Tag Archives: molecular motors

Getting one step closer to molecular robots

A July 5, 2016 news item on ScienceDaily announced research from Hokkaido University (Japan),

Scientists at Japan’s Hokkaido University have developed light-powered molecular motors that repetitively bend and unbend, bringing us closer to molecular robots.

A July 6, 2016 Hokkaido University press release (also on EurekAlert), which originated the news item, expands on the theme,

Researchers are working on mimicking cellular systems to develop molecular motors that can move or even deliver drugs to target tissues. Engineering such motors may ultimately lead to molecular robots that can execute more complex tasks. To this end, researchers must find ways to convert motion at the molecular level to motion at the macroscopic level. They also must find ways to cause chemical reactions to repeat autonomously and continuously.
Yoshiyuki Kageyama, Sadamu Takeda and colleagues at Hokkaido University’s Department of Chemistry have successfully created a chemical compound, or a crystalline assembly, which autonomously repeated flipping under blue light.

The team made crystals composed of an organic compound, called azobenzene, commonly used in dye manufacturing, and oleic acid, commonly found in cooking oil. Azobenzene molecules take two structurally different forms: cis and trans. They repetitively convert from one form to the other under blue right. The scientists tested if this would influence the structure of the azobenzene-oleic acid crystal, which contained unequal amounts of cis– and trans-azobenzene.

By applying blue light to the crystals in solution, the team observed, under a microscope, an oscillatory bending-unbending motion of the thin crystals, suggesting the existence of two stable structures, bent or unbent, depending on the cis/trans ratio. The frequency of the motion increased when the light intensity was increased. Some crystal complexes even exhibited ‘swimming-like’ motions in the water. Previously reported light-responsive materials have been limited in their ability to deform. The properties of the compounds in the Hokkaido University-developed crystals, however, allowed for a two-step switching mechanism, resulting in regular repetitive oscillations.

Schematic illustration of each step of the self-oscillatory motion. (Ikegami T. et. al., Angewandte Chemie International Edition, May 19, 2016)

Schematic illustration of each step of the self-oscillatory motion. (Ikegami T. et. al., Angewandte Chemie International Edition, May 19, 2016)

“The ability to self-organize rhythmic motions, such as the repetitive flipping motion we observed, is one of the fundamental characteristics of living organisms”, says Kageyama. “This mechanism can be used in the future to develop bio-inspired molecular motors and robots that will find applications in wide areas, including medicine”.

You can observe the flipping here in this video provided by Hokkaido University,

Here’s a link to and a citation for the paper,

Dissipative and Autonomous Square-Wave Self-Oscillation of a Macroscopic Hybrid Self-Assembly under Continuous Light Irradiation by Tomonori Ikegami, Dr. Yoshiyuki Kageyama, Kazuma Obara, and Prof. Sadamu Takeda. Angewandte Chemie International Edition Volume 55, Issue 29, pages 8239–8243, July 11, 2016 DOI: 10.1002/anie.201600218 Version of Record online: 19 MAY 2016

© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim

This paper is behind a paywall.

Motor proteins have a stiff-legged walk

An April 23, 2015 news item on Nanowerk calls to mind Monty Python and its Ministry of Silly Walks,

The ‘stiff-legged’ walk of a motor protein along a tightrope-like filament has been captured for the first time.

Because cells are divided in many parts that serve different functions some cellular goodies need to be transported from one part of the cell to another for it to function smoothly. There is an entire class of proteins called ‘molecular motors’, such as myosin 5, that specialise in transporting cargo using chemical energy as fuel.

Remarkably, these proteins not only function like nano-scale lorries, they also look like a two-legged creature that takes very small steps. But exactly how Myosin 5 did this was unclear.

For anyone unfamiliar with The Ministry of Silly Walks (from its Wikipedia entry; Note: Links have been removed),

“The Ministry of Silly Walks” is a sketch from the Monty Python comedy troupe’s television show Monty Python’s Flying Circus, season 2, episode 14, which is entitled “Face the Press”.

