Tag Archives: Cell

Café Scientifique Vancouver talk on January 30, 2018 and a couple of February 2018 art/sci events in Toronto

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Vancouver

This could be a first for Café Scientifique Vancouver. From a January 28, 2018 Café Scientifique Vancouver announcement (received via email)

This is a reminder that our next café with biotech entrepreneur Dr.Andrew Tait (TUESDAY, JANUARY 30TH [2018] at 7:30PM) in the back room of YAGGER'S DOWNTOWN (433 W Pender).

COMBINING TRADITIONAL NATURAL MEDICINES WITH SCIENTIFIC RESEARCH: UNVEILING THE POTENTIAL OF THE MANDARIN ORANGE PEEL

The orange peel is something most of us may think of as a throw-away compost item, but it is so much more. Travel back in time 9,000 years to China, where orange peel was found in the first fermented alcoholic beverage, and return to today, where mandarin orange peel remains one of China’s top selling herbs that promotes digestion. Now meet Tait Laboratories Inc., a company that was founded based on one chemistry Ph.D. student’s idea, that mandarin orange peel has the potential to reverse incurable neurodegenerative diseases like multiple sclerosis. You will learn about the company’s journey through a scientific lens, from its early days to the present, having developed a mandarin orange peel product sold across Canada in over 1,000 stores including 400 Rexall pharmacies. You will leave with a basic understanding of how herbal products like the company’s mandarin orange peel-based product are developed and brought to market in Canada, and about the science that is required to substantiate health claims on this and other exciting new botanical products.

Bio:

Dr. Andrew Tait is the founder of Tait Laboratories Inc., a company devoted to developing natural medicines from agricultural bi-products. After a B.Sc. in Biochemistry and M.Sc. in Chemistry from Concordia University (Montreal), he completed a Ph.D. in Chemistry at the
University of British Columbia [UBC].

Inspired by his thesis work on multiple sclerosis, he subsequently identified Traditional Chinese Medicines as having potential to treat a wide range of chronic diseases; he founded the company while finishing his graduate studies.

In 2012, he was invited to Ottawa to be awarded the NSERC [{Canada} Natural Sciences and Engineering Research Council] Innovation Challenge Award, for successfully translating his Ph.D. research to an entrepreneurial venture. In 2014, he was awarded the BC Food Processors Association “Rising Star” award.

Dr. Tait is a regularly invited speaker on the topics of entrepreneurship and the science supporting natural health products; he was keynote speaker in 2012 at the Annual Symposium of the Boucher Institute of Naturopathic Medicine (Vancouver) and in 2016 at the
Functional Foods and Natural Health Products Graduate Research Symposium (Winnipeg).

Supported by the Futurpreneur Canada, the Bank of Development of Canada, the UBC’s Entrepreneurship@UBC program, and the NSERC  and NRC  [{Canada} National Research Council] Industry Research Assistance Program (IRAP), he works with industrial and academic researchers developing safe, affordable, and clinically proven medicines. He successfully launched MS+ Mandarin Skin PlusÒ, a patent-pending digestive product now on shelf in over 1000 pharmacies and health food stores across Canada, including 400 Rexall pharmacies.

Dr. Tait mentors young companies as an Entrepreneur in Residence at both SFU [Simon Fraser University] Coast Capital Savings Venture Connection and also the Health Tech Innovation Hub and he also volunteers his time to mentor students of the Student Biotechnology Network.

Lest it be forgotten, many drugs and therapeutic agents are based on natural remedies; a fact often ignored in the discussion about drugs and natural remedies. In any event, I am surprised this talk is being hosted by Café Scientifique Vancouver which has tended to more ‘traditional’ (i.e., university academic) presentations without any hint of ‘alternative’ or ‘entrepreneurial’ aspects. I wonder if this is the harbinger of new things to come from the Café Scientifique Vancouver community.

Meanwhile, interested parties can find out more about Tait Laboratories on their company website. They are selling one product at this time (from the MS+ [Mandarin Skin Plus] product webpage,

MS+™ (Mandarin Skin Plus) is a revolutionary natural health product that aids with digestion and promotes gastrointestinal health. It is a patent-pending proprietary extract based on dry-aged mandarin orange peel, an ancient Traditional Chinese Medicine. This remedy has been safely used for centuries to relieve bloating, indigestion, diarrhea, nausea, upset stomach, cough with phlegm. Experience ULTIMATE DIGESTIVE RELIEF and top gastrointestinal health for only about a dollar a day!

