Tag Archives: Hungary

Poinsettia frogs and a Merry 2023 Christmas

I stumbled across this image in a December 20, 2023 article by Dorothy Woodend for The Tyee where she is the culture editor,

Instead of new material goods this holiday season, I’m searching for something more elusive and ultimately sustaining. And it may help us grow our appreciation for the natural world and its mysteries. Illustrations for The Tyee by Dorothy Woodend.

À propos given the name for this blog and the time of year. Thank you, Ms. Woodend!

I try not to do too many of these stories since the focus for this blog is new and emerging science and technology but I can’t resist including these frog stories (and one dog story). Plus, there may be some tap dancing.

A new (!) fanged frog in Indonesia

This is not the tiny Indonesian fanged frog but it does show you what a fanged frog looks like, from the December 21, 2023 “What Are Fanged Frogs?” posting on the Vajiram and Ravi IAS Study Center website,

Not an Indonesian fanged frog. h/t Vajiram and Ravi IAS Study Center [downloaded from https://vajiramias.com/current-affairs/what-are-fanged-frogs/658416a9f0e178517404afda/]

If you don’t have much time and are interested in the latest fanged frog, check out the December 21, 2023 “What Are Fanged Frogs?” posting as they have relevant information in bullet point form.

On to the specifics about the ‘new’ fanged frog from a December 21, 2023 news item on ScienceDaily,

In general, frogs’ teeth aren’t anything to write home about — they look like pointy little pinpricks lining the upper jaw. But one group of stream-dwelling frogs in Southeast Asia has a strange adaptation: two bony “fangs” jutting out of their lower jawbone. They use these fangs to battle with each other over territory and mates, and sometimes even to hunt tough-shelled prey like giant centipedes and crabs. In a new study, published in the journal PLOS [Public Library of Science] ONE, researchers have described a new species of fanged frog: the smallest one ever discovered.

“This new species is tiny compared to other fanged frogs on the island where it was found, about the size of a quarter,” says Jeff Frederick, a postdoctoral researcher at the Field Museum in Chicago and the study’s lead author, who conducted the research as a doctoral candidate at the University of California, Berkeley.

A December 20, 2023 Field Museum news release (also on EurrekAlert), which originated the news item, adds more detail,

“Many frogs in this genus are giant, weighing up to two pounds. At the large end, this new species weighs about the same as a dime.”

In collaboration with the Bogor Zoology Museum, a team from the McGuire Lab at Berkeley   found the frogs on Sulawesi, a rugged, mountainous island that makes up part of Indonesia. “It’s a giant island with a vast network of mountains, volcanoes, lowland rainforest, and cloud forests up in the mountains. The presence of all these different habitats mean that the magnitude of biodiversity across many plants and animals we find there is unreal – rivaling places like the Amazon,” says Frederick.

While trekking through the jungle, members of the joint US-Indonesia amphibian and reptile research team noticed something unexpected on the leaves of tree saplings and moss-covered boulders: nests of frog eggs.

Frogs are amphibians, and they lay eggs that are encapsulated by jelly, rather than a hard, protective shell. To keep their eggs from drying out, most amphibians lay their eggs in water. To the research team’s surprise, they kept spotting the terrestrial egg masses on leaves and mossy boulders several feet above the ground. Shortly after, they began to see the small, brown frogs themselves.

“Normally when we’re looking for frogs, we’re scanning the margins of stream banks or wading through streams to spot them directly in the water,” Frederick says. “After repeatedly monitoring the nests though, the team started to find attending frogs sitting on leaves hugging their little nests.” This close contact with their eggs allows the frog parents to coat the eggs with compounds that keep them moist and free from bacterial and fungal contamination.

Closer examination of the amphibian parents revealed not only that they were tiny members of the fanged frog family, complete with barely-visible fangs, but that the frogs caring for the clutches of eggs were all male. “Male egg guarding behavior isn’t totally unknown across all frogs, but it’s rather uncommon,” says Frederick.

Frederick and his colleagues hypothesize that the frogs’ unusual reproductive behaviors might also relate to their smaller-than-usual fangs. Some of the frogs’ relatives have bigger fangs, which help them ward off competition for spots along the river to lay their eggs in the water. Since these frogs evolved a way to lay their eggs away from the water, they may have lost the need for such big imposing fangs. (The scientific name for the new species is Limnonectes phyllofolia; phyllofolia means “leaf-nester.”)

“It’s fascinating that on every subsequent expedition to Sulawesi, we’re still discovering new and diverse reproductive modes,” says Frederick. “Our findings also underscore the importance of conserving these very special tropical habitats. Most of the animals that live in places like Sulawesi are quite unique, and habitat destruction is an ever-looming conservation issue for preserving the hyper-diversity of species we find there. Learning about animals like these frogs that are found nowhere else on Earth helps make the case for protecting these valuable ecosystems.”

Here’s a link to and a citation for the paper,

A new species of terrestrially-nesting fanged frog (Anura: Dicroglossidae) from Sulawesi Island, Indonesia by Jeffrey H. Frederick, Djoko T. Iskanda, Awal Riyanto, Amir Hamidy, Sean B. Reilly, Alexander L. Stubbs, Luke M. Bloch, Bryan Bach, Jimmy A. McGuire. PLOS ONE 18(12): e0292598 DOI: https://doi.org/10.1371/journal.pone.0292598 Published: December 20, 2023

This paper is open access and online only.

Fatal attraction to … frog noses?

Bob Yirka in a November 28, 2023 article published on phys.org describes research into some unusual mosquito behaviour, Note: Links have been removed,

A pair of environmental and life scientists, one with the University of Newcastle, in Australia, the other the German Center for Integrative Biodiversity Research, has found that one species of mosquito native to Australia targets only the noses of frogs for feeding. In their paper published in the journal Ethology, John Gould and Jose Valdez describe their three-year study of frogs and Mimomyia elegans, a species of mosquito native to Australia

As part of their study of frogs living in a pond on Kooragang Island, the pair took a lot of photographs of the amphibians in their native environment. It was upon returning to their lab and laying out the photographs that they noticed something unique—any mosquito feeding on a frog’s blood was always atop its nose. This spot, they noted, seemed precarious, as mosquitos are part of the frog diet.

A mosquito perches on the nose of a green and yellow frog perched on a branch.
A species of Australian mosquito, Mimomyia elegans, appears to have a predilection for the nostrils of tree frogs, according to new observations published in the journal Ethology. (John Gould) [downloaded from https://www.cbc.ca/radio/asithappens/mosquitoes-on-frog-noses-1.7058168]

Sheena Goodyear posted a December 13, 2023 article containing an embedded Canadian Broadcasting Corporation (CBC) As It Happens radio programme audio file of an interview with researcher John Gould, Note: A link has been removed,

So why risk landing on the nose of something that wants to eat you, when there are so many other targets walking around full of delicious blood?

“In all of the occasions that we observed, it seems as if the frog didn’t realize that it had a mosquito on top of it…. They were actually quite happy, just sitting idly, while these mosquitoes were feeding on them,” Gould said.

“So it might be that the area between the eyes is a bit of a blind spot for the frogs.”

It’s also something of a sneak attack by the mosquitoes.

“Some of the mosquitoes first initially landed on the backs of the frogs,” Gould said. “They might avoid being eaten by the frogs by landing away from the head and then walking up to the nostrils to feed.

It’s a plausible theory, says amphibian expert Lea Randall, a Calgary Zoo and Wilder Institute ecologist who wasn’t involved in the research. 

“Frogs have amazing vision, and any mosquito that approached from the front would likely end up as a tasty snack for a frog,” she said.

“Landing on the back and making your way undetected to the nostrils is a good strategy.”

And the reward may just be worth the risk. 

“I could also see the nostrils as being a good place to feed as the skin is very thin and highly vascularized, and thus provides a ready source of blood for a hungry mosquito,” Randall said.

Gould admits his friends and loved ones have likely grown weary of hearing him “talking about frogs and nostrils.” But for him, it’s more than a highly specific scientific obsession; it’s about protecting frogs.

His earlier research has suggested that mosquitoes may be a vector for transmitting amphibian chytrid fungus, which is responsible for declines in frog populations worldwide. 

That’s why he had been amassing photos of frogs and mosquitoes in the first place.

“Now that we know where the mosquito is more likely to land, it might give us a better impression about how the infection spreads along the skin of the frog,” he said.

But more work needs to be done. His frog nostril research, while it encompasses three years’ of fieldwork, is a natural history observation, not a laboratory study with controlled variables.

“It would be quite interesting to know whether this particular type of mosquito is transferring the chytrid fungus, and also how the fungus spreads once the mosquito has landed,” Gould said.