Here’s an image from the sketch, which perfectly illustrates a stiff-legged walk,

John Cleese as a Civil Servant in the Ministry of Silly Walks. Screenshot from Monty Python's Flying Circus episode, Dinsdale (Alternate episode title: Face the Press). Ministry_of_Silly_Walks.jpg ‎(300 × 237 pixels, file size: 14 KB, MIME type: image/jpeg) [downloaded from http://en.wikipedia.org/wiki/File:Ministry_of_Silly_Walks.jpg]

John Cleese as a Civil Servant in the Ministry of Silly Walks. Screenshot from Monty Python’s Flying Circus episode, Dinsdale (Alternate episode title: Face the Press). Ministry_of_Silly_Walks.jpg ‎(300 × 237 pixels, file size: 14 KB, MIME type: image/jpeg) [downloaded from http://en.wikipedia.org/wiki/File:Ministry_of_Silly_Walks.jpg]

As far as I can tell, the use of this image would fall under the notion of ‘fair dealing‘ as it’s called in Canada.

Getting back to the Nanowerk news item, it started life as a University of Oxford Science blog April 23, 2015 posting  by Pete Wilton (Note: A link has been removed),

The motion of myosin 5 has now been recorded by a team led by Oxford University scientists using a new microscopy technique that can ‘see’ tiny steps of tens of nanometres captured at up to 1000 frames per second. The findings are of interest for anyone trying to understand the basis of cellular function but could also help efforts aimed at designing efficient nanomachines.

‘Until now, we believed that the sort of movements or steps these proteins made were random and free-flowing because none of the experiments suggested otherwise,’ said Philipp Kukura of Oxford University’s Department of Chemistry who led the research recently reported in the journal eLife. ‘However, what we have shown is that the movements only appeared random; if you have the capability to watch the motion with sufficient speed and precision, a rigid walking pattern emerges.’

One of the key problems for those trying to capture proteins on a walkabout is that not only are these molecules small – with steps much smaller than the wavelength of light and therefore the resolution of most optical microscopes – but they are also move very quickly.

Philipp describes how the team had to move from the microscope equivalent of an iPhone camera to something more like the high speed cameras used to snap speeding bullets. Even with such precise equipment the team had to tag the ‘feet’ of the protein in order to precisely image its gait: one foot was tagged with a quantum dot, the other with a gold particle just 20 nanometres across. (Confusingly, technically speaking, these ‘feet’ are termed the ‘heads’ of the protein because they bind to the actin filament).

I recommend reading Wilton’s post in its entirety. Meanwhile, here’s a 12 secs. video illustrating the motor protein’s stiff-legged walk,

Here’s a link to and a citation for the paper,

Structural dynamics of myosin 5 during processive motion revealed by interferometric scattering microscopy by Joanna Andrecka, Jaime Ortega Arroyo, Yasuharu Takagi, Gabrielle de Wit, Adam Fineberg, Lachlan MacKinnon, Gavin Young, James R Sellers, & Philipp Kukura. eLife 2015;4:e05413 DOI: http://dx.doi.org/10.7554/eLife.05413Published March 6, 2015

This paper is open access.

As for silly walks, there is more than one version of the sketch with John Cleese on YouTube but I was particularly taken with this public homage which took place in Brno (Czech Republic) in Jan. 2013,

Enjoy!

Are we becoming machines?

According to the advertisement (being broadcast in January 2013 on US television channels) for HTC’s Droid smartphone, we’ve already become machines,


This advertisement isn’t the only instance, look at this from a Jan. 17, 2013 news release on EurekAlert,

A nano-gear in a nano-motor inside you

To live is to move. You strike to swat that irritable mosquito, which skilfully evades the hand of death. How did that happen? Who moved your hand, and what saved the mosquito? Enter the Molecular Motors, nanoscale protein-machines in the muscles of your hand and wings of the mosquito. You need these motors to swat mosquitoes, blink your eyes, walk, eat, drink… just name it. Millions of motors tug as a team within your muscles, and you swat the mosquito. This is teamwork at its exquisite best.

It’s not unusual to have bodily processes described in terms that one uses for machines (particularly in science-related publications), what’s different here (for me at least) is the intimacy in the ad. The phone is plugged into your chest and the upgrade is to your brain.

This ad is part of a continuum in the popular culture conversation (e.g. Deux Ex game featuring human enhancement and augmentation as  mentioned in my Aug. 30, 2011 posting and in my Aug. 18, 2011 posting) and the prosthetic in the ear seems to be a reference to cochlear implants but now they are for anyone who might care to augment their hearing past the limits of what has been possible for humans. Congratulations, you’ve been upgraded.