Directions: take one capsule twice a day, up to six capsules per day. Swallow capsule directly OR dissolve powder in water.
60 vegan capsules for ~ 1 month supply

I would have liked to have seen a list of research papers and discussion of human clinical trials regarding their ‘digestive’ product. Will Tait be discussing his research and results into what seems to be a new direction (i.e., the use of mandarin skin peel-derived therapeutics for neurodegenerative diseases)?

I don’t think I’m going to make it to the talk but should anyone who attends care to answer the question, please feel free to add a comment.

ArtSci Salon in Toronto

2018 is proving to be an active year for the ArtSci Salon folks in Toronto. They’ve just finished hosting a January 24-25, 2018 workshop and January 26, 2018 panel discussion on the gene-editing tool CRISPR/CAS9 (see my January 10, 2018 posting for a description).

Now they’ve announced another workshop and panel discussion on successive nights in February, the topic being: cells. From a January 29, 2018 ArtSci Salon announcement (received via email), Note: The panel discussion is listed first, then the workshop, then the artists’ biographies,

FROM CELL TO CANVAS: CREATIVE EXPLORATIONS OF THE MICROSCOPIC [panel discussion]

From the complex forms of the cell to the colonies created by the microbiota; from the undetectable chemical reactions activated by enzymes and natural processes to the environmental information captured through data visualization, the five local and international artists presenting tonight have developed a range of very diverse practices all inspired by the invisible, the undetectable and the microscopic.

We invite you to an evening of artist talks and discussion on the creative process of exploring the microscopic and using living organisms in art, on its potentials and implication for science and its popular dissemination, as well as on its ethics.

WITH:
Robyn Crouch
Mellissa Fisher
JULIA KROLIK
SHAVON MADDEN
TOSCA TERAN

FRIDAY, FEB 9, 2018
6:00-8:00 PM
THE FIELDS INSTITUTE
222 COLLEGE STREET,
RM 230

[Go to this page for access to registration]

FROM CELL TO CANVAS: CREATIVE EXPLORATIONS OF THE MICROSCOPIC [workshop]

THE EVENT WILL BE FOLLOWED BY A WORKSHOP BY: MELLISSA FISHER, SHAVON MADDEN AND JULIA KROLIK
FEB. 10, 2018
11:00AM-5:00PM
AT HACKLAB,
1266 Queen St West

[Go to this page for access to registration]

Workshop:

Design My Microbiome

Artist Mellissa Fisher invites participants to mould parts of her body in agar to create their own microbial version of her, alongside producing their own microbial portrait with painting techniques.

Cooking with the Invasive

Artist Shavon Madden invites participants to discuss invasive species like garlic mustard and cook invasive species whilst exploring, do species which we define and brand as invasive simply have no benefits?

Intoduction to Biological Staining

Artist & Scientist Julia Krolik invites participants to learn about 3 different types of biological staining and have a chance to try staining procedures.

BIOS:

ROBYN CROUCH
The symbolic imagery that comes through Robyn’s work invites one’s gaze inward to the cellular realms. There, one discovers playful depictions of chemical processes; the unseen lattice upon which our macro­cosmic world is constructed. Technological advancements create windows into this molecular realm, and human consciousness acts as the interface between the seen and the unseen worlds. In her functional ceramic work, the influence of Chinese and Japanese tea ceremony encourages contem­plation and appreciation of a quiet
moment. The viewer-participant can lose their train of thought while meandering through geometry and biota, con­nected by strands of double-helical DNA. A flash of recognition, a momentary mirror.

MELLISSA FISHER
Mellissa Fisher is a British Bio Artist based in Kent. Her practice explores the invisible world on our skin by using living organisms and by creating sculptures made with agar to show the public what the surface of our skin really looks like. She is best known for her work with bacteria and works extensively with collaborators in microbiology and immunology. She has exhibited an installation _ “Microbial Me”_with Professor Mark Clements and Dr Richard Harvey at The Eden Project for their permanent exhibition _“The Invisible You: The Human
Microbiome”._The installation included a living portrait in bacteria of the artists face as well as a time-lapse film of the sculpture growing.