A man in a bright yellow jacket and a light strapped to his forehead poses outside at night with a tiny frog perched on his hand.
Gould describes himself as a ‘vampire scientist’ who stays up all night studying nocturnal tree frogs in Australia. ‘They’re so soft and timid a lot of the times,’ he said. ‘They’re quite a special little, little animal.’ (Submitted by John Gould)

Vampire scientist, eh? You can find the embedded 6 mins. 28 secs. audio file in the December 13, 2023 article on the CBC website.

Here’s a link to and a citation for the research paper,

A little on the nose: A mosquito targets the nostrils of tree frogs for a blood meal by John Gould, Jose W. Valdez. Ethology DOI: https://doi.org/10.1111/eth.13424 First published: 21 November 2023

This paper is open access.

Gifted dogs

Caption: Shira, 6 -year-old, female, Border Collie mix, that was rescued at a young age. She lives in New Jersey, and knows the names of 125 toys. Credit Photo: Tres Hanley-Millman

A December 14, 2023 news item on phys.org describes some intriguing research from Hungary,

All dog owners think that their pups are special. Science now has documented that some rare dogs are even more special. They have a talent for learning hundreds of names of dog toys. Due to the extreme rarity of this phenomenon, until recently, very little was known about these dogs, as most of the studies that documented this ability included only a small sample of one or two dogs.

A December 18,2023 Eötvös Loránd University (ELTE) press release (also on EurekAlert but published December 14, 2023), which originated the news item, delves further into the research,

In a previous study, the scientists found that only very few dogs could learn the names of object, mostly dog toys. The researchers wanted to understand this phenomenon better and, so they needed to find more dogs with this ability. But finding dogs with this rare talent was a challenge! For five years, the researchers tirelessly searched across the world for these unique Gifted Word Learner (GWL) dogs. As part of this search, in 2020, they launched a social media campaign and broadcasted their experiments with GWL dogs, in the hope of finding more GWL dogs.

“This was a citizen science project” explains Dr. Claudia Fugazza, team leader. “When a dog owner told us they thought their dog knew toy names, we gave them instructions on how to self-test their dog and asked them to send us the video of the test”. The researchers then held an online meeting with the owners to test the dog’s vocabulary under controlled conditions and, if the dog showed he knew the names of his toys, the researchers asked the owners to fill out a questionnaire. “In the questionnaire, we asked the owners about their dog’s life experience, their own experience in raising and training dogs, and about the process by which the dog came to learn the names of his/her toys” explains Dr. Andrea Sommese, co-author.

VIDEO ABSTRACT ABOUT THE RESEARCH

The researchers found 41 dogs from 9 different countries: the US, the UK, Brazil, Canada, Norway, Netherlands, Spain, Portugal and Hungary. Most of the previous studies on this topic included Border collies. So, while object label learning is very rare even in Border collies, it was not surprising that many of the dogs participating in the current study (56%) belonged to this breed. However, the study documented the ability to learn toy names in a few dogs from non-working breeds, such as two Pomeranians, one Pekingese, one Shih Tzu, a Corgi, a Poodle, and a few mixed breeds.

“Surprisingly, most owners reported that they did not intentionally teach their dogs toy names, but rather that the dogs just seemed to spontaneously pick up the toy names during unstructured play sessions,” says Shany Dror, lead researcher. In addition, the vast majority of owners participating in the study had no professional background in dog training and the researchers found no correlations between the owners’ level of experience in handling and training dogs, and the dogs’ ability to select the correct toys when hearing its names.

“In our previous studies we have shown that GWL dogs learn new object names very fast” explains Dror. “So, it is not surprising that when we conducted the test with the dogs, the average number of toys known by the dogs was 29, but when we published the results, more than 50% of the owners reported that their dogs had already acquired a vocabulary of over 100 toy names”.

“Because GWL dogs are so rare, until now there were only anecdotes about their background” explains Prof. Adam Miklósi, Head of the Ethology Department at ELTE and co-author. “The rare ability to learn object names is the first documented case of talent in a non-human species. The relatively large sample of dogs documented in this study, helps us to identify the common characteristics that are shared among these dogs, and brings us one step closer in the quest of understanding their unique ability”.

This research is part of the Genius Dog Challenge research project which aims to understand the unique talent that Gifted Word Learner dogs have. The researchers encourage dog owners who believe their dogs know multiple toy names, to contact them via the Genius Dog Challenge website.

Here’s a link to and a citation for the research paper,

A citizen science model turns anecdotes into evidence by revealing similar characteristics among Gifted Word Learner dogs by Shany Dror, Ádám Miklósi, Andrea Sommese & Claudia Fugazza. Scientific Reports volume 13, Article number: 21747 (2023) DOI: https://doi.org/10.1038/s41598-023-47864-5 Published: 14 December 2023

This paper is open access.

The End with an origin story NORAD’s Santa Tracker and some tap dancing

At the height of Cold War tensions between the US and Russia, the red phone (to be used only by the US president or a four star genera) rang at the North American Aerospace Defense Command (NORAD). Before the conversation ended, the colonel in charge had driven a child to tears and put in motion the start of a beloved Christmas tradition.

There’s a short version and a long version and if you want all the details read both,

As for the tap dancing, I have three links:

  1. Irish Dancers Face Off Against American Tap Dancers To Deliver EPIC Performance!” is an embedded 8 mins. dance off video (scroll down past a few paragraphs) in Erin Perri’s September 1, 2017 posting for themix.net. And, if you scroll further down to the bottom of Perri’s post, you’ll see an embedded video of Sammy Davis Jr.

In the video …, along with his dad and uncle, Sammy performs at an unbelievable pace. In the last 30 seconds of this routine, Sammy demonstrates more talent than other dancers are able to cram into a lifelong career! You can see these three were breakdancing long before it became a thing in the 1980s and they did it wearing tap shoes!

..

2. “Legendary Nicholas Brothers Dance Routine Was Unrehearsed and Filmed in One Take” embedded at the end of Emma Taggart’s October 4, 2019 posting on mymodernmet.com

3. Finally, there’s “Jill Biden releases extravagant dance video to celebrate Christmas at the White House” with a video file embedded (wait for it to finish loading and scroll down a few paragraphs) in Kate Fowler’s December 15, (?) 2023 article for MSN. It’s a little jazz, a little tap, and a little Christmas joy.

Joyeux Noël!

“The earth is mostly made of cubes,” said Plato in 5th Century BCE. Turns out, he was right!

Theories from mathematics, physics, and geology have been used to demonstrate that the earth’s basic shape is, roughly speaking, a cube. From a July 20, 2020 news item on ScienceDaily,

Plato, the Greek philosopher who lived in the 5th century B.C.E. [before the common era], believed that the universe was made of five types of matter: earth, air, fire, water, and cosmos. Each was described with a particular geometry, a platonic shape. For earth, that shape was the cube.

Science has steadily moved beyond Plato’s conjectures, looking instead to the atom as the building block of the universe. Yet Plato seems to have been onto something, researchers have found.

In a new paper in the Proceedings of the National Academy of Sciences [PNAS], a team from the University of Pennsylvania, Budapest University of Technology and Economics, and University of Debrecen [Hungary] uses math, geology, and physics to demonstrate that the average shape of rocks on Earth is a cube.

A July 17, 2020 University of Pennsylvania news release (also on EurekAlert but dated July 20, 2020), which originated the news item, goes on to describe the work as “mind-blowing,”

“Plato is widely recognized as the first person to develop the concept of an atom [Maybe not, scroll down to find the subhead “Leucippus and Democritus”], the idea that matter is composed of some indivisible component at the smallest scale,” says Douglas Jerolmack, a geophysicist in Penn’s School of Arts & Sciences’ Department of Earth and Environmental Science and the School of Engineering and Applied Science’s Department of Mechanical Engineering and Applied Mechanics. “But that understanding was only conceptual; nothing about our modern understanding of atoms derives from what Plato told us.

“The interesting thing here is that what we find with rock, or earth, is that there is more than a conceptual lineage back to Plato. It turns out that Plato’s conception about the element earth being made up of cubes is, literally, the statistical average model for real earth. And that is just mind-blowing.”

The group’s finding began with geometric models developed by mathematician Gábor Domokos of the Budapest University of Technology and Economics, whose work predicted that natural rocks would fragment into cubic shapes.

“This paper is the result of three years of serious thinking and work, but it comes back to one core idea,” says Domokos. “If you take a three-dimensional polyhedral shape, slice it randomly into two fragments and then slice these fragments again and again, you get a vast number of different polyhedral shapes. But in an average sense, the resulting shape of the fragments is a cube.”

Domokos pulled two Hungarian theoretical physicists into the loop: Ferenc Kun, an expert on fragmentation, and János Török, an expert on statistical and computational models. After discussing the potential of the discovery, Jerolmack says, the Hungarian researchers took their finding to Jerolmack to work together on the geophysical questions; in other words, “How does nature let this happen?”

“When we took this to Doug, he said, ‘This is either a mistake, or this is big,'” Domokos recalls. “We worked backward to understand the physics that results in these shapes.”

