Tag Archives: microbiome

Food nanoparticles and their effect on intestinal flora (i.e., your gut microbiome)

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This work from Germany is largely speculative. The scientists seem to be interested in exploring how engineered nanoparticles and naturally occurring nanoparticles in food affect your gut. From a January 29, 2019 news item on ScienceDaily,

The intestinal microbiome is not only key for food processing but an accepted codeterminant for various diseases. Researchers led by the University Medical Center of Johannes Gutenberg University Mainz (JGU) identified effects of nanoparticles on intestinal microorganisms. The ultra-small particles adhere to intestinal microorganisms, thereby affecting their life cycle as well as cross talk with the host. One of the researchers’ observations was that nanoparticles’ binding inhibits the infection with Helicobacter pylori, a pathogen implicated in gastric cancer. The findings will stimulate further epidemiological studies and pave the way for the development of potential ‘probiotic’ nanoparticles for food. The discoveries were published in Science of Food.

A January 29, 2019 Johannes Gutenberg University Mainz (JGU) press release (also on EurekAlert), which originated the news item, provides more detail,

Due to their minute size, nanoparticles have unique characteristics and capabilities, such as adhering to microstructures. Nanotechnology is as an important driver of innovation for both consumer industry and medicine. In medicine, the focus is on improving diagnostics and therapeutics, while industry addresses mainly product optimization. Hence, synthetic nanoparticles are already used as additives to improve the characteristics of food. But how can we use nanotechnology more efficiently and safely in food? And are there unknown effects of nanoparticles, which need to be further exploited?

Nutrition strongly influences the diversity and composition of our microbiome. ‘Microbiome’ describes all colonizing microorganisms present in a human being, in particular, all the bacteria in the gut. In other words, your microbiome includes your intestinal flora as well as the microorganisms that colonize your skin, mouth, and nasal cavity.

Scientists and clinicians are interested in microbiomes because of their positive or negative effects on the host. These include modulation of our immune system, metabolism, vascular aging, cerebral functioning, and our hormonal system. The composition of the microbiome seems to play an important role for the development of various disorders, such as cardiovascular diseases, cancer, allergies, obesity, and even mental disorders. “Hence, nutrition and its containing nanoparticulates may affect the microbiome-host balance, finally influencing human health. In order to reduce potential risks and, ideally, promote health, the impact of dietary nanoparticles needs to be understood,” emphasized Professor David J. McClements from the Department of Food Science at the University of Massachusetts in Amherst, USA.

“Prior to our studies, nobody really looked whether and how nano-additives directly influence the gastrointestinal flora,” commented Professor Roland Stauber of the Department of Otolaryngology, Head, and Neck Surgery at the Mainz University Medical Center. “Hence, we studied at a wide range of technical nanoparticles with clearly defined properties in order to mimic what happens to currently used or potential future nanosized food additives. By simulating the journey of particles through the different environments of the digestive tract in the laboratory, we found that the all tested nanomaterials were indeed able to bind to bacteria.” explained Stauber.

The scientists discovered that these binding processes can have different outcomes. On the one hand, nanoparticle-bound microorganisms were less efficiently recognized by the immune system, which may lead to increased inflammatory responses. On the other hand, ‘nano-food’ showed beneficial effects. In cell culture models, silica nanoparticles inhibited the infectivity of Helicobacter pylori, which is considered to be one of the main agents involved in gastric cancer.

‘It was puzzling that we were able to also isolate naturally occurring nanoparticles from food, like beer, which showed similar effects. Nanoparticles in our daily food are not just those added deliberately but can also be generated naturally during preparation. Nanoparticulates are already omnipresent,” concluded Stauber.

The insights of the study will allow to derive strategies for developing and utilizing synthetic or natural nanoparticles to modulate the microbiome as beneficial ingredients in functional foods. “The challenge is to identify nanoparticles that fit the desired purpose, perhaps even as probiotic food supplements in the future. Challenge accepted,” emphasized Stauber and his team.

Here’s a link to and a citation for the paper,

Nanosized food additives impact beneficial and pathogenic bacteria in the human gut: a simulated gastrointestinal study by Svenja Siemer, Angelina Hahlbrock, Cecilia Vallet, David Julian McClements, Jan Balszuweit, Jens Voskuhl, Dominic Docter, Silja Wessler, Shirley K. Knauer, Dana Westmeier, & Roland H. Stauber. npj Science of Foodvolume 2, Article number: 22 (2018) DOI: https://doi.org/10.1038/s41538-018-0030-8 Published 04 December 2018

This paper is open access.

