Tag Archives: Gonzalo Cosa

McGill University (Canada) researchers build DNA nanotubes block by block

McGill University (Montréal, Québec, Canada) researchers have found a new technique for creating DNA (deoxyribonucleic acid) nanotubes according to a Feb. 24, 2015 news item on Azonano,

Researchers at McGill University have developed a new, low-cost method to build DNA nanotubes block by block – a breakthrough that could help pave the way for scaffolds made from DNA strands to be used in applications such as optical and electronic devices or smart drug-delivery systems.

A Feb. 23, 2015 McGill University news release (also on EurekAlert), which originated the news item, describes current practice and the new technique,

Many researchers, including the McGill team, have previously constructed nanotubes using a method that relies on spontaneous assembly of DNA in solution. The new technique, reported today in Nature Chemistry, promises to yield fewer structural flaws than the spontaneous-assembly method. The building-block approach also makes it possible to better control the size and patterns of the DNA structures, the scientists report.

“Just like a Tetris game, where we manipulate the game pieces with the aim of creating a horizontal line of several blocks, we can now build long nanotubes block by block,” said Amani Hariri, a PhD student in McGill’s Department of Chemistry and lead author of the study. “By using a fluorescence microscope we can further visualize the formation of the tubes at each stage of assembly, as each block is tagged with a fluorescent compound that serves as a beacon. We can then count the number of blocks incorporated in each tube as it is constructed.”

This new technique was made possible by the development in recent years of single-molecule microscopy, which enables scientists to peer into the nano-world by turning the fluorescence of individual molecules on and off. (That groundbreaking work won three U.S.- and German-based scientists the 2014 Nobel Prize in Chemistry.)

Hariri’s research is jointly supervised by chemistry professors Gonzalo Cosa and Hanadi Sleiman, who co-authored the new study. Cosa’s research group specializes in single-molecule fluorescence techniques, while Sleiman’s uses DNA chemistry to design new materials for drug delivery and diagnostic tools.

The custom-built assembly technique developed through this collaboration “gives us the ability to monitor the nanotubes as we’re building them, and see their structure, robustness and morphology,” Cosa said.

“We wanted to control the nanotubes’ lengths and features one-by-one,” said Sleiman, who holds the Canada Research Chair in DNA Nanoscience. The resulting “designer nanotubes,” she adds, promise to be far cheaper to produce on a large scale than those created with so-called DNA origami, another innovative technique for using DNA as a nanoscale construction material.

Here’s a link to and a citation for the paper,

Stepwise growth of surface-grafted DNA nanotubes visualized at the single-molecule level by Amani A. Hariri, Graham D. Hamblin, Yasser Gidi, Hanadi F. Sleiman & Gonzalo Cosa. Nature Chemistry (2015) doi:10.1038/nchem.2184 Published online 23 February 2015

This article is behind a paywall.

HIV testing, nano gold, and Uganda; not so obsolete?; new nanotube manufacturing technique from McGill University

There’s a portable blood-testing machine, designed by US-based PointCare, which can give a print-out detailing a patient’s immune status in 10 minutes. The machine was designed for use in third-world or developing world clinics such as the one in Uganda which is described in this BBC story.

One of the problems doctors and medical staff had with equipment for testing HIV patients’ immune system was that the chemicals used as reagents in the testing process were too easily perishable in the high heat common in a lot of countries. PointCare soved the problem this way (from the BBC article):

Dr Hansen [from PointCare] invented a test that uses chemical reagent that can be freeze-dried and stored in temperatures of over 40C.

CD4 screening tests use antibodies – molecular tags that recognise and latch onto a chemical marker on the surface of the cell. By attaching to the cells, they act as flags distinguishing CD4 cells from other white blood cells.

But these antibodies need to be “labelled”, so they can be detected by a machine.

Traditionally, antibodies are labelled using fluorescent markers, but these fluorescent chemicals perish if they are not kept refrigerated. So they’re useless for a medical team operating from a temporary clinic in the heat of an African summer.

Dr Hansen developed a new label. “We use colloidal gold,” explains Dr Krauledat [community physician]. “It’s true nanotechnology – extremely tiny gold particles attached to the anti-CD4 antibody.”

Do go and read the full story because there’s more to it than I’ve included. Meanwhile I had another look at those lithography stories (SFU’s new maskwriting facilities and RAPID) that I was posting about last week. While the new RAPID technique may make the use of ultra-violet light obsolete, they still haven’t approached the nanoscale. The measurement mentioned is “… 2500 times smaller than a human hair” [more here]. The measurement usually mentioned when discussing the nanoscale  is between 1/100,000 ro 1/60,000 (nobody seems to agree on the exact measurement, you can check here) of the width of a human hair equals 1 nanometre.  Weirdly, the Simon Fraser University (SFU) release notes that the new facilities will be able to create structures “… under 20 nanometres about 10,000 times smaller than the diameter of a human hair” [more here]. If I’m doing the math correctly, wouldn’t that be between 1/50,0000 and 1/30,000 of the human hair? I know it’s a little fussy but once a technical writer, always a technical writer and that kind of detail can make a big difference.

Researchers led by Dr. Hanadi Sleiman and Dr. Gonzalo Cosa at McGill University (Montreal, Canada) have developed a new way to manufacture nanotubes using DNA, in short they are DNA nanotubes. The longer story is here and the shorter story is here.