Fundamentally, the question they answered is what shapes are created when rocks break into pieces. Remarkably, they found that the core mathematical conjecture unites geological processes not only on Earth but around the solar system as well.

“Fragmentation is this ubiquitous process that is grinding down planetary materials,” Jerolmack says. “The solar system is littered with ice and rocks that are ceaselessly smashing apart. This work gives us a signature of that process that we’ve never seen before.”

Part of this understanding is that the components that break out of a formerly solid object must fit together without any gaps, like a dropped dish on the verge of breaking. As it turns out, the only one of the so-called platonic forms–polyhedra with sides of equal length–that fit together without gaps are cubes.

“One thing we’ve speculated in our group is that, quite possibly Plato looked at a rock outcrop and after processing or analyzing the image subconsciously in his mind, he conjectured that the average shape is something like a cube,” Jerolmack says.

“Plato was very sensitive to geometry,” Domokos adds. According to lore, the phrase “Let no one ignorant of geometry enter” was engraved at the door to Plato’s Academy. “His intuitions, backed by his broad thinking about science, may have led him to this idea about cubes,” says Domokos.

To test whether their mathematical models held true in nature, the team measured a wide variety of rocks, hundreds that they collected and thousands more from previously collected datasets. No matter whether the rocks had naturally weathered from a large outcropping or been dynamited out by humans, the team found a good fit to the cubic average.

However, special rock formations exist that appear to break the cubic “rule.” The Giant’s Causeway in Northern Ireland, with its soaring vertical columns, is one example, formed by the unusual process of cooling basalt. These formations, though rare, are still encompassed by the team’s mathematical conception of fragmentation; they are just explained by out-of-the-ordinary processes at work.

“The world is a messy place,” says Jerolmack. “Nine times out of 10, if a rock gets pulled apart or squeezed or sheared–and usually these forces are happening together–you end up with fragments which are, on average, cubic shapes. It’s only if you have a very special stress condition that you get something else. The earth just doesn’t do this often.”

The researchers also explored fragmentation in two dimensions, or on thin surfaces that function as two-dimensional shapes, with a depth that is significantly smaller than the width and length. There, the fracture patterns are different, though the central concept of splitting polygons and arriving at predictable average shapes still holds.

“It turns out in two dimensions you’re about equally likely to get either a rectangle or a hexagon in nature,” Jerolmack says. “They’re not true hexagons, but they’re the statistical equivalent in a geometric sense. You can think of it like paint cracking; a force is acting to pull the paint apart equally from different sides, creating a hexagonal shape when it cracks.”

In nature, examples of these two-dimensional fracture patterns can be found in ice sheets, drying mud, or even the earth’s crust, the depth of which is far outstripped by its lateral extent, allowing it to function as a de facto two-dimensional material. It was previously known that the earth’s crust fractured in this way, but the group’s observations support the idea that the fragmentation pattern results from plate tectonics.

Identifying these patterns in rock may help in predicting phenomenon such as rock fall hazards or the likelihood and location of fluid flows, such as oil or water, in rocks.

For the researchers, finding what appears to be a fundamental rule of nature emerging from millennia-old insights has been an intense but satisfying experience.

“There are a lot of sand grains, pebbles, and asteroids out there, and all of them evolve by chipping in a universal manner,” says Domokos, who is also co-inventor of the Gömböc, the first known convex shape with the minimal number–just two–of static balance points. Chipping by collisions gradually eliminates balance points, but shapes stop short of becoming a Gömböc; the latter appears as an unattainable end point of this natural process.

The current result shows that the starting point may be a similarly iconic geometric shape: the cube with its 26 balance points. “The fact that pure geometry provides these brackets for a ubiquitous natural process, gives me happiness,” he says.

“When you pick up a rock in nature, it’s not a perfect cube, but each one is a kind of statistical shadow of a cube,” adds Jerolmack. “It calls to mind Plato’s allegory of the cave. He posited an idealized form that was essential for understanding the universe, but all we see are distorted shadows of that perfect form.”

The human capacity for imagination, in this case linking ideas about geometry and mathematics from the 5th Century BCE to modern physics and geology and to the solar system, astounds and astonishes me. As for Jerolmack’s comment that Plato (428/427 or 424/423 – 348/347 BC) was the first to develop the concept of an atom, not everyone agrees.

Leucippus and Democritus

It may not ever be possible to determine who was the first to theorize/philosophize about atoms but there is relatively general agreement that Leucippus (5th cent.BCE) and his successor, Democritus (c. 460 – c. 370 BC) were among the first. Here’s more about Ancient Atomism and its origins from the Stanford Encyclopedia of Philosphy,

Leucippus (5th c. BCE) is the earliest figure whose commitment to atomism is well attested. He is usually credited with inventing atomism. According to a passing remark by the geographer Strabo, Posidonius (1st c. BCE Stoic philosopher) reported that ancient Greek atomism can be traced back to a figure known as Moschus or Mochus of Sidon, who lived at the time of the Trojan wars. This report was given credence in the seventeenth century: the Cambridge Platonist Henry More traced the origins of ancient atomism back, via Pythagoras and Moschus, to Moses. This theologically motivated view does not seem to claim much historical evidence, however.

Leucippus and Democritus are widely regarded as the first atomists [emphasis mine] in the Greek tradition. Little is known about Leucippus, while the ideas of his student Democritus—who is said to have taken over and systematized his teacher’s theory—are known from a large number of reports. These ancient atomists theorized that the two fundamental and oppositely characterized constituents of the natural world are indivisible bodies—atoms—and void. The latter is described simply as nothing, or the negation of body. Atoms are by their nature intrinsically unchangeable; they can only move about in the void and combine into different clusters. Since the atoms are separated by void, they cannot fuse, but must rather bounce off one another when they collide. Because all macroscopic objects are in fact combinations of atoms, everything in the macroscopic world is subject to change, as their constituent atoms shift or move away. Thus, while the atoms themselves persist through all time, everything in the world of our experience is transitory and subject to dissolution.

Although the Greek term atomos is most commonly associated with the philosophical system developed by Leucippus and Democritus, involving solid and impenetrable bodies, Plato’s [emphasis mine] Timaeus presents a different kind of physical theory based on indivisibles. The dialogue elaborates an account of the world wherein the four different basic kinds of matter—earth, air, fire, and water—are regular solids composed from plane figures: isoceles and scalene right-angled triangles. Because the same triangles can form into different regular solids, the theory thus explains how some of the elements can transform into one another, as was widely believed.

As you can see from the excerpt, they are guessing as to the source for atomism and thee are different kinds of atomism and Plato staked his own atomistic territory.

The paper

Here’s a link to and a citation for the paper followed by a statement of significance and the paper’s abstract,

Plato’s cube and the natural geometry of fragmentation by Gábor Domokos, Douglas J. Jerolmack, Ferenc Kun, and János Török. PNAS DOI: https://doi.org/10.1073/pnas.2001037117 First published July 17, 2020

This paper is behind a paywall.

Now for the Significance and the Abstract,

We live on and among the by-products of fragmentation, from nanoparticles to rock falls to glaciers to continents. Understanding and taming fragmentation is central to assessing natural hazards and extracting resources, and even for landing probes safely on other planetary bodies. In this study, we draw inspiration from an unlikely and ancient source: Plato, who proposed that the element Earth is made of cubes because they may be tightly packed together. We demonstrate that this idea is essentially correct: Appropriately averaged properties of most natural 3D fragments reproduce the topological cube. We use mechanical and geometric models to explain the ubiquity of Plato’s cube in fragmentation and to uniquely map distinct fragment patterns to their formative stress conditions.

Plato envisioned Earth’s building blocks as cubes, a shape rarely found in nature. The solar system is littered, however, with distorted polyhedra—shards of rock and ice produced by ubiquitous fragmentation. We apply the theory of convex mosaics to show that the average geometry of natural two-dimensional (2D) fragments, from mud cracks to Earth’s tectonic plates, has two attractors: “Platonic” quadrangles and “Voronoi” hexagons. In three dimensions (3D), the Platonic attractor is dominant: Remarkably, the average shape of natural rock fragments is cuboid. When viewed through the lens of convex mosaics, natural fragments are indeed geometric shadows of Plato’s forms. Simulations show that generic binary breakup drives all mosaics toward the Platonic attractor, explaining the ubiquity of cuboid averages. Deviations from binary fracture produce more exotic patterns that are genetically linked to the formative stress field. We compute the universal pattern generator establishing this link, for 2D and 3D fragmentation.

Fascinating, eh?

Robot radiologists (artificially intelligent doctors)

Mutaz Musa, a physician at New York Presbyterian Hospital/Weill Cornell (Department of Emergency Medicine) and software developer in New York City, has penned an eyeopening opinion piece about artificial intelligence (or robots if you prefer) and the field of radiology. From a June 25, 2018 opinion piece for The Scientist (Note: Links have been removed),

Although artificial intelligence has raised fears of job loss for many, we doctors have thus far enjoyed a smug sense of security. There are signs, however, that the first wave of AI-driven redundancies among doctors is fast approaching. And radiologists seem to be first on the chopping block.

