Tag Archives: ICN2

Nondirect relationships between the number of hydrogen bonds in DNA pairs and their relative strengths (three can be less than two)

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Michael Berger’s Oct. 10, 2017 Nanowerk Spotlight article features research from the Institut Català de Nanociència i Nanotecnologia, (Catalan Institute of Nanoscience and Nanotechnology and acronym ICN2) which has nothing to do with recent vote on independence (for more, see this Oct. 23, 2017 article about how countries such as ‘Catalonia’ and others do and don’t gain independence in The Atlantic),

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This is the first report on the electrical characterization of DNA with intrabond resolution.

Specifically, it quantifies electrical forces due to a single hydrogen bond in DNA and provides proof of a non-direct relationship between the number of hydrogen bonds in DNA pairs and the relative strengths of such pairs.

Such understanding of the relative strengths of the forces involved in the specific bonding of DNA as well as its electrical origin provides physical foundations to control mechanisms associated with DNA stability. It could help to develop new methods for the understanding, characterization; and control of relevant events originated at intrabond scales e.g. controlled DNA repair and damage; controlled modification of the expression of the genome; and communications below the single bond limit.

A blackboard representation of the manuscript’s key message: the quantification of the relative strengths between base pairs in DNA due to zipping hydrogen bonds might place on doubt such mechanisms regarding the interpretation of thermodynamic properties of DNA based on the assumption that A/T pairs are weaker than G/C pairs due to the sole difference in the number of hydrogen bonds, 2 and 3 respectively. (Image: Dr. Yamila García-Martínez)

Generally, being able to control DNA stability at the single bond level by means of electromagnetic interactions opens new avenues to induce modifications of the replication and transcription processes of DNA by means of noncontact methods.

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Going forward, the researchers will study the effects of external electromagnetic fields on DNA at the level of single bond events. This will have not only an enormous interest in the medical field but also in nanotechnology where it would open the door to non-contact atomic manipulation of DNA – the analogue to the CRISPR gene editing method [emphasis mine] but using electromagnetic fields to drive changes in DNA.

Interesting stuff, eh?

Here’s a link to and a citation for the paper,

Unveiled electric profiles within hydrogen bonds suggest DNA base pairs with similar bond strengths by Y. B. Ruiz-Blanco, Y. Almeida, C. M. Sotomayor-Torres, Y. García. PLOS [Public Library of Science] https://doi.org/10.1371/journal.pone.0185638 Published: October 5, 2017

This paper is open access.

Developing cortical implants for future speech neural prostheses

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I’m guessing that graphene will feature in these proposed cortical implants since the project leader is a member of the Graphene Flagship’s Biomedical Technologies Work Package. (For those who don’t know, the Graphene Flagship is one of two major funding initiatives each receiving funding of 1B Euros over 10 years from the European Commission as part of their FET [Future and Emerging Technologies)] Initiative.)  A Jan. 12, 2017 news item on Nanowerk announces the new project (Note: A link has been removed),

BrainCom is a FET Proactive project, funded by the European Commission with 8.35M€ [8.3 million Euros] for the next 5 years, holding its Kick-off meeting on January 12-13 at ICN2 (Catalan Institute of Nanoscience and Nanotechnology) and the UAB [ Universitat Autònoma de Barcelona]. This project, coordinated by ICREA [Catalan Institution for Research and Advanced Studies] Research Prof. Jose A. Garrido from ICN2, will permit significant advances in understanding of cortical speech networks and the development of speech rehabilitation solutions using innovative brain-computer interfaces.

A Jan. 12, 2017 ICN2 press release, which originated the news item expands on the theme (it is a bit repetitive),

More than 5 million people worldwide suffer annually from aphasia, an extremely invalidating condition in which patients lose the ability to comprehend and formulate language after brain damage or in the course of neurodegenerative disorders. Brain-computer interfaces (BCIs), enabled by forefront technologies and materials, are a promising approach to treat patients with aphasia. The principle of BCIs is to collect neural activity at its source and decode it by means of electrodes implanted directly in the brain. However, neurorehabilitation of higher cognitive functions such as language raises serious issues. The current challenge is to design neural implants that cover sufficiently large areas of the brain to allow for reliable decoding of detailed neuronal activity distributed in various brain regions that are key for language processing.

BrainCom is a FET Proactive project funded by the European Commission with 8.35M€ for the next 5 years. This interdisciplinary initiative involves 10 partners including technologists, engineers, biologists, clinicians, and ethics experts. They aim to develop a new generation of neuroprosthetic cortical devices enabling large-scale recordings and stimulation of cortical activity to study high level cognitive functions. Ultimately, the BraimCom project will seed a novel line of knowledge and technologies aimed at developing the future generation of speech neural prostheses. It will cover different levels of the value chain: from technology and engineering to basic and language neuroscience, and from preclinical research in animals to clinical studies in humans.

