Tag Archives: Queen Mary University of London

The how and why of nanopores

An August 19, 2021 Universidade NOVA de Lisboa ITQB NOVA press release (also on EurekAlert) explains what nanopores are while describing research into determining how their locations can be controlled,

At the simplest of levels, nanopores are (nanometre-sized) holes in an insulating membrane. The hole allows ions to pass through the membrane when a voltage is applied, resulting in a measurable current. When a molecule passes through a nanopore it causes a change in the current, this can be used to characterize and even identify individual molecules. Nanopores are extremely powerful single-molecule biosensing devices and can be used to detect and sequence DNA, RNA, and even proteins. Recently, it has been used in the SARS-CoV-2 virus sequencing.  

Solid-state nanopores are an extremely versatile type of nanopore formed in ultrathin membranes (less than 50 nanometres), made from materials such as silicon nitride (SiNx). Solid-state nanopores can be created with a range of diameters and can withstand a multitude of conditions (discover more about solid-state nanopore fabrication techniques here). One of the most appealing techniques with which to fabricate nanopores is Controlled Breakdown (CBD). This technique is quick, reduces fabrication costs, does not require specialized equipment, and can be automated.

CBD is a technique in which an electric field is applied across the membrane to induce a current. At some point, a spike in the current is observed, signifying pore formation. The voltage is then quickly reduced to ensure the fabrication of a single, small nanopore.

The mechanisms underlying this process have not been fully elucidated thus an international team involving ITQB NOVA decided to further investigate how electrical conduction through the membrane occurs during breakdown, namely how oxidation and reduction reactions (also called redox reactions, they imply electron loss or gain, respectively) influence the process. To do this, the team created three devices in which the electric field is applied to the membrane (a silicon-rich SiNx membrane) in different ways: via metal electrodes on both sides of the membrane; via electrolyte solutions on both sides of the membrane; and via a mixed device with a metal electrode on one side and an electrolyte solution on the other.

Results showed that redox reactions must occur at the membrane-electrolyte interface, whilst the metal electrodes circumvent this need. The team also demonstrated that, because of this phenomenon, nanopore fabrication could be localized to certain regions by performing CBD with metal microelectrodes on the membrane surface. Finally, by varying the content of silicon in the membrane, the investigators demonstrated that conduction and nanopore formation is highly dependent on the membrane material since it limits the electrical current in the membrane.

“Controlling the location of nanopores has been of interest to us for a number of years”, says James Yates. Pedro Sousa adds that “our findings suggest that CBD can be used to integrate pores with complementary micro or nanostructures, such as tunneling electrodes or field-effect sensors, across a range of different membrane materials.”  These devices may then be used for the detection of specific molecules, such as proteins, DNA, or antibodies, and applied to a wide array of scenarios, including pandemic surveillance or food safety.

This project was developed by a research team led by ITQB NOVA’s James Yates and has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (grant agreement No 724300 and 875525). Co-author Pedro Miguel Sousa is also from ITQB NOVA. The other consortium members are from the University of Oxford, Oak Ridge National Laboratory, Imperial College London and Queen Mary University of London. The authors would like to thank Andrew Briggs for providing financial support.

Here’s a link to and a citation for the paper,

Understanding Electrical Conduction and Nanopore Formation During Controlled Breakdown by Jasper P. Fried, Jacob L. Swett, Binoy Paulose Nadappuram, Aleksandra Fedosyuk, Pedro Miguel Sousa, Dayrl P. Briggs, Aleksandar P. Ivanov, Joshua B. Edel, Jan A. Mol, James R. Yates. Small DOI: https://doi.org/10.1002/smll.202102543 First published: 01 August 2021

This paper is open access.

Regenerating dental enamel

For anyone who’s concerned about their dental enamel, this research might prove encouraging. From a June 1, 2018 news item on Nanowerk,

Researchers at Queen Mary University of London [UK][ have developed a new way to grow mineralised materials which could regenerate hard tissues such as dental enamel and bone.

Enamel, located on the outer part of our teeth, is the hardest tissue in the body and enables our teeth to function for a large part of our lifetime despite biting forces, exposure to acidic foods and drinks and extreme temperatures. This remarkable performance results from its highly organised structure.

However, unlike other tissues of the body, enamel cannot regenerate once it is lost, which can lead to pain and tooth loss. These problems affect more than 50 per cent of the world’s population and so finding ways to recreate enamel has long been a major need in dentistry.