Andrew Ng, founder of online learning platform Coursera and former CTO of “China’s Google,” Baidu, recently announced the development of CheXNet, a convolutional neural net capable of recognizing pneumonia and other thoracic pathologies on chest X-rays better than human radiologists. Earlier this year, a Hungarian group developed a similar system for detecting and classifying features of breast cancer in mammograms. In 2017, Adelaide University researchers published details of a bot capable of matching human radiologist performance in detecting hip fractures. And, of course, Google achieved superhuman proficiency in detecting diabetic retinopathy in fundus photographs, a task outside the scope of most radiologists.

Beyond single, two-dimensional radiographs, a team at Oxford University developed a system for detecting spinal disease from MRI data with a performance equivalent to a human radiologist. Meanwhile, researchers at the University of California, Los Angeles, reported detecting pathology on head CT scans with an error rate more than 20 times lower than a human radiologist.

Although these particular projects are still in the research phase and far from perfect—for instance, often pitting their machines against a limited number of radiologists—the pace of progress alone is telling.

Others have already taken their algorithms out of the lab and into the marketplace. Enlitic, founded by Aussie serial entrepreneur and University of San Francisco researcher Jeremy Howard, is a Bay-Area startup that offers automated X-ray and chest CAT scan interpretation services. Enlitic’s systems putatively can judge the malignancy of nodules up to 50 percent more accurately than a panel of radiologists and identify fractures so small they’d typically be missed by the human eye. One of Enlitic’s largest investors, Capitol Health, owns a network of diagnostic imaging centers throughout Australia, anticipating the broad rollout of this technology. Another Bay-Area startup, Arterys, offers cloud-based medical imaging diagnostics. Arterys’s services extend beyond plain films to cardiac MRIs and CAT scans of the chest and abdomen. And there are many others.

Musa has offered a compelling argument with lots of links to supporting evidence.

[downloaded from https://www.the-scientist.com/news-opinion/opinion–rise-of-the-robot-radiologists-64356]

And evidence keeps mounting, I just stumbled across this June 30, 2018 news item on Xinhuanet.com,

An artificial intelligence (AI) system scored 2:0 against elite human physicians Saturday in two rounds of competitions in diagnosing brain tumors and predicting hematoma expansion in Beijing.

The BioMind AI system, developed by the Artificial Intelligence Research Centre for Neurological Disorders at the Beijing Tiantan Hospital and a research team from the Capital Medical University, made correct diagnoses in 87 percent of 225 cases in about 15 minutes, while a team of 15 senior doctors only achieved 66-percent accuracy.

The AI also gave correct predictions in 83 percent of brain hematoma expansion cases, outperforming the 63-percent accuracy among a group of physicians from renowned hospitals across the country.

The outcomes for human physicians were quite normal and even better than the average accuracy in ordinary hospitals, said Gao Peiyi, head of the radiology department at Tiantan Hospital, a leading institution on neurology and neurosurgery.

To train the AI, developers fed it tens of thousands of images of nervous system-related diseases that the Tiantan Hospital has archived over the past 10 years, making it capable of diagnosing common neurological diseases such as meningioma and glioma with an accuracy rate of over 90 percent, comparable to that of a senior doctor.

All the cases were real and contributed by the hospital, but never used as training material for the AI, according to the organizer.

Wang Yongjun, executive vice president of the Tiantan Hospital, said that he personally did not care very much about who won, because the contest was never intended to pit humans against technology but to help doctors learn and improve [emphasis mine] through interactions with technology.

“I hope through this competition, doctors can experience the power of artificial intelligence. This is especially so for some doctors who are skeptical about artificial intelligence. I hope they can further understand AI and eliminate their fears toward it,” said Wang.

Dr. Lin Yi who participated and lost in the second round, said that she welcomes AI, as it is not a threat but a “friend.” [emphasis mine]

AI will not only reduce the workload but also push doctors to keep learning and improve their skills, said Lin.

Bian Xiuwu, an academician with the Chinese Academy of Science and a member of the competition’s jury, said there has never been an absolute standard correct answer in diagnosing developing diseases, and the AI would only serve as an assistant to doctors in giving preliminary results. [emphasis mine]

Dr. Paul Parizel, former president of the European Society of Radiology and another member of the jury, also agreed that AI will not replace doctors, but will instead function similar to how GPS does for drivers. [emphasis mine]

Dr. Gauden Galea, representative of the World Health Organization in China, said AI is an exciting tool for healthcare but still in the primitive stages.

Based on the size of its population and the huge volume of accessible digital medical data, China has a unique advantage in developing medical AI, according to Galea.

China has introduced a series of plans in developing AI applications in recent years.

In 2017, the State Council issued a development plan on the new generation of Artificial Intelligence and the Ministry of Industry and Information Technology also issued the “Three-Year Action Plan for Promoting the Development of a New Generation of Artificial Intelligence (2018-2020).”

The Action Plan proposed developing medical image-assisted diagnostic systems to support medicine in various fields.

I note the reference to cars and global positioning systems (GPS) and their role as ‘helpers’;, it seems no one at the ‘AI and radiology’ competition has heard of driverless cars. Here’s Musa on those reassuring comments abut how the technology won’t replace experts but rather augment their skills,

To be sure, these services frame themselves as “support products” that “make doctors faster,” rather than replacements that make doctors redundant. This language may reflect a reserved view of the technology, though it likely also represents a marketing strategy keen to avoid threatening or antagonizing incumbents. After all, many of the customers themselves, for now, are radiologists.

Radiology isn’t the only area where experts might find themselves displaced.

Eye experts

It seems inroads have been made by artificial intelligence systems (AI) into the diagnosis of eye diseases. It got the ‘Fast Company’ treatment (exciting new tech, learn all about it) as can be seen further down in this posting. First, here’s a more restrained announcement, from an August 14, 2018 news item on phys.org (Note: A link has been removed),

An artificial intelligence (AI) system, which can recommend the correct referral decision for more than 50 eye diseases, as accurately as experts has been developed by Moorfields Eye Hospital NHS Foundation Trust, DeepMind Health and UCL [University College London].

The breakthrough research, published online by Nature Medicine, describes how machine-learning technology has been successfully trained on thousands of historic de-personalised eye scans to identify features of eye disease and recommend how patients should be referred for care.

Researchers hope the technology could one day transform the way professionals carry out eye tests, allowing them to spot conditions earlier and prioritise patients with the most serious eye diseases before irreversible damage sets in.

An August 13, 2018 UCL press release, which originated the news item, describes the research and the reasons behind it in more detail,

More than 285 million people worldwide live with some form of sight loss, including more than two million people in the UK. Eye diseases remain one of the biggest causes of sight loss, and many can be prevented with early detection and treatment.

Dr Pearse Keane, NIHR Clinician Scientist at the UCL Institute of Ophthalmology and consultant ophthalmologist at Moorfields Eye Hospital NHS Foundation Trust said: “The number of eye scans we’re performing is growing at a pace much faster than human experts are able to interpret them. There is a risk that this may cause delays in the diagnosis and treatment of sight-threatening diseases, which can be devastating for patients.”

“The AI technology we’re developing is designed to prioritise patients who need to be seen and treated urgently by a doctor or eye care professional. If we can diagnose and treat eye conditions early, it gives us the best chance of saving people’s sight. With further research it could lead to greater consistency and quality of care for patients with eye problems in the future.”

The study, launched in 2016, brought together leading NHS eye health professionals and scientists from UCL and the National Institute for Health Research (NIHR) with some of the UK’s top technologists at DeepMind to investigate whether AI technology could help improve the care of patients with sight-threatening diseases, such as age-related macular degeneration and diabetic eye disease.

Using two types of neural network – mathematical systems for identifying patterns in images or data – the AI system quickly learnt to identify 10 features of eye disease from highly complex optical coherence tomography (OCT) scans. The system was then able to recommend a referral decision based on the most urgent conditions detected.

To establish whether the AI system was making correct referrals, clinicians also viewed the same OCT scans and made their own referral decisions. The study concluded that AI was able to make the right referral recommendation more than 94% of the time, matching the performance of expert clinicians.

The AI has been developed with two unique features which maximise its potential use in eye care. Firstly, the system can provide information that helps explain to eye care professionals how it arrives at its recommendations. This information includes visuals of the features of eye disease it has identified on the OCT scan and the level of confidence the system has in its recommendations, in the form of a percentage. This functionality is crucial in helping clinicians scrutinise the technology’s recommendations and check its accuracy before deciding the type of care and treatment a patient receives.