JULIA KROLIK
Julia Krolik is a creative director, entrepreneur, scientist and award-winning artist. Her diverse background enables a rare cross-disciplinary empathy, and she continuously advocates for both art and science through several initiatives. Julia is the founder of Art the Science, a non-profit organization dedicated to facilitating artist residencies in scientific research laboratories to foster Canadian science-art culture and expand scientific knowledge communication to benefit the public. Through her consulting agency Pixels and Plans, Julia works with private and public organizations, helping them with strategy, data visualization and knowledge mobilization, often utilizing creative technology and skills-transfer workshops.

SHAVON MADDEN
Shavon Madden is a Brampton based artist, specializing in sculptural, performance and instillation based work exploring the social injustices inflicted on the environment and its creatures. Her work focuses on challenging social-environmental and political ethics, through the embodied experience and feelings of self. She graduated from the University of Toronto Specializing in Art and Art History, along with studies in Environmental Science and will be on her way to Edinburgh for her MFA. Shavon has had works shown at Shelly Peterson, the Burlington Art Gallery and the Art Gallery of Mississauga, among many others. Website: www.greenheartartistry.com [4]

TOSCA TERAN
Working with metal for over 30+ years, Tosca was introduced to glass as an artistic medium in 2004. Through developing bodies of work incorporating metal + glass Tosca has been awarded scholarships at The Corning Museum of Glass, Pilchuck Glass School and The Penland school of Crafts. Her work has been featured at SOFA New York, Culture Canada,
Metalsmith Magazine, The Toronto Design Exchange, and the Memphis Metal Museum. She has been awarded residencies at Gullkistan, Nes, and the Ayatana Research Program. A long-term guest artist instructor at the Ontario Science Centre, Tosca continues to explore materials, code, BioArt, SciArt and teach Metal + Glass courses out of her studio in Toronto.

It seems that these February events and the two events with Marta de Menezes are part of the FACTT (transdisciplinary and transnational festival of art and science) Toronto, from the FACTT Toronto webpage,

FACTT Toronto – Festival of Art & Science posted in: blog, events

The Arte Institute, in partnership with Cultivamos Cultura and ArtSi Salon, has the pleasure to announce FACTT – Festival of Art & Science in Toronto.

The Festival took place in Lisbon, New York, Mexico, Berlin and will continue in Toronto.
Exhibition: The Cabinet Project/ Art Sci Salon / FACTT

Artists:

Andrew Carnie
Elaine Whittaker
Erich Berger
Joana Ricou
Ken Rinaldo
Laura Beloff and Maria Antonia Gonzalez Valerio
Marta de Menezes and Luís Graça
Pedro Cruz

Dates: Jan 26- feb 15 [2018 {sic}]

Where: Meet us on Jan 26 [2018] in the Lobby of the Physics Department, 255 Huron Street
University of Toronto
When: 4:45 PM

You may want to keep an eye on the ArtSci Salon website although I find their posting schedule a bit erratic. Sometimes, I get email notices for events that aren’t yet listed on their website.

In scientific race US sees China coming up from rear

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Sometime it seems as if scientific research is like a race with everyone competing for first place. As in most sports, there are multiple competitions for various sub-groups but only one important race. The US has held the lead position for decades although always with some anxiety. These days the anxiety is focused on China. A June 15, 2017 news item on ScienceDaily suggests that US dominance is threatened in at least one area of research—the biomedical sector,

American scientific teams still publish significantly more biomedical research discoveries than teams from any other country, a new study shows, and the U.S. still leads the world in research and development expenditures.

But American dominance is slowly shrinking, the analysis finds, as China’s skyrocketing investing on science over the last two decades begins to pay off. Chinese biomedical research teams now rank fourth in the world for total number of new discoveries published in six top-tier journals, and the country spent three-quarters what the U.S. spent on research and development during 2015.

Meanwhile, the analysis shows, scientists from the U.S. and other countries increasingly make discoveries and advancements as part of teams that involve researchers from around the world.

