Tag Archives: Chien-Yi Chang

Newcastle University (UK) has a PhD Studentship in Synthetic Biology and Nanotechnology available

Open to UK, European Union, and international students, the studentship deadline for applying is Aug. 18, 2014. Here’s more from the Newcastle University notice on the jobs.ac.uk website (Note: Links have been removed),

PhD Studentship in Synthetic Biology and Nanotechnology – Towards Algorithmic Living Manufacturing (TALIsMAN)

Value, Duration and Start Date of the Award
The Doctoral Training Award is for £20,000 per annum. This award covers fees and a contribution to an annual stipend (living expenses).

Three year PhD

Start date: 14 September 2014

Sponsor
Science Agriculture and Engineering Faculty Doctoral Training Awards

Project Description
The discipline of Synthetic Biology (SB), considers the cell to be a machine that can be built -from parts- in a manner similar to, e.g., electronic circuits, airplanes, etc. SB has sought to co-opt cells for nano-computation and nano-manufacturing purposes. During this scholarship programme of doctoral studies the student will pursue investigations at the interface of computing science (biodesign & biomodeling), chemical sciences (nanoparticle delivery systems), microbiology (bacterial genetic engineering) and nanoscience (DNA origami).

Name of the Supervisors
Professor Natalio Krasnogor (Lead Supervisor), School of Computing Science

Dr David Fulton, School of Chemistry

Dr Chien-Yi Chang, Centre for Bacterial Cell Biology

Person Specification and Eligibility Criteria
You must have an MSc in synthetic biology, microbiology, organic chemistry or computing science. You also should have demonstrable independent research skills, e.g. having completed a successful MSc dissertation or having a publication in a recognised peer reviewed conference or, ideally, journal. The candidate must have substantial laboratory experience and excellent programming and numeracy skills.

This award is available to UK/EU and International candidates. If English is not your first language, you must have IELTS 6.5.

Closing Date for Applications
Applications will be considered until Monday 18 August 2014. However, awards may be made to successful applicants before this date and early application is recommended.

So according to the line above, it’s better to apply sooner rather than later. Good luck!

Don’t kill bacteria, uninvite them

The relentless campaign against bacteria has had some unintended consequences, we’ve made bacteria more resistant and more virulent. Researchers at the University of Nottingham (UK) have taken a different approach from attempting to eradicate or kill; they’ve discovered a class of polymers that ‘uninvites’ bacteria from their surfaces. From the Aug. 13, 2012 news item on ScienceDaily,

Using state-of-the-art technology, scientists at The University of Nottingham have discovered a new class of polymers that are resistant to bacterial attachment. These new materials could lead to a significant reduction in hospital infections and medical device failures.

Medical device associated infections can lead to systemic infections or device failure, costing the NHS £1bn a year. Affecting many commonly used devices including urinary and venous catheters — bacteria form communities known as biofilms. This ‘strength in numbers approach’ protects them against the bodies’ natural defences and antibiotics.

Experts in the Schools of Pharmacy and Molecular Medical Sciences, have shown that when the new materials are applied to the surface of medical devices they repel bacteria and prevent them forming biofilms.

There’s a video of the scientists discussing their work on this new class of polymers,

In order to find this new class of polymers, the scientists had to solve another problem first. From the Aug. 12, 2012 University of Nottingham press release,

Researchers believed there were new materials that could resist bacteria better but they had to find them. This meant screening thousands of different chemistries and testing their reaction to bacteria — a challenge which was beyond conventional materials development or any of our current understanding of the interaction of micro-organisms with surfaces.

The discovery has been made with the help of experts from the Massachusetts Institute of Technology (MIT) — who initially developed the process by which thousands of unique polymers can now be screened simultaneously.

Professor Alexander said: “This is a major scientific breakthrough — we have discovered a new group of structurally related materials that dramatically reduce the attachment of pathogenic bacteria (Pseudomonas aeruginosa, Staphylococcus aureus and Escherichia coli). We could not have found these materials using the current understanding of bacteria-surface interactions. The technology developed with the help of MIT means that hundreds of materials could be screened simultaneously to reveal new structure-property relationships. In total thousands of materials were investigated using this high throughput materials discovery approach leading to the identification of novel materials resisting bacterial attachment. This could not have been achieved using conventional techniques.”

Once they found this new class of polymers, researchers tested for effectiveness (from the Aug. 12, 2012 university press release),

These new materials prevent infection by stopping biofilm formation at the earliest possible stage — when the bacteria first attempt to attach themselves to the device. In the laboratory experts were able to reduce the numbers of bacteria by up to 96.7per cent — compared with a commercially available silver containing catheter — and were effective at resisting bacterial attachment in a mouse implant infection model. By preventing bacterial attachment the body’s own immune system can kill the bacteria before they have time to generate biofilms.

You can read more about this work in the paper the researchers have published (as well as, the news item on ScienceDaily or the University of Nottingham press release for more accessible explanations). You will need to get past a paywall (from the news item on ScienceDaily),

Andrew L Hook, Chien-Yi Chang, Jing Yang, Jeni Luckett, Alan Cockayne, Steve Atkinson, Ying Mei, Roger Bayston, Derek J Irvine, Robert Langer, Daniel G Anderson, Paul Williams, Martyn C Davies, Morgan R Alexander. Combinatorial discovery of polymers resistant to bacterial attachment. Nature Biotechnology, 2012; DOI: 10.1038/nbt.2316

This research reminded me of Sharklet, a product being developed in the US for use in hospitals. Designed to mimic sharkskin, the product discourages bacteria from settling on its surface. It was featured in my Feb. 10, 2011 posting.