Secondly, the AI system can be easily applied to different types of eye scanner, not just the specific model on which it was trained. This could significantly increase the number of people who benefit from this technology and future-proof it, so it can still be used even as OCT scanners are upgraded or replaced over time.

The next step is for the research to go through clinical trials to explore how this technology might improve patient care in practice, and regulatory approval before it can be used in hospitals and other clinical settings.

If clinical trials are successful in demonstrating that the technology can be used safely and effectively, Moorfields will be able to use an eventual, regulatory-approved product for free, across all 30 of their UK hospitals and community clinics, for an initial period of five years.

The work that has gone into this project will also help accelerate wider NHS research for many years to come. For example, DeepMind has invested significant resources to clean, curate and label Moorfields’ de-identified research dataset to create one of the most advanced eye research databases in the world.

Moorfields owns this database as a non-commercial public asset, which is already forming the basis of nine separate medical research studies. In addition, Moorfields can also use DeepMind’s trained AI model for future non-commercial research efforts, which could help advance medical research even further.

Mustafa Suleyman, Co-founder and Head of Applied AI at DeepMind Health, said: “We set up DeepMind Health because we believe artificial intelligence can help solve some of society’s biggest health challenges, like avoidable sight loss, which affects millions of people across the globe. These incredibly exciting results take us one step closer to that goal and could, in time, transform the diagnosis, treatment and management of patients with sight threatening eye conditions, not just at Moorfields, but around the world.”

Professor Sir Peng Tee Khaw, director of the NIHR Biomedical Research Centre at Moorfields Eye Hospital NHS Foundation Trust and UCL Institute of Ophthalmology said: “The results of this pioneering research with DeepMind are very exciting and demonstrate the potential sight-saving impact AI could have for patients. I am in no doubt that AI has a vital role to play in the future of healthcare, particularly when it comes to training and helping medical professionals so that patients benefit from vital treatment earlier than might previously have been possible. This shows the transformative research than can be carried out in the UK combining world leading industry and NIHR/NHS hospital/university partnerships.”

Matt Hancock, Health and Social Care Secretary, said: “This is hugely exciting and exactly the type of technology which will benefit the NHS in the long term and improve patient care – that’s why we fund over a billion pounds a year in health research as part of our long term plan for the NHS.”

Here’s a link to and a citation for the study,

Clinically applicable deep learning for diagnosis and referral in retinal disease by Jeffrey De Fauw, Joseph R. Ledsam, Bernardino Romera-Paredes, Stanislav Nikolov, Nenad Tomasev, Sam Blackwell, Harry Askham, Xavier Glorot, Brendan O’Donoghue, Daniel Visentin, George van den Driessche, Balaji Lakshminarayanan, Clemens Meyer, Faith Mackinder, Simon Bouton, Kareem Ayoub, Reena Chopra, Dominic King, Alan Karthikesalingam, Cían O. Hughes, Rosalind Raine, Julian Hughes, Dawn A. Sim, Catherine Egan, Adnan Tufail, Hugh Montgomery, Demis Hassabis, Geraint Rees, Trevor Back, Peng T. Khaw, Mustafa Suleyman, Julien Cornebise, Pearse A. Keane, & Olaf Ronneberger. Nature Medicine (2018) DOI: https://doi.org/10.1038/s41591-018-0107-6 Published 13 August 2018

This paper is behind a paywall.

And now, Melissa Locker’s August 15, 2018 article for Fast Company (Note: Links have been removed),

In a paper published in Nature Medicine on Monday, Google’s DeepMind subsidiary, UCL, and researchers at Moorfields Eye Hospital showed off their new AI system. The researchers used deep learning to create algorithm-driven software that can identify common patterns in data culled from dozens of common eye diseases from 3D scans. The result is an AI that can identify more than 50 diseases with incredible accuracy and can then refer patients to a specialist. Even more important, though, is that the AI can explain why a diagnosis was made, indicating which part of the scan prompted the outcome. It’s an important step in both medicine and in making AIs slightly more human

The editor or writer has even highlighted the sentence about the system’s accuracy—not just good but incredible!

I will be publishing something soon [my August 21, 2018 posting] which highlights some of the questions one might want to ask about AI and medicine before diving headfirst into this brave new world of medicine.

Nanowire fingerprint technology

Apparently this technology from France’s Laboratoire d’électronique des technologies de l’information (CEA-Leti) will make fingerprinting more reliable. From a Sept. 5, 2017 news item on Nanowerk,

Leti today announced that the European R&D project known as PiezoMAT has developed a pressure-based fingerprint sensor that enables resolution more than twice as high as currently required by the U.S. Federal Bureau of Investigation (FBI).

The project’s proof of concept demonstrates that a matrix of interconnected piezoelectric zinc-oxide (ZnO) nanowires grown on silicon can reconstruct the smallest features of human fingerprints at 1,000 dots per inch (DPI).

“The pressure-based fingerprint sensor derived from the integration of piezo-electric ZnO nanowires grown on silicon opens the path to ultra-high resolution fingerprint sensors, which will be able to reach resolution much higher than 1,000 DPI,” said Antoine Viana, Leti’s project manager. “This technology holds promise for significant improvement in both security and identification applications.”

A Sept. 5, 2017 Leti press release, which originated the news item, delves further,

The eight-member project team of European companies, universities and research institutes fabricated a demonstrator embedding a silicon chip with 250 pixels, and its associated electronics for signal collection and post-processing. The chip was designed to demonstrate the concept and the major technological achievements, not the maximum potential nanowire integration density. Long-term development will pursue full electronics integration for optimal sensor resolution.

The project also provided valuable experience and know-how in several key areas, such as optimization of seed-layer processing, localized growth of well-oriented ZnO nanowires on silicon substrates, mathematical modeling of complex charge generation, and synthesis of new polymers for encapsulation. The research and deliverables of the project have been presented in scientific journals and at conferences, including Eurosensors 2016 in Budapest.

The 44-month, €2.9 million PiezoMAT (PIEZOelectric nanowire MATrices) research project was funded by the European Commission in the Seventh Framework Program. Its partners include:

  • Leti (Grenoble, France): A leading European center in the field of microelectronics, microtechnology and nanotechnology R&D, Leti is one of the three institutes of the Technological Research Division at CEA, the French Alternative Energies and Atomic Energy Commission. Leti’s activities span basic and applied research up to pilot industrial lines. www.leti-cea.com/cea-tech/leti/english
  • Fraunhofer IAF (Freiburg, Germany): Fraunhofer IAF, one of the leading research facilities worldwide in the field of III-V semiconductors, develops electronic and optical devices based on modern micro- and nanostructures. Fraunhofer IAF’s technologies find applications in areas such as security, energy, communication, health, and mobility. www.iaf.fraunhofer.de/en
  • Centre for Energy Research, Hungarian Academy of Sciences (Budapest, Hungary):  The Institute for Technical Physics and Materials Science, one of the institutes of the Research Centre, conducts interdisciplinary research on complex functional materials and nanometer-scale structures, exploration of physical, chemical, and biological principles, and their exploitation in integrated micro- and nanosystems www.mems.hu, www.energia.mta.hu/en
  • Universität Leipzig (Leipzig, Germany): Germany’s second-oldest university with continuous teaching, established in 1409, hosts about 30,000 students in liberal arts, medicine and natural sciences. One of its scientific profiles is “Complex Matter”, and contributions to PIEZOMAT are in the field of nanostructures and wide gap materials. www.zv.uni-leipzig.de/en/
  • Kaunas University of Technology (Kaunas, Lithuania): One of the largest technical universities in the Baltic States, focusing its R&D activities on novel materials, smart devices, advanced measurement techniques and micro/nano-technologies. The Institute of Mechatronics specializes on multi-physics simulation and dynamic characterization of macro/micro-scale transducers with well-established expertise in the field of piezoelectric devices. http://en.ktu.lt/
  • SPECIFIC POLYMERS (Castries, France): SME with twelve employees and an annual turnover of about 1M€, SPECIFIC POLYMERS acts as an R&D service provider and scale-up producer in the field of functional polymers with high specificity (>1000 polymers in catalogue; >500 customers; >50 countries). www.specificpolymers.fr/
  • Tyndall National Institute (Cork, Ireland): Tyndall National Institute is one of Europe’s leading research centres in Information and Communications Technology (ICT) research and development and the largest facility of its type in Ireland. The Institute employs over 460 researchers, engineers and support staff, with a full-time graduate cohort of 135 students. With a network of 200 industry partners and customers worldwide, Tyndall generates around €30M income each year, 85% from competitively won contracts nationally and internationally. Tyndall is a globally leading Institute in its four core research areas of Photonics, Microsystems, Micro/Nanoelectronics and Theory, Modeling and Design. www.tyndall.ie/
  • OT-Morpho (Paris, France): OT-Morpho is a world leader in digital security & identification technologies with the ambition to empower citizens and consumers alike to interact, pay, connect, commute, travel and even vote in ways that are now possible in a connected world. As our physical and digital, civil and commercial lifestyles converge, OT-Morpho stands precisely at that crossroads to leverage the best in security and identity technologies and offer customized solutions to a wide range of international clients from key industries, including Financial services, Telecom, Identity, Security and IoT. With close to €3bn in revenues and more than 14,000 employees, OT-Morpho is the result of the merger between OT (Oberthur Technologies) and Safran Identity & Security (Morpho) completed in 31 May 2017. Temporarily designated by the name “OT-Morpho”, the new company will unveil its new name in September 2017. For more information, visit www.morpho.com and www.oberthur.com

I have tended to take fingerprint technology for granted but last fall (2016) I stumbled on a report suggesting that forensic sciences, including fingerprinting, was perhaps not as conclusive as one might expect after watching fictional police procedural television programmes. My Sept. 23, 2016 posting features the US President’s Council of Advisors on Science and Technology (PCAST) released a report (‘Forensic Science in Criminal Courts: Ensuring Scientific Validity of Feature-Comparison Methods‘ 174 pp PDF).