ISEA (International Symposium on Electronic Arts) 2015 and the pronoun ‘I’

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The 2015 International Symposium on Electronic Arts (or ISEA 2015) held  in Vancouver ended yesterday, Aug. 19, 2015. It was quite an experience both as a participant and as a presenter (mentioned in my Aug. 14, 2015 posting, Sneak peek: Steep (1): a digital poetry of gold nanoparticles). Both this ISEA and the one I attended previously in 2009 (Belfast, Northern Ireland, and Dublin, Ireland) were jampacked with sessions, keynote addresses, special events, and exhibitions of various artworks. Exhilarating and exhausting, that is the ISEA experience for me and just about anyone else I talked to here in Vancouver (Canada). In terms of organization, I have to give props to the Irish. Unfortunately, the Vancouver team didn’t seem to have given their volunteers any training and technical difficulties abounded. Basics such as having a poster outside a room noting what session was taking place, signage indicating which artist’s work was being featured, and good technical support (my guy managed to plug in a few things but seemed disinclined or perhaps didn’t have the technical expertise (?) to troubleshoot prior to the presentation) seemed elusive (a keynote presentation had to be moved due to technical requirements [!] plus no one told the volunteer staff who consequently misdirected people). Ooops.

Despite the difficulties, people remained enthusiastic and that’s a tribute to both the participants and, importantly, the organizers. The Vancouver ISEA was a huge undertaking with over 1000 presentation submissions made and over 1800 art work submissions. They had 900+ register and were the first ISEA able to offer payment to artists for their installations. Bravo to Philippe Pasquier, Thecla Schiphorst, Kate Armstrong, Malcolm Levy, and all the others who worked hard to pull this off.

Moving on to ‘I’, while the theme for ISEA 2015 was Disruption, I noticed a number of presentations focused on biology and on networks (in particular, generative networks). In some ways this parallels what’s happening in the sciences where more notice is being given to networks and network communications of all sorts.  For example, there’s an Aug. 19, 2015 news item on ScienceDaily suggesting that our use of the pronoun ‘I’ may become outdated.  What we consider to be an individual may be better understood as a host for a number of communities or networks,

Recent microbiological research has shown that thinking of plants and animals, including humans, as autonomous individuals is a serious over-simplification.

A series of groundbreaking studies have revealed that what we have always thought of as individuals are actually “biomolecular networks” that consist of visible hosts plus millions of invisible microbes that have a significant effect on how the host develops, the diseases it catches, how it behaves and possibly even its social interactions.

“It’s a case of the whole being greater than the sum of its parts,” said Seth Bordenstein, associate professor of biological sciences at Vanderbilt University, who has contributed to the body of scientific knowledge that is pointing to the conclusion that symbiotic microbes play a fundamental role in virtually all aspects of plant and animal biology, including the origin of new species.

In this case, the parts are the host and its genome plus the thousands of different species of bacteria living in or on the host, along with all their genomes, collectively known as the microbiome. (The host is something like the tip of the iceberg while the bacteria are like the part of the iceberg that is underwater: Nine out of every 10 cells in plant and animal bodies are bacterial. But bacterial cells are so much smaller than host cells that they have generally gone unnoticed.)

An Aug. 19, 2015 Vanderbilt University news release, which originated the news item, describes this provocative idea (no more ‘I’)  further,

Microbiologists have coined new terms for these collective entities — holobiont — and for their genomes — hologenome. “These terms are needed to define the assemblage of organisms that makes up the so-called individual,” said Bordenstein.

In the article “Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes” published online Aug. 18 [2015] in the open access journal PLOS Biology, Bordenstein and his colleague Kevin Theis from the University of Michigan take the general concepts involved in this new paradigm and break them down into underlying principles that apply to the entire field of biology.

They make specific and refutable predictions based on these principles and call for other biologists to test them theoretically and experimentally.

“One of the basic expectations from this conceptual framework is that animal and plant experiments that do not account for what is happening at the microbiological level will be incomplete and, in some cases, will be misleading as well,” said Bordenstein.

The first principle they advance is that holobionts and hologenomes are fundamental units of biological organization.

Another is that evolutionary forces such as natural selection and drift may act on the hologenome not just on the genome. So mutations in the microbiome that affect the fitness of a holobiont are just as important as mutations in the host’s genome. However, they argue that this does not change the basic rules of evolution but simply upgrades the types of biological units that the rules may act upon.

Although it does not change the basic rules of evolution, holobionts do have a way to respond to environmental challenges that is not available to individual organisms: They can alter the composition of their bacterial communities. For example, if a holobiont is attacked by a pathogen that the host cannot defend against, another symbiont may fulfill the job by manufacturing a toxin that can kill the invader. In this light, the microbes are as much part of the holobiont immune system as the host immune genes themselves.

