Tag Archives: Will Hughes

Nucleic acid-based memory storage

We’re running out of memory. To be more specific, there are two problems: the supply of silicon and a limit to how much silicon-based memory can store. An April 27, 2016 news item on Nanowerk announces a nucleic acid-based approach to solving the memory problem,

A group of Boise State [Boise State University in Idaho, US] researchers, led by associate professor of materials science and engineering and associate dean of the College of Innovation and Design Will Hughes, is working toward a better way to store digital information using nucleic acid memory (NAM).

An April 25, 2016 Boise State University news release, which originated the news item, expands on the theme of computer memory and provides more details about the approach,

It’s no secret that as a society we generate vast amounts of data each year. So much so that the 30 billion watts of electricity used annually by server farms today is roughly equivalent to the output of 30 nuclear power plants.

And the demand keeps growing. The global flash memory market is predicted to reach $30.2 billion this year, potentially growing to $80.3 billion by 2025. Experts estimate that by 2040, the demand for global memory will exceed the projected supply of silicon (the raw material used to store flash memory). Furthermore, electronic memory is rapidly approaching its fundamental size limits because of the difficulty in storing electrons in small dimensions.

Hughes, with post-doctoral researcher Reza Zadegan and colleagues Victor Zhirnov (Semiconductor Research Corporation), Gurtej Sandhun (Micron Technology Inc.) and George Church (Harvard University), is looking to DNA molecules to solve the problem. Nucleic acid — the “NA” in “DNA” — far surpasses electronic memory in retention time, according to the researchers, while also providing greater information density and energy of operation.

Their conclusions are outlined in an invited commentary in the prestigious journal Nature Materials published earlier this month.

“DNA is the data storage material of life in general,” said Hughes. “Because of its physical and chemical properties, it also may become the data storage material of our lives.” It may sound like science fiction, but Hughes will participate in an invitation-only workshop this month at the Intelligence Advanced Research Projects Activity (IARPA) Agency to envision a portable DNA hard drive that would have 500 Terabytes of searchable data – that’s about the the size of the Library of Congress Web Archive.

“When information bits are encoded into polymer strings, researchers and manufacturers can manage and manipulate physical, chemical and biological information with standard molecular biology techniques,” the paper [in Nature Materials?] states.

Cost-competitive technologies to read and write DNA could lead to real-world applications ranging from artificial chromosomes, digital hard drives and information-management systems, to a platform for watermarking and tracking genetic content or next-generation encryption tools that necessitate physical rather than electronic embodiment.

Here’s how it works. Current binary code uses 0’s and 1’s to represent bits of information. A computer program then accesses a specific decoder to turn the numbers back into usable data. With nucleic acid memory, 0’s and 1’s are replaced with the nucleotides A, T, C and G. Known as monomers, they are covalently bonded to form longer polymer chains, also known as information strings.

Because of DNA’s superior ability to store data, DNA can contain all the information in the world in a small box measuring 10 x 10 x 10 centimeters cubed. NAM could thus be used as a sustainable time capsule for massive, scientific, financial, governmental, historical, genealogical, personal and genetic records.

Better yet, DNA can store digital information for a very long time – thousands to millions of years. Currently, usable information has been extracted from DNA in bones that are 700,000 years old, making nucleic acid memory a promising archival material. And nucleic acid memory uses 100 million times less energy than storing data electronically in flash, and the data can live on for generations.

At Boise State, Hughes and Zadegan are examining DNA’s stability under extreme conditions. DNA strands are subjected to temperatures varying from negative 20 degrees Celsius to 100 degrees Celsius, and to a variety of UV exposures to see if they can still retain their information. What they’re finding is that much less information is lost with NAM than with the current state of the industry.

Here’s a link to and a citation for the Nature Materials paper,

Nucleic acid memory by Victor Zhirnov, Reza M. Zadegan, Gurtej S. Sandhu, George M. Church, & William L. Hughes. Nature Materials 15, 366–370 (2016)  doi:10.1038/nmat4594 Published online 23 March 2016

This paper is behind a paywall.

Boise (Idaho) State University’s free podcasts on nano and more

I appreciate the self-deprecating humour in this Dec. 16, 2011 news item on Nanowerk,

Boise State University (BSU) recently began a campaign, Beyond The Blue, to bring deserved awareness to their excellent academic programs, (as opposed to their better know football team and blue astroturf,) and is hosting a series of fascinating podcasts spotlighting some of the interesting work happening now.

The two podcasts mentioned in the Nanowerk news item were about bionanotechnology and nanomedicine, respectively.

Dr. [Will] Hughes is an assistant professor of Materials Science & Engineering at Boise State University, as well as an affiliate faculty and research council member of the Mountain States Tumor & Medical Research Institute at St Luke’s Regional Medical Center in Boise, Idaho.

From a biological perspective, DNA is the language for life. But what may be less widely known is DNA’s potential as a programmable building block at the nanoscale. In this podcast, Hughes discusses DNA’s potential as an engineering material for building structural scaffolds for nanoelectronic devices and biochemical tools for diagnosing disease.

The second featured podcast,

Dr. [Cheryl] Jorcyk is a professor in the Department of Biological Sciences. Her research focuses on the molecular mechanisms of cancer progression, including breast cancer and prostate cancer.

The statistics are sobering: 1 in 8 women will get breast cancer, a devastating disease that can metastasize to the liver, lungs, brain and bone. [emphasis mine] In this podcast, Jorcyk discusses how breast cancer develops and spreads, current therapies, the challenges involved in a finding a cure, and her research program.

That statistic is misleading. Your chances of contracting breast cancer increase significantly with age. In order to get a statistic of one in eight, they have to aggregate the statistics from a range of age groups. Your chances are much lower in your 20s than they are in your 50s or 80s, in short, your chances of contracting breast cancer depend on your age.