2011 to Andreas Waechter and Carl D. Laird for IPOPT. Commenting on winning the Wilkinson Prize Carl D. Laird, Associate Professor at the School of Chemical Engineering, Purdue University, said “I love writing software, and working with Andreas on IPOPT was a highlight of my career. From the beginning, our goal was to produce great software that would be used by other researchers and provide solutions to real engineering and scientific problems.

The Wilkinson Prize is one of the few awards that recognises the importance of implementation – that you need more than a great algorithm to produce high-impact numerical software. It rewards the tremendous effort required to ensure reliability, efficiency, and usability of the software.

Here’s more about the prize (list of previous winners, eligibility, etc.), from the Wilkinson Prize for Numerical Software call for submissions webpage,

Previous Prize winners:

  • 2011: Andreas Waechter and Carl D. Laird for Ipopt
  • 2007: Wolfgang Bangerth for deal.II
  • 2003: Jonathan Shewchuch for Triangle
  • 1999: Matteo Frigo and Steven Johnson for FFTW.
  • 1995: Chris Bischof and Alan Carle for ADIFOR 2.0.
  • 1991: Linda Petzold for DASSL.

Eligibility

The prize will be awarded to the authors of an outstanding piece of numerical software, or to individuals who have made an outstanding contribution to an existing piece of numerical software. In the latter case applicants must clearly be able to distinguish their personal contribution and to have that contribution authenticated, and the submission must be written in terms of that personal contribution and not of the software as a whole. To encourage researchers in the earlier stages of their career all applicants must be at most 40 years of age on January 1, 2014.
Rules for Submission

Each entry must contain the following:

Software written in a widely available high-level programming language.
A two-page summary of the main features of the algorithm and software implementation.
A paper describing the algorithm and the software implementation. The paper should give an analysis of the algorithm and indicate any special programming features.
Documentation of the software which describes its purpose and method of use.
Examples of use of the software, including a test program and data.

Submissions

The preferred format for submissions is a gzipped, tar archive or a zip file. Please contact us if you would like to use a different submission mechanism. Submissions should include a README file describing the contents of the archive and scripts for executing the test programs. Submissions can be sent by email to wilkinson-prize@nag.co.uk. Contact this address for further information.

The closing date for submissions is July 1, 2014.

Good luck to you all!

Studying corrosion from the other side

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Corrosion can be beautiful as well as destructive,

Typically, the process of corrosion has been studied from the metal side of the equation - See more at: http://www.anl.gov/articles/core-corrosion#sthash.ZPqFF13I.dpuf. Courtesy of the Argonne National Laboratory

Typically, the process of corrosion has been studied from the metal side of the equation – See more at: http://www.anl.gov/articles/core-corrosion#sthash.ZPqFF13I.dpuf. Courtesy of the Argonne National Laboratory

A Feb. 18, 2014 news item on Nanowerk expands on the theme of corrosion as destruction (Note: Links have been removed),

Anyone who has ever owned a car in a snowy town – or a boat in a salty sea – can tell you just how expensive corrosion can be.

One of the world’s most common and costly chemical reactions, corrosion happens frequently at the boundaries between water and metal surfaces. In the past, the process of corrosion has mostly been studied from the metal side of the equation.

However, in a new study (“Chloride ions induce order-disorder transition at water-oxide interfaces”), scientists at the Center for Nanoscale Materials at the U.S. Department of Energy’s Argonne National Laboratory investigated the problem from the other side, looking at the dynamics of water containing dissolved ions located in the regions near a metal surface.

The Feb. 14, 2014 Argonne National Laboratory news release by Jared Sagoff, which originated the news item, describes how the scientists conducted their research,

A team of researchers led by Argonne materials scientist Subramanian Sankaranarayanan simulated the physical and chemical dynamics of dissolved ions in water at the atomic level as it corrodes metal oxide surfaces. “Water-based solutions behave quite differently near a metal or oxide surface than they do by themselves,” Sankaranarayanan said. “But just how the chemical ions in the water interact with a surface has been an area of intense debate.”

Under low-chlorine conditions, water tends to form two-dimensional ordered layers near solid interfaces because of the influence of its strong hydrogen bonds. However, the researchers found that increasing the proportion of chlorine ions above a certain threshold causes a change in which the solution loses its ordered nature near the surface and begins to act similar to water away from the surface. This transition, in turn, can increase the rate at which materials corrode as well as the freezing temperature of the solution.

