I pricked up my ears when I saw the word ‘analogy’. As a writer, I tend to be quite interested in analogies and metaphors, especially as they relate to science. I certainly never expected to find an analogy established by mathematical rigour—it never occurred to the poet in my soul. Thankfully, mathematicians at MIT (Massachusetts Institute of Technology) were not constrained by my lack of imagination. From the Dec. 8, 2011 news item written by Denise Brehm on Nanowerk,
Using a new mathematical methodology, researchers at MIT have created a scientifically rigorous analogy that shows the similarities between the physical structure of spider silk and the sonic structure of a melody, proving that the structure of each relates to its function in an equivalent way.
The step-by-step comparison begins with the primary building blocks of each item — an amino acid and a sound wave — and moves up to the level of a beta sheet nanocomposite (the secondary structure of a protein consisting of repeated hierarchical patterns) and a musical riff (a repeated pattern of notes or chords). The study explains that structural patterns are directly related to the functional properties of lightweight strength in the spider silk and, in the riff, sonic tension that creates an emotional response in the listener.
The Dec. 8, 2011 news release at MIT goes on to explain,
While likening spider silk to musical composition may appear to be more novelty than breakthrough, the methodology behind it represents a new approach to comparing research findings from disparate scientific fields. Such analogies could help engineers develop materials that make use of the repeating patterns of simple building blocks found in many biological materials that, like spider silk, are lightweight yet extremely failure-resistant. The work also suggests that engineers may be able to gain new insights into biological systems through the study of the structure-function relationships found in music and other art forms.
The MIT researchers — David Spivak, a postdoc in the Department of Mathematics, Associate Professor Markus Buehler of the Department of Civil and Environmental Engineering (CEE) and CEE graduate student Tristan Giesa — published their findings in the December issue of BioNanoScience.
Here’s part of how they developed the analogy between spider silk and music using mathematics (from the MIT news release),
They created the analogy using ontology logs, or “ologs,” a concept introduced about a year ago by Spivak, who specializes in a branch of mathematics called category theory. Ologs provide an abstract means for categorizing the general properties of a system — be it a material, mathematical concept or phenomenon — and showing inherent relationships between function and structure.
To build the ologs, the researchers used information from Buehler’s previous studies of the nanostructure of spider silk and other biological materials.
“There is mounting evidence that similar patterns of material features at the nanoscale, such as clusters of hydrogen bonds or hierarchical structures, govern the behavior of materials in the natural environment, yet we couldn’t mathematically show the analogy between different materials,” Buehler says. “The olog lets us compile information about how materials function in a mathematically rigorous way and identify those patterns that are universal to a very broad class of materials. Its potential for engineering the built environment — in the design of new materials, structures or infrastructure — is immense.”
“This work is very exciting because it brings forth an approach founded on category theory to bridge music (and potentially other aspects of the fine arts) to a new field of materiomics,” says Associate Professor of Biomedical Engineering Joyce Wong of Boston University, a biomaterials scientist and engineer, as well as a musician. “This approach is particularly appropriate for the hierarchical design of proteins, as they show in the silk example. What is particularly exciting is the opportunity to reveal new relationships between seemingly disparate fields with the aim of improving materials engineering and design.”
I always like to have a visual,
You can get more details from either the Nanowerk website or the MIT website.
Since it’s a Friday I thought I’d include a video of a song about spiderwebs and found this on YouTube,
Tags: bionanotechnology, David Spivak, Denise Brehm, Joyce Wong, Lelia Broussard, Markus Buehler, Massachusetts Institute of Technology, materiomics, mathematics, MIT, ologs, ontology logs, Tristan Giesa