A June 15, 2017 Michigan Medicine University of Michigan news release (also on EurekAlert), which originated the news item, details the research team’s insights,

The last 15 years have ushered in an era of “team science” as research funding in the U.S., Great Britain and other European countries, as well as Canada and Australia, stagnated. The number of authors has also grown over time. For example, in 2000 only two percent of the research papers the new study looked include 21 or more authors — a number that increased to 12.5 percent in 2015.

The new findings, published in JCI Insight by a team of University of Michigan researchers, come at a critical time for the debate over the future of U.S. federal research funding. The study is based on a careful analysis of original research papers published in six top-tier and four mid-tier journals from 2000 to 2015, in addition to data on R&D investment from those same years.

The study builds on other work that has also warned of America’s slipping status in the world of science and medical research, and the resulting impact on the next generation of aspiring scientists.

“It’s time for U.S. policy-makers to reflect and decide whether the year-to-year uncertainty in National Institutes of Health budget and the proposed cuts are in our societal and national best interest,” says Bishr Omary, M.D., Ph.D., senior author of the new data-supported opinion piece and chief scientific officer of Michigan Medicine, U-M’s academic medical center. “If we continue on the path we’re on, it will be harder to maintain our lead and, even more importantly, we could be disenchanting the next generation of bright and passionate biomedical scientists who see a limited future in pursuing a scientist or physician-investigator career.”

The analysis charts South Korea’s entry into the top 10 countries for publications, as well as China’s leap from outside the top 10 in 2000 to fourth place in 2015. They also track the major increases in support for research in South Korea and Singapore since the start of the 21st Century.

Meticulous tracking

First author of the study, U-M informationist Marisa Conte, and Omary co-led a team that looked carefully at the currency of modern science: peer-reviewed basic science and clinical research papers describing new findings, published in journals with long histories of accepting among the world’s most significant discoveries.

They reviewed every issue of six top-tier international journals (JAMA, Lancet, the New England Journal of Medicine, Cell, Nature and Science), and four mid-ranking journals (British Medical Journal, JAMA Internal Medicine, Journal of Cell Science, FASEB Journal), chosen to represent the clinical and basic science aspects of research.

The analysis included only papers that reported new results from basic research experiments, translational studies, clinical trials, metanalyses, and studies of disease outcomes. Author affiliations for corresponding authors and all other authors were recorded by country.

The rise in global cooperation is striking. In 2000, 25 percent of papers in the six top-tier journals were by teams that included researchers from at least two countries. In 2015, that figure was closer to 50 percent. The increasing need for multidisciplinary approaches to make major advances, coupled with the advances of Internet-based collaboration tools, likely have something to do with this, Omary says.

The authors, who also include Santiago Schnell, Ph.D. and Jing Liu, Ph.D., note that part of their group’s interest in doing the study sprang from their hypothesis that a flat NIH budget is likely to have negative consequences but they wanted to gather data to test their hypothesis.

They also observed what appears to be an increasing number of Chinese-born scientists who had trained in the U.S. going back to China after their training, where once most of them would have sought to stay in the U.S. In addition, Singapore has been able to recruit several top notch U.S. and other international scientists due to their marked increase in R&D investments.

The same trends appear to be happening in Great Britain, Australia, Canada, France, Germany and other countries the authors studied – where research investing has stayed consistent when measured as a percentage of the U.S. total over the last 15 years.

The authors note that their study is based on data up to 2015, and that in the current 2017 federal fiscal year, funding for NIH has increased thanks to bipartisan Congressional appropriations. The NIH contributes to most of the federal support for medical and basic biomedical research in the U.S. But discussion of cuts to research funding that hinders many federal agencies is in the air during the current debates for the 2018 budget. Meanwhile, the Chinese R&D spending is projected to surpass the U.S. total by 2022.

“Our analysis, albeit limited to a small number of representative journals, supports the importance of financial investment in research,” Omary says. “I would still strongly encourage any child interested in science to pursue their dream and passion, but I hope that our current and future investment in NIH and other federal research support agencies will rise above any branch of government to help our next generation reach their potential and dreams.”

Here’s a link to and a citation for the paper,

Globalization and changing trends of biomedical research output by Marisa L. Conte, Jing Liu, Santiago Schnell, and M. Bishr Omary. JCI Insight. 2017;2(12):e95206 doi:10.1172/jci.insight.95206 Volume 2, Issue 12 (June 15, 2017)

Copyright © 2017, American Society for Clinical Investigation

This paper is open access.