This switch between an ordered and a disordered structure near the metal surface happens incredibly quickly, in just fractions of a nanosecond. The speed of the chemical reaction necessitates the use of high-performance computers like Argonne’s Blue/Gene Q supercomputer, Mira.

To further explore these electrochemical oxide interfaces with high-performance computers, Sankaranarayanan and his colleagues from Argonne, Harvard University and the University of Missouri have also been awarded 40 million processor-hours of time on Mira.

“Having the ability to look at these reactions in a more powerful simulation will give us the opportunity to make a more educated guess of the rates of corrosion for different scenarios,” Sankaranarayanan said. Such studies will open up for the first time fundamental studies of corrosion behavior and will allow scientists to tailor materials surfaces to improve the stability and lifetime of materials.

Here’s a link to and a citation for the paper,

Chloride ions induce order-disorder transition at water-oxide interfaces by Sanket Deshmukh, Ganesh Kamath, Shriram Ramanathan, and Subramanian K. R. S. Sankaranarayanan. Phys. Rev. E 88 (6), 062119 (2013) [5 pages]

This article is behind a paywall on both the primary site and the beta site (the American Physical Society is testing a new website for its publications).

‘Giving’ life to liquid crystals

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A Feb. 18, 2014 news item on Azonano highlights a presentation about living liquid crystals that was given at the 58th annual Biophysical Society Meeting in San Francisco on Feb. 17, 2014,

Plop living, swimming bacteria into a novel water-based, nontoxic liquid crystal and a new physics takes over. The dynamic interaction of the bacteria with the liquid crystal creates a novel form of soft matter: living liquid crystal.

The new type of active material, which holds promise for improving the early detection of diseases, was developed by a research collaboration based at Ohio’s Kent State University and Illinois’ Argonne National Laboratory. The team will present their work at the 58th annual Biophysical Society Meeting, held in San Francisco, Feb.15-19 [2014].

ScienceDaily featured the story in a Feb. 17, 2014 news item,

As a biomechanical hybrid, living liquid crystal moves and reshapes itself in response to external stimuli. It also stores energy just as living organisms do to drive its internal motion. And it possesses highly desirable optical properties. In a living liquid crystal system, with the aid of a simple polarizing microscope, you can see with unusual clarity the wake-like trail stimulated by the rotation of bacterial flagella just 24-nanometers thick, about 1/4000th the thickness of an average human hair.

You can also control and guide active movements of the bacteria by manipulating variables such as oxygen availability, temperature or surface alignment, thus introducing a new design concept for creating microfluidic biological sensors. Living liquid crystal provides a medium to amplify tiny reactions that occur at the micro- and nano-scales — where molecules and viruses interact — and to also easily optically detect and analyze these reactions. That suits living liquid crystal to making sensing devices that monitor biological processes such as cancer growth, or infection. Such microfluidic technology is of increasing importance to biomedical sensing as a means of detecting disease in its earliest stages when it is most treatable, and most cost-effectively managed.

Quotes from the lead researcher and presentation details can be found in the Feb. 17, 2013 news item on newswise.com,

“As far as we know, these things have never been done systematically as we did before in experimental physics,” explained Shuang Zhou, a Ph.D. candidate at Ohio’s Kent State University. He collaborated on the project with Oleg Lavrentovich of Kent State, Andrey Sokolov of Argonne National Laboratory, in Illinois, and Igor Aranson of Argonne National Laboratory and Northwestern University, in Evanston, Ill.

“There are many potential applications for this kind of new material, but some of the more immediate are new approaches to biomedical sensing design,” Zhou said. He likens the current investigation to the “first handful of gold scooped out of a just-opened treasure chest. There are many more things to be done.”