A June 1, 2018 Queen Mary University of London press release, which originated the news item, provides more detail,

The study, published in Nature Communications, shows that this new approach can create materials with remarkable precision and order that look and behave like dental enamel.

The materials could be used for a wide variety of dental complications such as the prevention and treatment of tooth decay or tooth sensitivity – also known as dentin hypersensitivity.

Simple and versatile

Dr Sherif Elsharkawy, a dentist and first author of the study from Queen Mary’s School of Engineering and Materials Science, said: “This is exciting because the simplicity and versatility of the mineralisation platform opens up opportunities to treat and regenerate dental tissues. For example, we could develop acid resistant bandages that can infiltrate, mineralise, and shield exposed dentinal tubules of human teeth for the treatment of dentin hypersensitivity.”

The mechanism that has been developed is based on a specific protein material that is able to trigger and guide the growth of apatite nanocrystals at multiple scales – similarly to how these crystals grow when dental enamel develops in our body. This structural organisation is critical for the outstanding physical properties exhibited by natural dental enamel.

Lead author Professor Alvaro Mata, also from Queen Mary’s School of Engineering and Materials Science, said: “A major goal in materials science is to learn from nature to develop useful materials based on the precise control of molecular building-blocks. The key discovery has been the possibility to exploit disordered proteins to control and guide the process of mineralisation at multiple scales. Through this, we have developed a technique to easily grow synthetic materials that emulate such hierarchically organised architecture over large areas and with the capacity to tune their properties.”

Mimic other hard tissues

Enabling control of the mineralisation process opens the possibility to create materials with properties that mimic different hard tissues beyond enamel such as bone and dentin. As such, the work has the potential to be used in a variety of applications in regenerative medicine. In addition, the study also provides insights into the role of protein disorder in human physiology and pathology.

Here’s a link to and a citation for the paper,

Protein disorder–order interplay to guide the growth of hierarchical mineralized structures by Sherif Elsharkawy, Maisoon Al-Jawad, Maria F. Pantano, Esther Tejeda-Montes, Khushbu Mehta, Hasan Jamal, Shweta Agarwal, Kseniya Shuturminska, Alistair Rice, Nadezda V. Tarakina, Rory M. Wilson, Andy J. Bushby, Matilde Alonso, Jose C. Rodriguez-Cabello, Ettore Barbieri, Armando del Río Hernández, Molly M. Stevens, Nicola M. Pugno, Paul Anderson, & Alvaro Mata. Nature Communicationsvolume 9, Article number: 2145 (2018) Published 01 June 2018 DOI: https://doi.org/10.1038/s41467-018-04319-0

This paper is open access.

One final comment, this work is at the ‘in vitro’ stage. More colloquially, this is being done in a petri dish or glass vial or some other container and it’s going to be a long time before there are going to be any human clinical trials, assuming the work gets that far.

Complex networks to provide ‘grand unified theory’

Trying to mesh classical physics and quantum physics together in one theory which accounts for behaviour on the macro and quantum scales has occupied scientists for decades and it seems that mathematicians have discovered a clue so solving the mystery. A Sept. 13, 2015 news item on Nanotechnology Now describes the findings,

Mathematicians investigating one of science’s great questions — how to unite the physics of the very big with that of the very small — have discovered that when the understanding of complex networks such as the brain or the Internet is applied to geometry the results match up with quantum behavior.

A Sept. 9, 2015 Queen Mary University of London press release, which originated the news item, describes the collaboration between Queen Mary and Karlsruhe Institute of Technology mathematicians,

The findings, published today (Thursday) in Scientific Reports, by researchers from Queen Mary University of London and Karlsruhe Institute of Technology, could explain one of the great problems in modern physics.

Currently ideas of gravity, developed by Einstein and Newton, explain how physics operates on a very large scale, but do not work at the sub-atomic level. Conversely, quantum mechanics works on the very small scale but does not explain the interactions of larger objects like stars. Scientists are looking for a so called ‘grand unified theory’ that joins the two, known as quantum gravity.

Several models have been proposed for how different quantum spaces are linked but most assume that the links between quantum spaces are fairly uniform, with little deviation from the average number of links between each space. The new model, which applies ideas from the theory of complex networks, has found that some quantum spaces might actually include hubs, i.e. nodes with significantly more links than others, like a particularly popular Facebook user.

