Category Archives: writing

Health/science journalists/editors: deadline is March 22, 2024 for media boot camp in Boston, Massachusetts

A February 14, 2023 Broad Institute news release presents an exciting opportunity for health/science journalists and editors,

The Broad Institute of MIT [Massachusetts Institute of Technology] and Harvard is now accepting applications for its 2024 Media Boot Camp.

This annual program connects health/science journalists and editors with faculty from the Broad Institute, Massachusetts Institute of Technology, Harvard University, and Harvard’s teaching hospitals for a two-day event exploring the latest advances in genomics and biomedicine. Journalists will explore possible future storylines, gain fundamental background knowledge, and build relationships with researchers. The program format includes presentations, discussions, and lab tours.

The 2024 Media Boot Camp will take place in person at the Broad Institute in Cambridge, MA on Thursday, May 16 and Friday, May 17 (with an evening welcome reception on Wednesday, May 15).

APPLICATION DEADLINE IS FRIDAY, MARCH 22 (5:00 PM US EASTERN TIME).

2024 Boot Camp topics include:

  • Gene editing
  • New approaches for therapeutic delivery  
  • Cancer biology, drug development
  • Data sciences, machine learning
  • Neurobiology (stem cell models of psychiatric disorders)
  • Antibiotic resistance, microbial biology
  • Medical and population genetics, genomic medicine

Current speakers include: Mimi Bandopadhayay, Clare Bernard,Roby Bhattacharyya, Todd Golub, Laura Kiessling, Eric Lander,David Liu, Ralda Nehme,Heidi Rehm, William Sellers, Feng Zhang, with potentially more to come.

This Media Boot Camp is an educational offering. All presentations are on-background.

Hotel accommodations and meals during the program will be provided by the Broad Institute. Attendees must cover travel costs to and from Boston.

Application Process

By Friday, March 22 [2024] (5:00 PM US Eastern time [2 pm PT]), please send at least one paragraph describing your interest in the program and how you hope it will benefit your reporting, as well as three recent news clips, to David Cameron, Director of External Communications, dcameron@broadinstitute.org

Please contact David at dcameron@broadinstitute.org, or 617-714-7184 with any questions.

I couldn’t find details about eligibility, that said, I wish you good luck with your ‘paragraph and three recent clips’ submission.

FrogHeart’s 2023 comes to an end as 2024 comes into view

My personal theme for this last year (2023) and for the coming year was and is: catching up. On the plus side, my 2023 backlog (roughly six months) to be published was whittled down considerably. On the minus side, I start 2024 with a backlog of two to three months.

2023 on this blog had a lot in common with 2022 (see my December 31, 2022 posting), which may be due to what’s going on in the world of emerging science and technology or to my personal interests or possibly a bit of both. On to 2023 and a further blurring of boundaries:

Energy, computing and the environment

The argument against paper is that it uses up resources, it’s polluting, it’s affecting the environment, etc. Somehow the part where electricity which underpins so much of our ‘smart’ society does the same thing is left out of the discussion.

Neuromorphic (brainlike) computing and lower energy

Before launching into the stories about lowering energy usage, here’s an October 16, 2023 posting “The cost of building ChatGPT” that gives you some idea of the consequences of our insatiable desire for more computing and more ‘smart’ devices,

In its latest environmental report, Microsoft disclosed that its global water consumption spiked 34% from 2021 to 2022 (to nearly 1.7 billion gallons , or more than 2,500 Olympic-sized swimming pools), a sharp increase compared to previous years that outside researchers tie to its AI research. [emphases mine]

“It’s fair to say the majority of the growth is due to AI,” including “its heavy investment in generative AI and partnership with OpenAI,” said Shaolei Ren, [emphasis mine] a researcher at the University of California, Riverside who has been trying to calculate the environmental impact of generative AI products such as ChatGPT.

Why it matters: Microsoft’s five WDM [West Des Moines in Iowa] data centers — the “epicenter for advancing AI” — represent more than $5 billion in investments in the last 15 years.

Yes, but: They consumed as much as 11.5 million gallons of water a month for cooling, or about 6% of WDM’s total usage during peak summer usage during the last two years, according to information from West Des Moines Water Works.

The focus is AI but it doesn’t take long to realize that all computing has energy and environmental costs. I have more about Ren’s work and about water shortages in the “The cost of building ChatGPT” posting.