This recently funded project is coordinated by ICREA Prof. Jose A. Garrido, Group Leader of the Advanced Electronic Materials and Devices Group at the Institut Català de Nanociència i Nanotecnologia (Catalan Institute of Nanoscience and Nanotechnology – ICN2) and deputy leader of the Biomedical Technologies Work Package presented last year in Barcelona by the Graphene Flagship. The BrainCom Kick-Off meeting is held on January 12-13 at ICN2 and the Universitat Autònoma de Barcelona (UAB).

Recent developments show that it is possible to record cortical signals from a small region of the motor cortex and decode them to allow tetraplegic [also known as, quadriplegic] people to activate a robotic arm to perform everyday life actions. Brain-computer interfaces have also been successfully used to help tetraplegic patients unable to speak to communicate their thoughts by selecting letters on a computer screen using non-invasive electroencephalographic (EEG) recordings. The performance of such technologies can be dramatically increased using more detailed cortical neural information.

BrainCom project proposes a radically new electrocorticography technology taking advantage of unique mechanical and electrical properties of novel nanomaterials such as graphene, 2D materials and organic semiconductors.  The consortium members will fabricate ultra-flexible cortical and intracortical implants, which will be placed right on the surface of the brain, enabling high density recording and stimulation sites over a large area. This approach will allow the parallel stimulation and decoding of cortical activity with unprecedented spatial and temporal resolution.

These technologies will help to advance the basic understanding of cortical speech networks and to develop rehabilitation solutions to restore speech using innovative brain-computer paradigms. The technology innovations developed in the project will also find applications in the study of other high cognitive functions of the brain such as learning and memory, as well as other clinical applications such as epilepsy monitoring.

The BrainCom project Consortium members are:

  • Catalan Institute of Nanoscience and Nanotechnology (ICN2) – Spain (Coordinator)
  • Institute of Microelectronics of Barcelona (CNM-IMB-CSIC) – Spain
  • University Grenoble Alpes – France
  • ARMINES/ Ecole des Mines de St. Etienne – France
  • Centre Hospitalier Universitaire de Grenoble – France
  • Multichannel Systems – Germany
  • University of Geneva – Switzerland
  • University of Oxford – United Kingdom
  • Ludwig-Maximilians-Universität München – Germany
  • Wavestone – Luxembourg

There doesn’t seem to be a website for the project but there is a BrainCom webpage on the European Commission’s CORDIS (Community Research and Development Information Service) website.

Nanocellulose as a biosensor

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While nanocellulose always makes my antennae quiver (for anyone unfamiliar with the phrase, it means something along the lines of ‘attracts my attention’), it’s the collaboration which intrigues me most about this research. From a July 23, 2015 news item on Azonano (Note: A link has been removed),

An international team led by the ICREA Prof Arben Merkoçi has just developed new sensing platforms based on bacterial cellulose nanopaper. These novel platforms are simple, low cost and easy to produce and present outstanding properties that make them ideal for optical (bio)sensing applications. …

ICN2 [Catalan Institute of Nanoscience and Nanotechnology; Spain] researchers are going a step further in the development of simple, low cost and easy to produce biosensors. In an article published in ACS Nano they recently reported various innovative nanopaper-based optical sensing platforms. To achieve this endeavour the corresponding author ICREA Prof Arben Merkoçi, Group Leader at ICN2 and the first author, Dr Eden Morales-Narváez (from ICN2) and Hamed Golmohammadi (visiting researcher at ICN2), established an international collaboration with the Shahid Chamran University (Iran), the Gorgan University of Agricultural Sciences and Natural Resources (Iran) and the Academy of Sciences of the Czech Republic. [emphases mine]

Spain, Iran, and the Czech Republic. That’s an interesting combination of countries.

A July 23, 2015 ICN2 press release, which originated the news item, provides more explanations and detail,

Cellulose is simple, naturally abundant and low cost. However, cellulose fibres ranging at the nanoscale exhibit extraordinary properties such as flexibility, high crystallinity, biodegradability and optical transparency, among others. The nanomaterial can be extracted from plant cellulose pulp or synthetized by non-pathogenic bacteria. Currently, nanocellulose is under active research to develop a myriad of applications including filtration, wound dressing, pollution removal approaches or flexible and transparent electronics, whereas it has been scarcely explored for optical (bio)sensing applications.