According to Bordenstein, these ideas are gaining acceptance in the microbiology community. At the American Society of Microbiology General Meeting in June [2015], he convened the inaugural session on “Holobionts and Their Hologenomes” and ASM’s flagship journal mBio plans to publish a special issue on the topic in the coming year. [emphases are mine]

However, adoption of these ideas has been slower in other fields.

“Currently, the field of biology has reached an inflection point. The silos of microbiology, zoology and botany are breaking down and we hope that this framework will help further unify these fields,” said Bordenstein.

Not only will this powerful holistic approach affect the basic biological sciences but it also is likely to impact the practice of personalized medicine as well, Bordenstein said.

Take the missing heritability problem, for example. Although genome-wide studies have provided valuable insights into the genetic basis of a number of simple diseases, they have only found a small portion of the genetic causes of a number of more complex conditions such as autoimmune and metabolic diseases.

These may in part be “missing” because the genetic factors that cause them are in the microbiome, he pointed out.

“Instead of being so ‘germophobic,’ we need to accept the fact that we live in and benefit from a microbial world. We are as much an environment for microbes as microbes are for us,” said Bordenstein.

Here’s a link to and a citation for the paper,

Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes by Seth R. Bordenstein and Kevin R. Theis. PLOS DOI: 10.1371/journal.pbio.1002226 Published: August 18, 2015

This is an open access paper.

It’s intriguing to see artists and scientists exploring ideas that resonate with each other. In fact, ISEA 2015 hosted a couple of sessions on BioArt, as well as, having sessions devoted to networks. While, I wasn’t thinking about networks or biological systems when I wrote my poem on gold nanoparticles, I did pose this possibility (how we become the sum of our parts) at the end:

Nature’s alchemy
breathing them
eating them
drinking them
we become gold
discovering what we are

As for how Raewyn handled the idea, words fail, please do go here to see the video here.

International Women’s Day March 8, 2015: Pioneering Women of Physics, Science goes to the Movies, and Transistor

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In honour of International Women’s Day 2015, here are four items about women and science. The first features Canada’s Perimeter Institute (PI) and a tribute to pioneering women in physics, from a Feb. 26, 2015 PI news release,

They discovered pulsars, found the first evidence of dark matter, pioneered mathematics, radioactivity, nuclear fission, elasticity, and computer programming, and have even stopped light.

…

Jocelyn Bell Burnell…

Rosalind Franklin…

Hedy Lamarr…

Wu Chien ShiungIt’s a fascinating group of women and these four provide a taste only.

The second item about women in science is also from the Perimeter Institute, which is hosting an ‘Inspiring Future Women in Science’ conference on Friday, May 6, 2015. From the PI program page,

Are you interested in turning your love of science into a career?  Perimeter Institute is inviting female high school students to participate in an inspirational half day conference on Friday March 6, 2015.  The goal is to bring together like minded young women with a strong interest in science and expose them to the rewards, challenges and possibilities of a career in science.

kEYNOTE ADDRESSES

Rima Brek – Rima is a Ubisoft veteran of 16 years and a founding team member of the Toronto studio. There, she was responsible for kick-starting the technology team and helping ship the critically-acclaimed Tom Clancy’s Splinter Cell Blacklist. She is a sought-after advisor whose guidance and leadership have directly helped Ubisoft Toronto grow to over 300 game developers in just five years.

…

Dianna Cowern – Dianna is a science communicator and educator. She received her degree in physics from MIT and completed a post-baccalaureate fellowship in astrophysics at Harvard. She then worked on mobile applications as a software engineer at General Electric before beginning a position at the University of California, San Diego as a physics outreach coordinator. She is the primary content creator for her educational YouTube channel, Physics Girl.

Roslyn Bern – As president of the Leacross Foundation, Roslyn Bern has been creating opportunities for women and girls throughout Canada. She has worked on initiatives for over 20 years, as an educator, a business woman, and as a philanthropist. She has focused on developing scholarships and bursaries for girls in under-represented career fields. She has been instrumental on sending teenage girls to the Arctic and Antarctic with Students on Ice, and created a partnership with colleges and corporations to certify STEM women in Electrical engineering. …

By the time this piece is posted it will be too late to attend this year’s event but interested parties could plan for next year in Waterloo, Ontario, Canada.

The third item concerns an initiative from the Public Radio Exchange, PRX. Called Transistor; a STEM [science, technology, engineering, and mathematics] audio project. From the series page,

Transistor is a transformative STEM podcast, taking the electricity of a story and channeling it to listeners. Three scientist hosts — a biologist, an astrophysicist, and a neuroscientist — report on conundrums, curiosities, and current events in and beyond their fields. Sprinkled among their episodes are the winners of the STEM Story Project, a competition we held for unique science radio.