This next posting would usually be included with my other art/sci postings but it touches on the issues. My October 13, 2023 posting about Toronto’s Art/Sci Salon events, in particular, there’s the Streaming Carbon Footprint event (just scroll down to the appropriate subhead). For the interested, I also found this 2022 paper “The Carbon Footprint of Streaming Media:; Problems, Calculations, Solutions” co-authored by one of the artist/researchers (Laura U. Marks, philosopher and scholar of new media and film at Simon Fraser University) who presented at the Toronto event.

I’m late to the party; Thomas Daigle posted a January 2, 2020 article about energy use and our appetite for computing and ‘smart’ devices for the Canadian Broadcasting Corporation’s online news,

For those of us binge-watching TV shows, installing new smartphone apps or sharing family photos on social media over the holidays, it may seem like an abstract predicament.

The gigabytes of data we’re using — although invisible — come at a significant cost to the environment. Some experts say it rivals that of the airline industry. 

And as more smart devices rely on data to operate (think internet-connected refrigerators or self-driving cars), their electricity demands are set to skyrocket.

“We are using an immense amount of energy to drive this data revolution,” said Jane Kearns, an environment and technology expert at MaRS Discovery District, an innovation hub in Toronto.

“It has real implications for our climate.”

Some good news

Researchers are working on ways to lower the energy and environmental costs, here’s a sampling of 2023 posts with an emphasis on brainlike computing that attest to it,

If there’s an industry that can make neuromorphic computing and energy savings sexy, it’s the automotive indusry,

On the energy front,

Most people are familiar with nuclear fission and some its attendant issues. There is an alternative nuclear energy, fusion, which is considered ‘green’ or greener anyway. General Fusion is a local (Vancouver area) company focused on developing fusion energy, alongside competitors from all over the planet.

Part of what makes fusion energy attractive is that salt water or sea water can be used in its production and, according to that December posting, there are other applications for salt water power,

More encouraging developments in environmental science

Again, this is a selection. You’ll find a number of nano cellulose research projects and a couple of seaweed projects (seaweed research seems to be of increasing interest).

All by myself (neuromorphic engineering)

Neuromorphic computing is a subset of neuromorphic engineering and I stumbled across an article that outlines the similarities and differences. My ‘summary’ of the main points and a link to the original article can be found here,

Oops! I did it again. More AI panic

I included an overview of the various ‘recent’ panics (in my May 25, 2023 posting below) along with a few other posts about concerning developments but it’s not all doom and gloom..

Governments have realized that regulation might be a good idea. The European Union has a n AI act, the UK held an AI Safety Summit in November 2023, the US has been discussing AI regulation with its various hearings, and there’s impending legislation in Canada (see professor and lawyer Michael Geist’s blog for more).

A long time coming, a nanomedicine comeuppance

Paolo Macchiarini is now infamous for his untested, dangerous approach to medicine. Like a lot of people, I was fooled too as you can see in my August 2, 2011 posting, “Body parts nano style,”

In early July 2011, there were reports of a new kind of transplant involving a body part made of a biocomposite. Andemariam Teklesenbet Beyene underwent a trachea transplant that required an artificial windpipe crafted by UK experts then flown to Sweden where Beyene’s stem cells were used to coat the windpipe before being transplanted into his body.

It is an extraordinary story not least because Beyene, a patient in a Swedish hospital planning to return to Eritrea after his PhD studies in Iceland, illustrates the international cooperation that made the transplant possible.

The scaffolding material for the artificial windpipe was developed by Professor Alex Seifalian at the University College London in a landmark piece of nanotechnology-enabled tissue engineering. …

Five years later I stumbled across problems with Macchiarini’s work as outlined in my April 19, 2016 posting, “Macchiarini controversy and synthetic trachea transplants (part 1 of 2)” and my other April 19, 2016 posting, “Macchiarini controversy and synthetic trachea transplants (part 2 of 2)“.