The research team led by ICREA Prof Arben Merkoçi seeks to design, fabricate, and test simple, disposable and versatile sensing platforms based on this material. They designed different bacterial cellulose nanopaper based optical sensing platforms. In the article, the authors describe how the material can be tuned to exhibit plasmonic or photoluminescent properties that can be exploited for sensing applications. Specifically, they have prepared two types of plasmonic nanopaper and two types of photoluminescent nanopaper using different optically active nanomaterials.

The researchers took advantage of the optical transparency, porosity, hydrophilicity, and amenability to chemical modification of the material. The bacterial cellulose employed throughout this research was obtained using a bottom-up approach and it is shown that it can be easily turned into useful devices for sensing applications using wax printing or simple punch tools. The scientific team also demonstrates how these novel sensing platforms can be modulated to detect biologically relevant analytes such as cyanide and pathogens among others.

According to the authors, this class of platforms will prove valuable for displaying analytical information in diverse fields such as diagnostics, environmental monitoring and food safety. Moreover, since bacterial cellulose is flexible, lightweight, biocompatible and biodegradable, the proposed composites could be used as wearable optical sensors and could even be integrated into novel theranostic devices. In general, paper-based sensors are known to be simple, portable, disposable, low power-consuming and inexpensive devices that might be exploited in medicine, detection of explosives or hazardous compounds and environmental studies.

Here’s a link to and a citation for the paper,

Nanopaper as an Optical Sensing Platform by Eden Morales-Narváez, Hamed Golmohammadi, Tina Naghdi, Hossein Yousefi, Uliana Kostiv, Daniel Horák, Nahid Pourreza, and Arben Merkoçi.ACS Nano, Article ASAP DOI: 10.1021/acsnano.5b03097 Publication Date (Web): July 2, 2015
Copyright © 2015 American Chemical Society

This paper is behind a paywall.

Feel the vibe on Nanophonics Day

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Officially, Nanophonics Day was held on May 26, 2014 but it’s never too late to appreciate good vibrations. Here’s more about the ‘day’ and nanophonics from a May 27, 2014 news item on Azonano (Note: A link has been removed),

The Nanophononics Day, collocated with the European Materials Research Society Spring Meeting (Lille, 26-30 May), aims to raise awareness about this emergent research area and the EUPHONON Project. ICREA Prof Dr Clivia Sotomayor, Group Leader at ICN2, coordinates this initiative.

A phonon is a collective excitation of atoms or molecules, a vibration of matter which plays a major role in physical properties of solids and liquids. Nanophononics is the science and engineering of these vibrations at the nanometre scale. Applications of the knowledge generated in the field might include novel devices aiming to decrease the power consumption for a low-power information society. It also includes phonon lasers and phenomena involving ultra-fast acoustic processes, or exceeding the limits of mass and pressure detections in membranes which might have an impact in safety and technology standards. Nanophononics links classical and quantum physics and translates this knowledge into everyday applications.

A May 26, 2014 Institut Català de Nanociència i Nanotecnologia (ICN2) news release, which originated the news item, provides more details about European research into nanophonics,

The EUPHONON project aims to amalgamate the activities on phonon science and technology in Europe to establish a strong community in this emerging research field. It started in November 2013, coordinated by Prof. Sebastian Volz from CNRS – École Central Paris. ICREA Prof Dr Clivia M Sotomayor Torres, Phononic and Photonic Nanostructures (P2N) Group Leader at the Institut Català de Nanociència i Nanotecnologia (ICN2), is among the 7 members of the consortium. She is the coordinator of the Nanophononics Day, intended to raise awareness about this emergent research area and the EUPHONON Project.

The Nanophononics Day is celebrated in May 26th 2014, collocated with Symposium D of the European Materials Research Society (E-MRS) Spring Meeting 2014 in Lille, entitled “Phonons and Fluctuation in Low Dimensional Structures” and with ICREA Prof Dr Clivia M Sotomayor Torres again among its organizers. It is probably the largest nanophononic event in Europe and a perfect context for a lively discussion about the most recent theoretical and experimental findings.

The Nanophononics Day includes conferences by leading scientists about recent breakthroughs in nano-scale thermal transport and how the recent achievements constitute solid base for nanophononics. Prof Gang Chen (MIT, USA) and Prof Olivier Bourgeois (CNRS Inst. Neel) will cover phonons in solid materials while phonons in biological matter will be addressed by Prof Thomas Dehoux (University of Bordeaux). Experimental methods using scanning probes will be illustrated by Prof Oleg Kolosov (Lancaster University) and Prof Severine Gomez (University of Lyon).

I wish you a belated Happy Nanophonics Day!