The presentation “Living Liquid Crystals” by Shuang Zhou, Andrey Sokolov, Oleg D. Lavrentovich and Igor S. Aranson will be at 1:45 p.m. on Monday, February 17, 2014 in Hall D in San Francisco’s Moscone Convention Center.
ABSTRACT: http://tinyurl.com/pmvbfbp

Here’s the presentation abstract (from the abstractsonline website),

Bio-mechanical hybrids are an emerging class of engineered composite soft materials with the ability to move and reconfigure their structure and properties in response to external stimuli. Similar to their biological counterparts, they can transduce energy stored in the environment to drive systematic movements. This functionality is critical for a variety of applications, from bioinspired micromachines and sensors to self-assembled microrobots. Here, by combining two seemingly incompatible concepts, living swimming bacteria and inanimate but orientationally ordered lyotropic liquid crystal, we conceive a fundamentally new class of matter – living liquid crystals (LLCs). LLCs can be actuated and controlled by the amount of oxygen available to bacteria, by concentration of ingredients or by the temperature. Our studies reveal a wealth of intriguing phenomena, caused primarily by the coupling between the activity-triggered flows and director reorientations. Among these are (a) coupling between the orientation and degree of order of LLC and the bacterial motion, (b) local nematic-isotropic phase transition caused by the bacteria-produced shear flows, (c) periodic stripe instabilities of the director in surface-anchored LLCs, (d) director pattern evolution into an array of disclinations with positive and negative topological charges as the surface anchoring is weakened or when the bacterial activity is enhanced; (e) direct optical visualization and quantitative characterization of microflows generated by the nanometers-thick bacterial flagella by the birefringent LLC medium. Our work suggests an unorthodox design concept of reconfigurable microfluidic chambers for control and manipulation of bacteria. Besides an obvious importance to active matter, our studies can result in valuable biosensing and biomedical applications.

The researchers associated with this work are,

Shuang Zhou, Andrey Sokolov, Oleg D. Lavrentovich, Igor S. Aranson

Their research has been published online by the Proceedings of the National Academy of Sciences (PNAS),

Living liquid crystals by Shuang Zhou, Andrey Sokolov, Oleg D. Lavrentovich, and Igor S. Aranson. PNAS approved December 12, 2013 (received for review November 22, 2013) doi: 10.1073/pnas.1321926111

This paper is behind a paywall but it can be accessed via the tabs seen directly after the publication history (approved … received …).  You will see Abstract, Authors, … and two symbols signifying the formats in which the paper is available.

Still time to vote in Argonne National Laboratory’s Art for Science contest

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Argonne National Laboratory runs an annual contest, Art for Science, where employees and facility users can submit images. I don’t believe there any prizes associated with the contest other than winning the satisfaction of knowing that your image was aesthetically pleasing and an appearance in an Argonne publication and/or in a public display somewhere. This year’s contest according to an Oct. 27, 2013 news item on Nanowerk is still open for voting,

Help Argonne choose the winners of its 2013 Art of Science contest. The annual contest calls for lab employees and users of Argonne’s facilities to submit images and photographs that showcase their research. Some are computer simulations, some are photographs, and some are taken with incredibly powerful transmission electron microscopes that see down to nearly atomic level; all of them show the stunning intersection of beauty and science in Argonne’s world-class labs. Votes will be accepted through Nov. 1, 2013.

This is one of the submissions,

Lead Titanate Domain Terrain The tallest "mountains" in the landscape below are actually only a few nanometers high (about how long your fingernails have grown while reading this). It's made out of lead titanate, which has unique properties and is widely used in sensors and actuators. The image, which has color added, was created using atomic force microscopy. [Argonne National Laboratory]

Lead Titanate Domain Terrain
The tallest “mountains” in the landscape below are actually only a few nanometers high (about how long your fingernails have grown while reading this). It’s made out of lead titanate, which has unique properties and is widely used in sensors and actuators. The image, which has color added, was created using atomic force microscopy. [Argonne National Laboratory]

You can find this image along with many others in the Argonne National Laboratory 2013 Art for Science survey, Winning entries for the 2012 contest were shown in a variety of locations according to Stephanie Yin’s September 11, 2012 article, Finding a palate for the science palette, for Argonne National Laboratory (Note: Links have been removed),

Images from the contest grace the pages of Argonne publications, adorn laboratory buildings and share cutting-edge research with audiences outside the laboratory through traveling exhibits. They have appeared in public-access libraries, including the University of Chicago’s John Crerar Library and the Downers Grove Public Library.

Most recently, 27 Art of Science posters were installed in an exhibit at O’Hare International Airport in Chicago. The O’Hare exhibit, which is now up and will run through early 2013, is located in the hallways connecting Terminals 2 and 3 adjacent to the Rotunda.