This year, Gretchen Vogel (whose work was featured in my 2016 posts) has written a June 21, 2023 update about the Macchiarini affair for Science magazine, Note: Links have been removed,

Surgeon Paolo Macchiarini, who was once hailed as a pioneer of stem cell medicine, was found guilty of gross assault against three of his patients today and sentenced to 2 years and 6 months in prison by an appeals court in Stockholm. The ruling comes a year after a Swedish district court found Macchiarini guilty of bodily harm in two of the cases and gave him a suspended sentence. After both the prosecution and Macchiarini appealed that ruling, the Svea Court of Appeal heard the case in April and May. Today’s ruling from the five-judge panel is largely a win for the prosecution—it had asked for a 5-year sentence whereas Macchiarini’s lawyer urged the appeals court to acquit him of all charges.

Macchiarini performed experimental surgeries on the three patients in 2011 and 2012 while working at the renowned Karolinska Institute. He implanted synthetic windpipes seeded with stem cells from the patients’ own bone marrow, with the hope the cells would multiply over time and provide an enduring replacement. All three patients died when the implants failed. One patient died suddenly when the implant caused massive bleeding just 4 months after it was implanted; the two others survived for 2.5 and nearly 5 years, respectively, but suffered painful and debilitating complications before their deaths.

In the ruling released today, the appeals judges disagreed with the district court’s decision that the first two patients were treated under “emergency” conditions. Both patients could have survived for a significant length of time without the surgeries, they said. The third case was an “emergency,” the court ruled, but the treatment was still indefensible because by then Macchiarini was well aware of the problems with the technique. (One patient had already died and the other had suffered severe complications.)

A fictionalized tv series ( part of the Dr. Death anthology series) based on Macchiarini’s deceptions and a Dr. Death documentary are being broadcast/streamed in the US during January 2024. These come on the heels of a November 2023 Macchiarini documentary also broadcast/streamed on US television.

Dr. Death (anthology), based on the previews I’ve seen, is heavily US-centric, which is to be expected since Adam Ciralsky is involved in the production. Ciralsky wrote an exposé about Macchiarini for Vanity Fair published in 2016 (also featured in my 2016 postings). From a December 20, 2023 article by Julie Miller for Vanity Fair, Note: A link has been removed,

Seven years ago [2016], world-renowned surgeon Paolo Macchiarini was the subject of an ongoing Vanity Fair investigation. He had seduced award-winning NBC producer Benita Alexander while she was making a special about him, proposed, and promised her a wedding officiated by Pope Francis and attended by political A-listers. It was only after her designer wedding gown was made that Alexander learned Macchiarini was still married to his wife, and seemingly had no association with the famous names on their guest list.

Vanity Fair contributor Adam Ciralsky was in the midst of reporting the story for this magazine in the fall of 2015 when he turned to Dr. Ronald Schouten, a Harvard psychiatry professor. Ciralsky sought expert insight into the kind of fabulist who would invent and engage in such an audacious lie.

“I laid out the story to him, and he said, ‘Anybody who does this in their private life engages in the same conduct in their professional life,” recalls Ciralsky, in a phone call with Vanity Fair. “I think you ought to take a hard look at his CVs.”

That was the turning point in the story for Ciralsky, a former CIA lawyer who soon learned that Macchiarini was more dangerous as a surgeon than a suitor. …

Here’s a link to Ciralsky’s original article, which I described this way, from my April 19, 2016 posting (part 2 of the Macchiarini controversy),

For some bizarre frosting on this disturbing cake (see part 1 of the Macchiarini controversy and synthetic trachea transplants for the medical science aspects), a January 5, 2016 Vanity Fair article by Adam Ciralsky documents Macchiarini’s courtship of an NBC ([US] National Broadcasting Corporation) news producer who was preparing a documentary about him and his work.

[from Ciralsky’s article]

“Macchiarini, 57, is a magnet for superlatives. He is commonly referred to as “world-renowned” and a “super-surgeon.” He is credited with medical miracles, including the world’s first synthetic organ transplant, which involved fashioning a trachea, or windpipe, out of plastic and then coating it with a patient’s own stem cells. That feat, in 2011, appeared to solve two of medicine’s more intractable problems—organ rejection and the lack of donor organs—and brought with it major media exposure for Macchiarini and his employer, Stockholm’s Karolinska Institute, home of the Nobel Prize in Physiology or Medicine. Macchiarini was now planning another first: a synthetic-trachea transplant on a child, a two-year-old Korean-Canadian girl named Hannah Warren, who had spent her entire life in a Seoul hospital. … “

Other players in the Macchiarini story

Pierre Delaere, a trachea expert and professor of head and neck surgery at KU Leuven (a university in Belgium) was one of the first to draw attention to Macchiarini’s dangerous and unethical practices. To give you an idea of how difficult it was to get attention for this issue, there’s a September 1, 2017 article by John Rasko and Carl Power for the Guardian illustrating the issue. Here’s what they had to say about Delaere and other early critics of the work, Note: Links have been removed,

Delaere was one of the earliest and harshest critics of Macchiarini’s engineered airways. Reports of their success always seemed like “hot air” to him. He could see no real evidence that the windpipe scaffolds were becoming living, functioning airways – in which case, they were destined to fail. The only question was how long it would take – weeks, months or a few years.