The notion of a race and looking back to see who, if anyone, is gaining on you reminded me of a local piece of sports lore, the Roger Banister-John Landy ‘Miracle Mile’. In the run up to the 1954 Commonwealth Games held in Vancouver, Canada, two runners were known to have broken the 4-minute mile limit (previously thought to have been impossible) and this meeting was considered an historic meeting. Here’s more from the miraclemile1954.com website,

On August 7, 1954 during the British Empire and Commonwealth Games in Vancouver, B.C., England’s Roger Bannister and Australian John Landy met for the first time in the one mile run at the newly constructed Empire Stadium.

Both men had broken the four minute barrier previously that year. Bannister was the first to break the mark with a time of 3:59.4 on May 6th in Oxford, England. Subsequently, on June 21st in Turku, Finland, John Landy became the new record holder with an official time of 3:58.

The world watched eagerly as both men approached the starting blocks. As 35,000 enthusiastic fans looked on, no one knew what would take place on that historic day.

Promoted as “The Mile of the Century”, it would later be known as the “Miracle Mile”.

With only 90 yards to go in one of the world’s most memorable races, John Landy glanced over his left shoulder to check his opponent’s position. At that instant Bannister streaked by him to victory in a Commonwealth record time of 3:58.8. Landy’s second place finish in 3:59.6 marked the first time the four minute mile had been broken by two men in the same race.

The website hosts an image of the moment memorialized in bronze when Landy looks to his left as Banister passes him on his right,

By Statue: Jack HarmanPhoto: Paul Joseph from vancouver, bc, canada – roger bannister running the four minute mileUploaded by Skeezix1000, CC BY 2.0, https://commons.wikimedia.org/w/index.php?curid=9801121

Getting back to science, I wonder if some day we’ll stop thinking of it as a race where, inevitably, there’s one winner and everyone else loses and find a new metaphor.

Science (magazine) investigates Sci-Hub (a pirate site for scientific papers)

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Sci-Hub, a pirate website for scientific papers, and its progenitor, Alexandra Elbakyan, have generated a couple of articles and an editorial in Science magazine’s latest issue (April 28, 2016?). An April 29, 2016 article by Bob Yirka for phys.org describes one of the articles (Note: Links have been removed),

A correspondent for the Science family of journals has published an investigative piece in Science on Sci-Hub, a website that illegally publishes scholarly literature, i.e. research papers. In his article, John Bohannon describes how he made contact with Alexandra Elbakyan, the founder of what is now the world’s largest site for pirated scholarly articles, data she gave him, and commentary on what was revealed. Bohannon has also published another piece focused exclusively on Elbakyan, describing her as a frustrated science student. Marcia McNutt, Editor-in-Chief of the Science Family also weighs in on her “love-hate” relationship with Sci-Hub, and explains in detail why she believes the site is likely to cause problems for scholarly publishing heading into the future.

An April 28, 2016 American Association for the Advancement of Science (AAAS) news release provides some detail about the number of downloads from the Sci-Hub site,

In this investigative news piece from Science, contributing correspondent John Bohannon dives into data from Sci-Hub, the world’s largest pirate website for scholarly literature. For the first time, basic questions about Sci-Hub’s millions of users can be answered: Where are they and what are they reading? Bohannon’s statistical analysis is based on server log data supplied by Alexandra Elbakyan herself, the neuroscientist who created Sci-Hub in 2011. After establishing contact with her through an encrypted chat system, Bohannon and Elbakyan worked together to create a data set for public release: 28 million Sci-Hub download requests going back to 1 September 2015, including the digital object identifier (DOI) for every paper and the clustered locations of users based on their Internet Protocol address. In his story, Bohannon reveals that Sci-Hub usage is highest in China with 4.4 million download requests over the 6-month period, followed by India and Iran. But Sci-Hub users are not limited to the developing world, he reports; the U.S. is the fifth largest downloader and some of the most intense Sci-Hub activity seems to be happening on US and European university campuses, supporting the claim that many users could be accessing the papers through their libraries, but turn to Sci-Hub for convenience.