International Women’s Day March 8, 2017 and UNESCO/L’Oréal’s For Women in Science (Rising Talents)

Before getting to the science, here’s a little music in honour of March 8, 2017 International Women’s Day,

There is is a Wikipedia entry devoted to Rise Up (Parachute Club song), Note: Links have been removed<

“Rise Up” is a pop song recorded by the Canadian group Parachute Club on their self-titled 1983 album. It was produced and engineered by Daniel Lanois, and written by Parachute Club members Billy Bryans, Lauri Conger, Lorraine Segato and Steve Webster with lyrics contributed by filmmaker Lynne Fernie.

An upbeat call for peace, celebration, and “freedom / to love who we please,” the song was a national hit in Canada, and was hailed as a unique achievement in Canadian pop music:

“ Rarely does one experience a piece of music in white North America where the barrier between participant and observer breaks down. Rise Up rises right up and breaks down the wall.[1] ”

According to Segato, the song was not written with any one individual group in mind, but as a universal anthem of freedom and equality;[2] Fernie described the song’s lyrics as having been inspired in part by West Coast First Nations rituals in which young girls would “rise up” at dawn to adopt their adult names as a rite of passage.[3]

It remains the band’s most famous song, and has been adopted as an activist anthem for causes as diverse as gay rights, feminism, anti-racism and the New Democratic Party.[4] As well, the song’s reggae and soca-influenced rhythms made it the first significant commercial breakthrough for Caribbean music in Canada.

L’Oréal UNESCO For Women in Science

From a March 8, 2017 UNESCO press release (received via email),

Fifteen outstanding young women researchers, selected
among more than 250 candidates in the framework of the 19th edition of
the L’Oréal-UNESCO For Women in Science awards, will receive the
International Rising Talent fellowship during a gala on 21 March at the
hotel Pullman Tour Eiffel de Paris. By recognizing their achievements at
a key moment in their careers, the _For Women in Science programme aims
to help them pursue their research.

Since 1998, the L’Oréal-UNESCO _For Women in Science programme [1]
has highlighted the achievements of outstanding women scientists and
supported promising younger women who are in the early stages of their
scientific careers. Selected among the best national and regional
L’Oréal-UNESCO fellows, the International Rising Talents come from
all regions of the world (Africa and Arab States, Asia-Pacific, Europe,
Latin America and North America).

Together with the five laureates of the 2017 L’Oreal-UNESCO For Women
in Science awards [2], they will participate in a week of events,
training and exchanges that will culminate with the award ceremony on 23
March 2017 at the Mutualité in Paris.

The 2017 International Rising Talent are recognized for their work in
the following five categories:

WATCHING THE BRAIN AT WORK

* DOCTOR LORINA NACI, Canada
Fundamental medicine
In a coma: is the patient conscious or unconscious?     * ASSOCIATE
PROFESSOR MUIREANN IRISH, Australia

Clinical medicine
Recognizing Alzheimer’s before the first signs appear.

ON THE ROAD TO CONCEIVING NEW MEDICAL TREATMENTS

* DOCTOR HYUN LEE, Germany
Biological Sciences
Neurodegenerative diseases: untangling aggregated proteins.
* DOCTOR NAM-KYUNG YU, Republic of Korea
Biological Sciences
Rett syndrome: neuronal cells come under fire
* DOCTOR STEPHANIE FANUCCHI, South Africa
Biological Sciences
Better understanding the immune system.
* DOCTOR JULIA ETULAIN, Argentina
Biological Sciences
Better tissue healing.

Finding potential new sources of drugs

* DOCTOR RYM BEN SALLEM, Tunisia
Biological Sciences
New antibiotics are right under our feet.
* DOCTOR HAB JOANNA SULKOWSKA, Poland
Biological Sciences
Unraveling the secrets of entangled proteins.

GETTING TO THE HEART OF MATTER

* MS NAZEK EL-ATAB, United Arab Emirates
Electrical, Electronic and Computer Engineering
Miniaturizing electronics without losing memory.
* DOCTOR BILGE DEMIRKOZ, Turkey
Physics
Piercing the secrets of cosmic radiation.
* DOCTOR TAMARA ELZEIN, Lebanon
Material Sciences
Trapping radioactivity.
* DOCTOR RAN LONG, China
Chemistry
Unlocking the potential of energy resources with nanochemistry.

EXAMINING THE PAST TO SHED LIGHT ON THE FUTURE – OR VICE VERSA

* DOCTOR FERNANDA WERNECK, Brazil
Biological Sciences
Predicting how animal biodiversity will evolve.
* DOCTOR SAM GILES, United Kingdom
Biological Sciences
Taking another look at the evolution of vertebrates thanks to their
braincases.
* DOCTOR ÁGNES KÓSPÁL, Hungary
Astronomy and Space Sciences
Looking at the birth of distant suns and planets to better understand
the solar system.

Congratulations to all of the winners!

You can find out more about these awards and others on the 2017 L’Oréal-UNESCO For Women in Science Awards webpage or on the For Women In Science website. (Again in honour of the 2017 International Women’s Day, I was the 92758th signer of the For Women in Science Manifesto.)

International Women’s Day origins

Thank you to Wikipedia (Note: Links have been removed),

International Women’s Day (IWD), originally called International Working Women’s Day, is celebrated on March 8 every year.[2] It commemorates the movement for women’s rights.

The earliest Women’s Day observance was held on February 28, 1909, in New York and organized by the Socialist Party of America.[3] On March 8, 1917, in the capital of the Russian Empire, Petrograd, a demonstration of women textile workers began, covering the whole city. This was the beginning of the Russian Revolution.[4] Seven days later, the Emperor of Russia Nicholas II abdicated and the provisional Government granted women the right to vote.[3] March 8 was declared a national holiday in Soviet Russia in 1917. The day was predominantly celebrated by the socialist movement and communist countries until it was adopted in 1975 by the United Nations.

It seems only fitting to bookend this post with another song (Happy International Women’s Day March 8, 2017),

While the lyrics are unabashedly romantic, the video is surprisingly moody with a bit of a ‘stalker vive’ although it does end up with her holding centre stage while singing and bouncing around in time to Walking on Sunshine.

Hypersensitivity to nanomedicine: the CARPA reaction

There is some intriguing research (although I do have a reservation) into some unexpected side effects that nanomedicine may have according to a Feb. 23, 2016 news item on phys.org,

Keywords such as nano-, personalized-, or targeted medicine sound like bright future. What most people do not know, is that nanomedicines can cause severe undesired effects for actually being too big! Those modern medicines easily achieve the size of viruses which the body potentially recognizes as foreign starting to defend itself against —a sometimes severe immune response unfolds.

The CARPA-phenomenon (Complement Activation-Related PseudoAllergy) is a frequent hypersensitivity response to nanomedicine application. Up to 100 patients worldwide suffer from severe reactions, such as cardiac distress, difficulty of breathing, chest and back pain or fainting each day when their blood gets exposed to certain nanoparticles during medical treatment. Every 10 days one patient even dies due to an uncontrollable anaphylactoid reaction.

Apart from being activated in a different way, this pseudoallergy has the same symptoms as a common allergy, bearing a crucial difference:  the reaction is taking place without previous sensitizing exposure to a substance, making it hard to predict, whether a person will react to a specific nanodrug or be safe. Intrigued by this vital challenge, János Szebeni from Semmelweis University, Budapest, has been working with scientific verve on the decipherment and prevention of the CARPA phenomenon for more than 20 years. With his invaluable support De Gruyter´s European Journal of Nanomedicine (EJNM) lately dedicated an elaborate compilation of the most recent scientific advances on CARPA, presented by renowned experts on the subject.