Delaere’s damning criticisms appeared in major medical journals, including the Lancet, but weren’t taken seriously by Karolinska’s leadership. Nor did they impress the institute’s ethics council when Delaere lodged a formal complaint. [emphases mine]

Support for Macchiarini remained strong, even as his patients began to die. In part, this is because the field of windpipe repair is a niche area. Few people at Karolinska, especially among those in power, knew enough about it to appreciate Delaere’s claims. Also, in such a highly competitive environment, people are keen to show allegiance to their superiors and wary of criticising them. The official report into the matter dubbed this the “bandwagon effect”.

With Macchiarini’s exploits endorsed by management and breathlessly reported in the media, it was all too easy to jump on that bandwagon.

And difficult to jump off. In early 2014, four Karolinska doctors defied the reigning culture of silence [emphasis mine] by complaining about Macchiarini. In their view, he was grossly misrepresenting his results and the health of his patients. An independent investigator agreed. But the vice-chancellor of Karolinska Institute, Anders Hamsten, wasn’t bound by this judgement. He officially cleared Macchiarini of scientific misconduct, allowing merely that he’d sometimes acted “without due care”.

For their efforts, the whistleblowers were punished. [emphasis mine] When Macchiarini accused one of them, Karl-Henrik Grinnemo, of stealing his work in a grant application, Hamsten found him guilty. As Grinnemo recalls, it nearly destroyed his career: “I didn’t receive any new grants. No one wanted to collaborate with me. We were doing good research, but it didn’t matter … I thought I was going to lose my lab, my staff – everything.”

This went on for three years until, just recently [2017], Grinnemo was cleared of all wrongdoing.

It is fitting that Macchiarini’s career unravelled at the Karolinska Institute. As the home of the Nobel prize in physiology or medicine, one of its ambitions is to create scientific celebrities. Every year, it gives science a show-business makeover, picking out from the mass of medical researchers those individuals deserving of superstardom. The idea is that scientific progress is driven by the genius of a few.

It’s a problematic idea with unfortunate side effects. A genius is a revolutionary by definition, a risk-taker and a law-breaker. Wasn’t something of this idea behind the special treatment Karolinska gave Macchiarini? Surely, he got away with so much because he was considered an exception to the rules with more than a whiff of the Nobel about him. At any rate, some of his most powerful friends were themselves Nobel judges until, with his fall from grace, they fell too.

The September 1, 2017 article by Rasko and Power is worth the read if you have the interest and the time. And, Delaere has written up a comprehensive analysis, which includes basic information about tracheas and more, “The Biggest Lie in Medical History” 2020, PDF, 164 pp., Creative Commons Licence).

I also want to mention Leonid Schneider, science journalist and molecular cell biologist, whose work the Macchiarini scandal on his ‘For Better Science’ website was also featured in my 2016 pieces. Schneider’s site has a page titled, ‘Macchiarini’s trachea transplant patients: the full list‘ started in 2017 and which he continues to update with new information about the patients. The latest update was made on December 20, 2023.

Promising nanomedicine research but no promises and a caveat

Most of the research mentioned here is still in the laboratory. i don’t often come across work that has made its way to clinical trials since the focus of this blog is emerging science and technology,

*If you’re interested in the business of neurotechnology, the July 17, 2023 posting highlights a very good UNESCO report on the topic.

Funky music (sound and noise)

I have couple of stories about using sound for wound healing, bioinspiration for soundproofing applications, detecting seismic activity, more data sonification, etc.

Same old, same old CRISPR

2023 was relatively quiet (no panics) where CRISPR developments are concerned but still quite active.