Much as the transistor radio was a new technical leap, this Transistor features new women voices and sounds from new science producers.

PRX presents Transistor, applying our storytelling and podcast experience to science. The Sloan Foundation powers Transistor with funding and support. And listeners complete the circuit.

The Feb. 18, 2015 PRX news release offers more details about the hosts and their first podcasts,

PRX is thrilled to announce the launch of a new weekly podcast series Transistor (official press release). Three scientist hosts — a biologist, an astrophysicist, and a neuroscientist — report on conundrums, curiosities, and current events in and beyond their fields. Sprinkled among their episodes are the winners of the PRX STEM Story Project, a competition we held for unique science radio.

Just as the transistor radio was a new technical leap, this Transistor features new women voices and their science perspectives. We’ve launched with four episodes from our three scientist hosts:

  • Dr. Michelle Thaller, an astrophysicist at NASA’s Goddard Space Flight Center, who studies binary stars and the life cycles of the stars.
    • We Are Stardust: We’re closer than ever before to discovering if we’re not alone in the universe. Astrophysicist Michelle Thaller visits the NASA lab that discovered that comets contain some of the very same chemical elements that we contain. Then, Michelle talks to a Vatican planetary scientist about how science and religion can meet on the topic of life beyond Earth.
  • Dr. Christina Agapakis, a biologist and writer based in Los Angeles. Her research focuses on the intersection of microbiology and design, exploring the symbiosis among microbes and biology, technology, and culture.
    • Food, Meet Fungus: The microbiome — the trillions of bacteria, fungi, and viruses that live in and on our body — is hot right now. We explore what we do know in the face of so much hope and hype, starting with food.
  • Dr. Wendy Suzuki, a Professor of Neural Science and Psychology in the Center for Neural Science at New York University, whose research focuses on understanding how our brains form and retain new long-term memories and the effects of aerobic exercise on memory. Her book Healthy Brain, Happy Life will be published by Harper Collins in the Spring of 2015.
    • Totally Cerebral: Untangling the Mystery of Memory: Neuroscientist Wendy Suzuki introduces us to scientists who have uncovered some of the deepest secrets about our brains. She begins by talking with experimental psychologist Brenda Milner [interviewed in her office at McGill University, Montréal, Quebéc], who in the 1950s, completely changed our understanding of the parts of the brain important for forming new long-term memories.
    • Totally Cerebral: The Man Without a Memory: Imagine never being able to form a new long term memory after the age of 27. Welcome to the life of the famous amnesic patient “HM”. Neuroscientist Suzanne Corkin studied HM for almost half a century, and gives us a glimpse of what daily life was like for him, and his tremendous contribution to our understanding of how our memories work.

Each scientist is working with a talented independent producer: Lauren Ober, Julie Burstein, and Kerry Donahue.

Subscribe to the show through iTunes or RSS, or you can stream it on PRX.org.

I listened to all four of the introductory programs which ranged in running time from about 16 mins. to 37 mins. All three hosts are obviously excited about sharing their science stories and I look forward to hearing more from them.

The last item comes from David Bruggeman’s Feb. 20, 2015 post on his Pasco Phronesis blog (Note: A link has been removed),

Science Goes to the Movies is a new program produced by the City University of New York and sponsored by the Alfred P. Sloan Foundation. … The hosts are Faith Salie, a journalist and host you might have heard before as a panelist on Wait Wait…Don’t Tell Me, and Dr. Heather Berlin, a neuroscientist whose research focuses on brain-body relationships and psychological disorders.  (In what makes for a small world, Berlin is married to Canadian rap troubadour Baba Brinkman.) …

Science Goes to the Movies can be found here where you’ll also find a video of the first episode,

Hallucinations and black holes vie for the 2015 Oscar. Co-hosts Faith Salie and Dr. Heather Berlin are joined by AMNH astrophysicist Dr. Emily Rice for a look at the science in three of the top films of the year, Birdman, The Theory of Everything, and Interstellar.

Episode 102 featuring Into the Woods and the Imitation Game will première on March 20, 2015,

Science Goes to the Movies looks at The Imitation Game and Into the Woods. With special guest cryptologist Rosario Gennaro, we discuss pattern recognition in the work of both Alan Turing and Stephen Sondheim.

Science Goes to the Movies is made possible by generous support from the Alfred P. Sloan Foundation.

Kudos to the Alfred P. Sloan foundation for funding two exciting ventures: Transistors and Science Goes to the Movies.

Getting back to where I started: Happy International Women’s Day 2015!