A Feb. 23, 2016 De Gruyter Publishers press release, which originated the news item, provides more detail,

Interestingly it´s pigs that turned out to serve as best model for research on the complex pathomechanism, diagnosis and potential treatment of CARPA. “Pigs´ sensitivity equals that of humans responding most vehemently to reactogenic nanomedicines”, Szebeni states.  In a contribution to EJNM´s compilation on CARPA, Rudolf Urbanics and colleagues show that reactions to specific nanodrugs are even quantitatively reproducible in pigs … . Szebeni: “This is absolutely rare in allergy-research. In these animals the endpoint of the overreaction is reflected in a rise of pulmonary arterial pressure, being as accurate as a Swiss watch”. Pigs can thus be used for drug screening and prediction of the CARPAgenic potential of nanomedicines. This becomes increasingly important with the ever growing interest in modern drugs requiring reliable preclinical safety assays during the translation process from bench to bedside. Results might also help to personalize nanomedicine administration schedules during for example the targeted treatment of cancer. The same holds true for a very recently developed in vitro immunoassay. By simply using a patient´s blood sample, it tests for potential CARPA reactions even before application of specific nanodrugs.

Here’s a link to and a citation for the paper,

Lessons learned from the porcine CARPA model: constant and variable responses to different nanomedicines and administration protocols by Rudolf Urbanics, Péter Bedőcs, János Szebeni. European Journal of Nanomedicine. Volume 7, Issue 3, Pages 219–231, ISSN (Online) 1662-596X, ISSN (Print) 1662-5986, DOI: 10.1515/ejnm-2015-0011, June 2015

This paper appears to be open access.

As for reservations, I’m not sure what occasioned the news release so many months post publication of the paperand it should be noted that János Szebeni seems to be the paper’s lead author and the editor of the European Journal of Nanomedicine.

Blue Brain Project builds a digital piece of brain

Caption: This is a photo of a virtual brain slice. Credit: Makram et al./Cell 2015

Caption: This is a photo of a virtual brain slice. Credit: Makram et al./Cell 2015

Here’s more *about this virtual brain slice* from an Oct. 8, 2015 Cell (magazine) news release on EurekAlert,

If you want to learn how something works, one strategy is to take it apart and put it back together again [also known as reverse engineering]. For 10 years, a global initiative called the Blue Brain Project–hosted at the Ecole Polytechnique Federale de Lausanne (EPFL)–has been attempting to do this digitally with a section of juvenile rat brain. The project presents a first draft of this reconstruction, which contains over 31,000 neurons, 55 layers of cells, and 207 different neuron subtypes, on October 8 [2015] in Cell.

Heroic efforts are currently being made to define all the different types of neurons in the brain, to measure their electrical firing properties, and to map out the circuits that connect them to one another. These painstaking efforts are giving us a glimpse into the building blocks and logic of brain wiring. However, getting a full, high-resolution picture of all the features and activity of the neurons within a brain region and the circuit-level behaviors of these neurons is a major challenge.

Henry Markram and colleagues have taken an engineering approach to this question by digitally reconstructing a slice of the neocortex, an area of the brain that has benefitted from extensive characterization. Using this wealth of data, they built a virtual brain slice representing the different neuron types present in this region and the key features controlling their firing and, most notably, modeling their connectivity, including nearly 40 million synapses and 2,000 connections between each brain cell type.

“The reconstruction required an enormous number of experiments,” says Markram, of the EPFL. “It paves the way for predicting the location, numbers, and even the amount of ion currents flowing through all 40 million synapses.”

Once the reconstruction was complete, the investigators used powerful supercomputers to simulate the behavior of neurons under different conditions. Remarkably, the researchers found that, by slightly adjusting just one parameter, the level of calcium ions, they could produce broader patterns of circuit-level activity that could not be predicted based on features of the individual neurons. For instance, slow synchronous waves of neuronal activity, which have been observed in the brain during sleep, were triggered in their simulations, suggesting that neural circuits may be able to switch into different “states” that could underlie important behaviors.

“An analogy would be a computer processor that can reconfigure to focus on certain tasks,” Markram says. “The experiments suggest the existence of a spectrum of states, so this raises new types of questions, such as ‘what if you’re stuck in the wrong state?'” For instance, Markram suggests that the findings may open up new avenues for explaining how initiating the fight-or-flight response through the adrenocorticotropic hormone yields tunnel vision and aggression.

The Blue Brain Project researchers plan to continue exploring the state-dependent computational theory while improving the model they’ve built. All of the results to date are now freely available to the scientific community at https://bbp.epfl.ch/nmc-portal.

An Oct. 8, 2015 Hebrew University of Jerusalem press release on the Canadian Friends of the Hebrew University of Jerusalem website provides more detail,

Published by the renowned journal Cell, the paper is the result of a massive effort by 82 scientists and engineers at EPFL and at institutions in Israel, Spain, Hungary, USA, China, Sweden, and the UK. It represents the culmination of 20 years of biological experimentation that generated the core dataset, and 10 years of computational science work that developed the algorithms and built the software ecosystem required to digitally reconstruct and simulate the tissue.

The Hebrew University of Jerusalem’s Prof. Idan Segev, a senior author of the research paper, said: “With the Blue Brain Project, we are creating a digital reconstruction of the brain and using supercomputer simulations of its electrical behavior to reveal a variety of brain states. This allows us to examine brain phenomena within a purely digital environment and conduct experiments previously only possible using biological tissue. The insights we gather from these experiments will help us to understand normal and abnormal brain states, and in the future may have the potential to help us develop new avenues for treating brain disorders.”

Segev, a member of the Hebrew University’s Edmond and Lily Safra Center for Brain Sciences and director of the university’s Department of Neurobiology, sees the paper as building on the pioneering work of the Spanish anatomist Ramon y Cajal from more than 100 years ago: “Ramon y Cajal began drawing every type of neuron in the brain by hand. He even drew in arrows to describe how he thought the information was flowing from one neuron to the next. Today, we are doing what Cajal would be doing with the tools of the day: building a digital representation of the neurons and synapses, and simulating the flow of information between neurons on supercomputers. Furthermore, the digitization of the tissue is open to the community and allows the data and the models to be preserved and reused for future generations.”

While a long way from digitizing the whole brain, the study demonstrates that it is feasible to digitally reconstruct and simulate brain tissue, and most importantly, to reveal novel insights into the brain’s functioning. Simulating the emergent electrical behavior of this virtual tissue on supercomputers reproduced a range of previous observations made in experiments on the brain, validating its biological accuracy and providing new insights into the functioning of the neocortex. This is a first step and a significant contribution to Europe’s Human Brain Project, which Henry Markram founded, and where EPFL is the coordinating partner.

Cell has made a video abstract available (it can be found with the Hebrew University of Jerusalem press release)

Here’s a link to and a citation for the paper,

Reconstruction and Simulation of Neocortical Microcircuitry by Henry Markram, Eilif Muller, Srikanth Ramaswamy, Michael W. Reimann, Marwan Abdellah, Carlos Aguado Sanchez, Anastasia Ailamaki, Lidia Alonso-Nanclares, Nicolas Antille, Selim Arsever, Guy Antoine Atenekeng Kahou, Thomas K. Berger, Ahmet Bilgili, Nenad Buncic, Athanassia Chalimourda, Giuseppe Chindemi, Jean-Denis Courcol, Fabien Delalondre, Vincent Delattre, Shaul Druckmann, Raphael Dumusc, James Dynes, Stefan Eilemann, Eyal Gal, Michael Emiel Gevaert, Jean-Pierre Ghobril, Albert Gidon, Joe W. Graham, Anirudh Gupta, Valentin Haenel, Etay Hay, Thomas Heinis, Juan B. Hernando, Michael Hines, Lida Kanari, Daniel Keller, John Kenyon, Georges Khazen, Yihwa Kim, James G. King, Zoltan Kisvarday, Pramod Kumbhar, Sébastien Lasserre, Jean-Vincent Le Bé, Bruno R.C. Magalhães, Angel Merchán-Pérez, Julie Meystre, Benjamin Roy Morrice, Jeffrey Muller, Alberto Muñoz-Céspedes, Shruti Muralidhar, Keerthan Muthurasa, Daniel Nachbaur, Taylor H. Newton, Max Nolte, Aleksandr Ovcharenko, Juan Palacios, Luis Pastor, Rodrigo Perin, Rajnish Ranjan, Imad Riachi, José-Rodrigo Rodríguez, Juan Luis Riquelme, Christian Rössert, Konstantinos Sfyrakis, Ying Shi, Julian C. Shillcock, Gilad Silberberg, Ricardo Silva, Farhan Tauheed, Martin Telefont, Maria Toledo-Rodriguez, Thomas Tränkler, Werner Van Geit, Jafet Villafranca Díaz, Richard Walker, Yun Wang, Stefano M. Zaninetta, Javier DeFelipe, Sean L. Hill, Idan Segev, Felix Schürmann. Cell, Volume 163, Issue 2, p456–492, 8 October 2015 DOI: http://dx.doi.org/10.1016/j.cell.2015.09.029

This paper appears to be open access.