Art/Sci: a pretty active year

I didn’t realize how active the year was art/sciwise including events and other projects until I reviewed this year’s postings. This is a selection from 2023 but there’s a lot more on the blog, just use the search term, “art/sci,” or “art/science,” or “sciart.”

While I often feature events and projects from these groups (e.g., June 2, 2023 posting, “Metacreation Lab’s greatest hits of Summer 2023“), it’s possible for me to miss a few. So, you can check out Toronto’s Art/Sci Salon’s website (strong focus on visual art) and Simon Fraser University’s Metacreation Lab for Creative Artificial Intelligence website (strong focus on music).

My selection of this year’s postings is more heavily weighted to the ‘writing’ end of things.

Boundaries: life/nonlife

Last year I subtitled this section, ‘Aliens on earth: machinic biology and/or biological machinery?” Here’s this year’s selection,

Canada’s 2023 budget … military

2023 featured an unusual budget where military expenditures were going to be increased, something which could have implications for our science and technology research.

Then things changed as Murray Brewster’s November 21, 2023 article for the Canadian Broadcasting Corporation’s (CBC) news online website comments, Note: A link has been removed,

There was a revelatory moment on the weekend as Defence Minister Bill Blair attempted to bridge the gap between rhetoric and reality in the Liberal government’s spending plans for his department and the Canadian military.

Asked about an anticipated (and long overdue) update to the country’s defence policy (supposedly made urgent two years ago by Russia’s full-on invasion of Ukraine), Blair acknowledged that the reset is now being viewed through a fiscal lens.

“We said we’re going to bring forward a new defence policy update. We’ve been working through that,” Blair told CBC’s Rosemary Barton Live on Sunday.

“The current fiscal environment that the country faces itself does require (that) that defence policy update … recognize (the) fiscal challenges. And so it’ll be part of … our future budget processes.”

One policy goal of the existing defence plan, Strong, Secure and Engaged, was to require that the military be able to concurrently deliver “two sustained deployments of 500 [to] 1,500 personnel in two different theaters of operation, including one as a lead nation.”

In a footnote, the recent estimates said the Canadian military is “currently unable to conduct multiple operations concurrently per the requirements laid out in the 2017 Defence Policy. Readiness of CAF force elements has continued to decrease over the course of the last year, aggravated by decreasing number of personnel and issues with equipment and vehicles.”

Some analysts say they believe that even if the federal government hits its overall budget reduction targets, what has been taken away from defence — and what’s about to be taken away — won’t be coming back, the minister’s public assurances notwithstanding.

10 years: Graphene Flagship Project and Human Brain Project

Graphene and Human Brain Project win biggest research award in history (& this is the 2000th post)” on January 28, 2013 was how I announced the results of what had been a a European Union (EU) competition that stretched out over several years and many stages as projects were evaluated and fell to the wayside or were allowed onto the next stage. The two finalists received €1B each to be paid out over ten years.

Future or not

As you can see, there was plenty of interesting stuff going on in 2023 but no watershed moments in the areas I follow. (Please do let me know in the Comments should you disagree with this or any other part of this posting.) Nanotechnology seems less and less an emerging science/technology in itself and more like a foundational element of our science and technology sectors. On that note, you may find my upcoming (in 2024) post about a report concerning the economic impact of its National Nanotechnology Initiative (NNI) from 2002 to 2022 of interest.

Following on the commercialization theme, I have noticed an increase of interest in commercializing brain and brainlike engineering technologies, as well as, more discussion about ethics.

Colonizing the brain?

UNESCO held events such as, this noted in my July 17, 2023 posting, “Unveiling the Neurotechnology Landscape: Scientific Advancements, Innovations and Major Trends—a UNESCO report” and this noted in my July 7, 2023 posting “Global dialogue on the ethics of neurotechnology on July 13, 2023 led by UNESCO.” An August 21, 2023 posting, “Ethical nanobiotechnology” adds to the discussion.

Meanwhile, Australia has been producing some very interesting mind/robot research, my June 13, 2023 posting, “Mind-controlled robots based on graphene: an Australian research story.” I have more of this kind of research (mind control or mind reading) from Australia to be published in early 2024. The Australians are not alone, there’s also this April 12, 2023 posting, “Mind-reading prosthetic limbs” from Germany.