Calculations run with this model show that these spaces are described by well-known quantum Fermi-Dirac, and Bose-Einstein statistics, used in quantum mechanics, indicating that they could be useful to physicists working on quantum gravity.

Dr Ginestra Bianconi, from Queen Mary University of London, and lead author of the paper, said:

“We hope that by applying our understanding of complex networks to one of the fundamental questions in physics we might be able to help explain how discrete quantum spaces emerge.

“What we can see is that space-time at the quantum-scale might be networked in a very similar way to things we are starting to understand very well like biological networks in cells, our brains and online social networks.”

Here’s a link to and a citation for the paper,

Complex Quantum Network Manifolds in Dimension d > 2 are Scale-Free by Ginestra Bianconi & Christoph Rahmede. Scientific Reports 5, Article number: 13979 (2015) doi:10.1038/srep13979 Published online: 10 September 2015

This is an open access paper.

Pop and rock music lead to better solar cells

A Nov. 6, 2013 news item on Nanowerk reveals that scientists at the Imperial College of London (UK) and Queen Mary University of London (UK),

Playing pop and rock music improves the performance of solar cells, according to new research from scientists at Queen Mary University of London and Imperial College London.

The high frequencies and pitch found in pop and rock music cause vibrations that enhanced energy generation in solar cells containing a cluster of ‘nanorods’, leading to a 40 per cent increase in efficiency of the solar cells.

The study has implications for improving energy generation from sunlight, particularly for the development of new, lower cost, printed solar cells.

The Nov. 6, 2013 Imperial College of London (ICL) news release, which originated the news item, gives more details about the research,

The researchers grew billions of tiny rods (nanorods) made from zinc oxide, then covered them with an active polymer to form a device that converts sunlight into electricity.

Using the special properties of the zinc oxide material, the team was able to show that sound levels as low as 75 decibels (equivalent to a typical roadside noise or a printer in an office) could significantly improve the solar cell performance.

“After investigating systems for converting vibrations into electricity this is a really exciting development that shows a similar set of physical properties can also enhance the performance of a photovoltaic,” said Dr Steve Dunn, Reader in Nanoscale Materials from Queen Mary’s School of Engineering and Materials Science.

Scientists had previously shown that applying pressure or strain to zinc oxide materials could result in voltage outputs, known as the piezoelectric effect. However, the effect of these piezoelectric voltages on solar cell efficiency had not received significant attention before.

“We thought the soundwaves, which produce random fluctuations, would cancel each other out and so didn’t expect to see any significant overall effect on the power output,” said James Durrant, Professor of Photochemistry at Imperial College London, who co-led the study.

“The key for us was that not only that the random fluctuations from the sound didn’t cancel each other out, but also that some frequencies of sound seemed really to amplify the solar cell output – so that the increase in power was a remarkably big effect considering how little sound energy we put in.”

“We tried playing music instead of dull flat sounds, as this helped us explore the effect of different pitches. The biggest difference we found was when we played pop music rather than classical, which we now realise is because our acoustic solar cells respond best to the higher pitched sounds present in pop music,” he concluded.

The discovery could be used to power devices that are exposed to acoustic vibrations, such as air conditioning units or within cars and other vehicles.

This is not the first time that music has been shown to affect properties at the nanoscale. A March 12, 2008 article by Anna Salleh for the Australian Broadcasting Corporation featured a researcher who tested nanowire growth by playing music (Note: Links have been removed),

Silicon nanowires grow more densely when blasted with Deep Purple than any other music tested, says an Australian researcher.

But the exact potential of music in growing nanowires remains a little hazy.

David Parlevliet, a PhD student at Murdoch University in Perth, presented his findings at a recent Australian Research Council Nanotechnology Network symposium in Melbourne.

Parlevliet is testing nanowires for their ability to absorb sunlight in the hope of developing solar cells from them.

I’ve taken a look at the references cited by researchers in their paper and there is nothing from Parleviet listed, so, this seems to be one of those cases where more than one scientist is thinking along the similar lines, i.e., that sound might affect nanoscale structures in such a way as to improve solar cell efficiency.

Here’s a link to and a citation for the ICL/University of Queen Mary research paper,

Acoustic Enhancement of Polymer/ZnO Nanorod Photovoltaic Device Performance by Safa Shoaee, Joe Briscoe, James R. Durrant, Steve Dunn. Article first published online: 6 NOV 2013 DOI: 10.1002/adma.201303304
© 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim

This paper is behind a paywall.