My most substantive description of the Blue Brain Project , previous to this, was in a Jan. 29, 2013 posting featuring the European Union’s (EU) Human Brain project and involvement from countries that are not members.

* I edited a redundant lede (That’s a virtual slice of a rat brain.), moved the second sentence to the lede while adding this:  *about this virtual brain slice* on Oct. 16, 2015 at 0955 hours PST.

PlasCarb: producing graphene and renewable hydrogen from food waster

I have two tidbits about PlasCarb the first being an announcement of its existence and the second an announcement of its recently published research. A Jan. 13, 2015 news item on Nanowerk describes the PlasCarb project (Note: A link has been removed),

The Centre for Process Innovation (CPI) is leading a European collaborative project that aims to transform food waste into a sustainable source of significant economic added value, namely graphene and renewable hydrogen.

The project titled PlasCarb will transform biogas generated by the anaerobic digestion of food waste using an innovative low energy microwave plasma process to split biogas (methane and carbon dioxide) into high value graphitic carbon and renewable hydrogen.

A Jan. 13, 2015 CPI press release, which originated the news item, describes the project and its organization in greater detail,

CPI  as the coordinator of the project is responsible for the technical aspects in the separation of biogas into methane and carbon dioxide, and separating of the graphitic carbon produced from the renewable hydrogen. The infrastructure at CPI allows for the microwave plasma process to be trialled and optimised at pilot production scale, with a future technology roadmap devised for commercial scale manufacturing.

Graphene is one of the most interesting inventions of modern times. Stronger than steel, yet light, the material conducts electricity and heat. It has been used for a wide variety of applications, from strengthening tennis rackets, spray on radiators, to building semiconductors, electric circuits and solar cells.

The sustainable creation of graphene and renewable hydrogen from food waste in provides a sustainable method towards dealing with food waste problem that the European Union faces. It is estimated that 90 million tonnes of food is wasted each year, a figure which could rise to approximately 126 million tonnes by 2020. In the UK alone, food waste equates to a financial loss to business of at least £5 billion per year.

Dr Keith Robson, Director of Formulation and Flexible Manufacturing at CPI said, “PlasCarb will provide an innovative solution to the problems associated with food waste, which is one of the biggest challenges that the European Union faces in the strive towards a low carbon economy.  The project will not only seek to reduce food waste but also use new technological methods to turn it into renewable energy resources which themselves are of economic value, and all within a sustainable manner.”

PlasCarb will utilise quality research and specialist industrial process engineering to optimise the quality and economic value of the Graphene and hydrogen, further enhancing the sustainability of the process life cycle.

Graphitic carbon has been identified as one of Europe’s economically critical raw materials and of strategic performance in the development of future emerging technologies. The global market for graphite, either mined or synthetic is worth over €10 billion per annum. Hydrogen is already used in significant quantities by industry and recognised with great potential as a future transport fuel for a low carbon economy. The ability to produce renewable hydrogen also has added benefits as currently 95% of hydrogen is produced from fossil fuels. Moreover, it is currently projected that increasing demand of raw materials from fossil sources will lead to price volatility, accelerated environmental degradation and rising political tensions over resource access.

Therefore, the latter stages of the project will be dedicated to the market uptake of the PlasCarb process and the output products, through the development of an economically sustainable business strategy, a financial risk assessment of the project results and a flexible financial model that is able to act as a primary screen of economic viability. Based on this, an economic analysis of the process will be determined. Through the development of a decentralised business model for widespread trans-European implementation, the valorisation of food waste will have the potential to be undertaken for the benefit of local economies and employment. More specifically, three interrelated post project exploitation markets have been defined: food waste management, high value graphite and RH2 sales.

PlasCarb is a 3-year collaborative project, co-funded under the European Union’s Seventh Framework Programme (FP7) and will further reinforce Europe’s leading position in environmental technologies and innovation in high value Carbon. The consortium is composed of eight partners led by CPI from five European countries, whose complimentary research and industrial expertise will enable the required results to be successfully delivered. The project partners are; The Centre for Process Innovation (UK), GasPlas AS (NO), CNRS (FR), Fraunhofer IBP (DE), Uvasol Ltd (UK), GAP Waste Management (UK), Geonardo Ltd. (HU), Abalonyx AS (NO).

You can find PlasCarb here.

The second announcement can be found in a PlasCarb Jan. 14, 2015 press release announcing the publication of research on heterostructures of graphene ribbons,

Few materials have received as much attention from the scientific world or have raised so many hopes with a view to their potential deployment in new applications as graphene has. This is largely due to its superlative properties: it is the thinnest material in existence, almost transparent, the strongest, the stiffest and at the same time the most strechable, the best thermal conductor, the one with the highest intrinsic charge carrier mobility, plus many more fascinating features. Specifically, its electronic properties can vary enormously through its confinement inside nanostructured systems, for example. That is why ribbons or rows of graphene with nanometric widths are emerging as tremendously interesting electronic components. On the other hand, due to the great variability of electronic properties upon minimal changes in the structure of these nanoribbons, exact control on an atomic level is an indispensable requirement to make the most of all their potential.

The lithographic techniques used in conventional nanotechnology do not yet have such resolution and precision. In the year 2010, however, a way was found to synthesise nanoribbons with atomic precision by means of the so-called molecular self-assembly. Molecules designed for this purpose are deposited onto a surface in such a way that they react with each other and give rise to perfectly specified graphene nanoribbons by means of a highly reproducible process and without any other external mediation than heating to the required temperature. In 2013 a team of scientists from the University of Berkeley and the Centre for Materials Physics (CFM), a mixed CSIC (Spanish National Research Council) and UPV/EHU (University of the Basque Country) centre, extended this very concept to new molecules that were forming wider graphene nanoribbons and therefore with new electronic properties. This same group has now managed to go a step further by creating, through this self-assembly, heterostructures that blend segments of graphene nanoribbons of two different widths.

The forming of heterostructures with different materials has been a concept widely used in electronic engineering and has enabled huge advances to be made in conventional electronics. “We have now managed for the first time to form heterostructures of graphene nanoribbons modulating their width on a molecular level with atomic precision. What is more, their subsequent characterisation by means of scanning tunnelling microscopy and spectroscopy, complemented with first principles theoretical calculations, has shown that it gives rise to a system with very interesting electronic properties which include, for example, the creation of what are known as quantum wells,” pointed out the scientist Dimas de Oteyza, who has participated in this project. This work, the results of which are being published this very week in the journal Nature Nanotechnology, therefore constitutes a significant success towards the desired deployment of graphene in commercial electronic applications.

Here’s a link to and a citation for the paper,

Molecular bandgap engineering of bottom-up synthesized graphene nanoribbon heterojunctions by Yen-Chia Chen, Ting Cao, Chen Chen, Zahra Pedramrazi, Danny Haberer, Dimas G. de Oteyza, Felix R. Fischer, Steven G. Louie, & Michael F. Crommie. Nature Nanotechnology (2015) doi:10.1038/nnano.2014.307 Published online 12 January 2015

This article is behind a paywall but there is a free preview available via ReadCube access.

Nanopaprika.eu celebrates 4th anniversary

It started as a social networking community for nanoscientists in 2007. From the Nov. 25, 2011 news item on Nanotechnology Now,

“It’s all started accidentally”
– recalls András Paszternák, PhD, founder of the portal. “One cold November morning, I met Professor Erika Kálmán, my PhD supervisor, at the corridor of the Chemical Research Center of Hungarian Academy of Sciences. She offer me to edit an already existing Hungarian nanowebpage. I asked for time to reflect, and in next day I suggested to start a community site, which will be updated with new content by members.” adds the Postdoctoral Fellow from Bar-Ilan University.

The page can be described as a place of constant renewal from the beginning. In 2011 it has become even more attractive with an international virtual poster conference, research teams and members “HOT papers” database.

Today there are many from USA, across Europe to Asia who are using the webpage to find new jobs, awards, or partners to start joint research projects.

The website Paszternák founded is nanopaprika.eu. From Nanopaprika’s About us page,

The heat is on for an online social networking community for nanoscientists. The International Nanoscience Community, TINC, was cooked up by Hungarian chemistry PhD student Andras Paszternak. It now provides a rich menu of communication tools for the international community of scientists working in the growing field of nanoscience and nanotechnology and recently passed the 5100 members mark.
The virtual nano community is fully equipped with all the functions one expects from a modern online networking site: personal chat, a scientific forum, more than 50 thematic groups, including microscopy, nanomedicine, and even a discussion forum on safety and toxicity. TINC is also a media partner for more than 45 nano conferences on different topics in 2009, 2010, 2011 and 2012.

The easiest way to describe nanopaprika would be to say that if the LinkedIn and Nanowerk websites had a child born in Europe, this would be it.