Bohanon’s piece appears to be open access. Here’s a link and a citation,

Who’s downloading pirated papers? Everyone by John Bohannon. Science (2016). DOI: 10.1126/science.aaf5664 Published April 28, 2016.

Comments

The analysis of the data is fascinating but I’m not sure why this is being billed as an ‘investigative’ piece. Generally speaking I would expect an investigative piece to unearth new information which has likely been hidden. At the very least, I would expect some juicy inside information (i.e., gossip).

Bohannon certainly had no difficulty getting information (from the April 28, 2016 Science article),

For someone denounced as a criminal by powerful corporations and scholarly societies, Elbakyan was surprisingly forthcoming and transparent. After establishing contact through an encrypted chat system, she worked with me over the course of several weeks to create a data set for public release: every download event over the 6-month period starting 1 September 2015, including the digital object identifier (DOI) for every paper. To protect the privacy of Sci-Hub users, we agreed that she would first aggregate users’ geographic locations to the nearest city using data from Google Maps; no identifying internet protocol (IP) addresses were given to me. (The data set and details on how it was analyzed are freely accessible)

Why would it be surprising that someone who has made a point of freeing scientific research and making it accessible also makes the data from her Sci-Hub site freely available? The action certainly seems consistent with her raison d’être.

Bohannon steers away from making any serious criticisms of the current publishing régimes although he does mention a few bones of contention while laying them to rest, more or less. This is no great surprise since he’s writing for one of the ‘big three’, a journal that could be described as having a vested interest in maintaining the status quo. (For those who are unaware, there are three journal considered the most prestigious or high impact for scientific studies: Nature, Cell, and Science.)

Characterizing Elbakyan as a ‘frustrated’ student in an April 28, 2016 profile by John Bohannon (The frustrated science student behind Sci-Hub) seems a bit dismissive. Sci-Hub may have been borne of frustration but it is an extraordinary accomplishment.

The piece has resulted in at least one very irate librarian, John Dupuis, from an April 29, 2016 posting on his Confessions of a Science Librarian blog,

Overall, the articles are pretty good descriptions of the Sci-Hub phenomenon and relatively even-handed [emphasis mine], especially coming from one of the big society publishers like AAAS.

There was one bit in the main article, Who’s downloading pirated papers? Everyone, that really stuck in my craw. Basically, Sci-Hub — and all that article piracy — is librarians’ fault.

And for all the researchers at Western universities who use Sci-Hub instead, the anonymous publisher lays the blame on librarians for not making their online systems easier to use and educating their researchers. “I don’t think the issue is access—it’s the perception that access is difficult,” he says.

Fortunately it was countered, in the true “give both sides of the story” style of mainstream journalism, by another quote, this time from a librarian.

“I don’t agree,” says Ivy Anderson, the director of collections for the California Digital Library in Oakland, which provides journal access to the 240,000 researchers of the University of California system. The authentication systems that university researchers must use to read subscription journals from off campus, and even sometimes on campus with personal computers, “are there to enforce publisher restrictions,” she says.

But of course, I couldn’t let it go. Anderson’s response is perfectly fine but somehow there just wasn’t enough rage and exasperation in it. So I stewed about it over night and tweeted up a tweetstorm of rage this morning, with the idea that if the rant was well-received I would capture the text as part of a blog post.

…

As you may have guessed by my previous comments, I didn’t find the article quite as even-handed as Dupuis did. As for the offence to librarians, I did notice but it seems in line with the rest of the piece which dismisses, downplays, and offloads a few serious criticisms while ignoring how significant issues (problematic peer review process,  charging exorbitant rates for access to publicly funded research, failure to adequately tag published papers that are under review after serious concerns are raised, failure to respond in a timely fashion when serious concerns are raised about a published paper, positive publication bias, …) have spawned the open access movement and also Sci-Hub. When you consider that governments rely on bibliometric data such as number of papers published and number of papers published in high impact journals (such as one of the ‘big three’), it’s clear there’s a great deal at stake.

Other Sci-Hub pieces here

My last piece about Sci-Hub was a February 25, 2016 posting titled,’ Using copyright to shut down easy access to scientific research‘ featuring some of the discussion around Elsevier and its legal suite against Sci-Hub.