My May 12, 2023 posting, “Virtual panel discussion: Canadian Strategies for Responsible Neurotechnology Innovation on May 16, 2023” shows Canada is entering the discussion. Unfortunately, the Canadian Science Policy Centre (CSPC), which held the event, has not posted a video online even though they have a youtube channel featuring other of their events.

As for neurmorphic engineering, China has produced a roadmap for its research in this area as noted in my March 20, 2023 posting, “A nontraditional artificial synaptic device and roadmap for Chinese research into neuromorphic devices.”

Quantum anybody?

I haven’t singled it out in this end-of-year posting but there is a great deal of interest in quantum computer both here in Canada and elsewhere. There is a 2023 report from the Council of Canadian Academies on the topic of quantum computing in Canada, which I hope to comment on soon.

Final words

I have a shout out for the Canadian Science Policy Centre, which celebrated its 15th anniversary in 2023. Congratulations!

For everyone, I wish peace on earth and all the best for you and yours in 2024!

AI incites hiring of poets

This is not the first time that I’ve come across information such as this. According to a September 28, 2023 posting by Karl Bode for the TechDirt website, companies in Silicon Valley (California, US) are hiring poets (and other writers) to help train AI (artificial intelligence), Note: Links have been removed,

… however much AI hype-men would like to pretend AI makes human beings irrelevant, they remain essential for the underlying illusion and reality to function. As such, a growing number of Silicon Valley companies are increasingly hiring poets, English PHDs, and other writers to write short stories for LLMs [language learning models] to train on in a bid to improve the quality of their electro-mimics:

“A string of job postings from high-profile training data companies, such as Scale AI and Appen, are recruiting poets, novelists, playwrights, or writers with a PhD or master’s degree. Dozens more seek general annotators with humanities degrees, or years of work experience in literary fields. The listings aren’t limited to English: Some are looking specifically for poets and fiction writers in Hindi and Japanese, as well as writers in languages less represented on the internet.”

So it’s clear we still have a long way to go before these technologies actually get anywhere close to matching both the hype and employment apocalypse many predicted. LLMs are effectively mimics that create from what already exists. Since it’s not real artificial intelligence, it’s still not actually capable of true creativity:

“They are trained to reproduce. They are not designed to be great, they try to be as close as possible to what exists,” Fabricio Goes, who teaches informatics at the University of Leicester, told Rest of World, explaining a popular stance among AI researchers. “So, by design, many people argue that those systems are not creative.”

The problem remains that while the underlying technology will continuously improve, the folks rushing to implement it without thinking likely won’t. Most seem dead set on using AI primarily as a bludgeon against labor in the hopes the public won’t notice the drop in quality, and professional writers, editors, and creatives won’t mind increasingly lower pay and tenuous position in the food chain.

In the last paragraph, Bode appears to be alluding to the Writers Guild of America strike (known popularly as the Hollywood writers strike), which ended on September 26, 2023 (for more details, see this September 26, 2023 article by Samantha Delouya for CNN).

Four years ago, I used this head “Ghosts, mechanical turks, and pseudo-AI (artificial intelligence)—Is it all a con game?” for a more in depth look at how AI is overhyped; see my September 24, 2019 posting.

October 31, 2023 data analysis and visualization workshop for science writers

Thanks to the Science Media Centre of Canada for the notice about this upcoming workshop for science writers, (from the Data Analysis and Visualization Tools for Science Writers page on eventbrite.com), Note: There is a fee of $125 (I assume this is US currency) and a limited number of discounts are available (keep reading either here or on the event page for details about the discounts),

[downloaded from https://www.eventbrite.com/e/data-analysis-and-visualization-tools-for-science-writers-tickets-692049688247]

Also from the event page,

This workshop will focus on reporting & producing data stories about science topics, highlighting free tools for analysis & visualization.

Date and time

Tuesday, October 31 · 12:30 – 2pm PDT

Location

Online

Refund Policy

Contact the organizer to request a refund.Eventbrite’s fee is nonrefundable.

About this event

1 hour 30 minutes Mobile eTicket

Science writers are used to encountering data, whether we’re reading through dense scientific papers or trying to figure out what a statistic means for our readers. But sometimes, datasets themselves can be sources for stories—and they have led to some of the most widely read science stories of the last few years, from El Pais’ visualization of coronavirus spread to ProPublica’s investigation of burning sugar cane. Datasets can help us make complex topics accessible, visualize patterns from research, or even investigate instances of wrongdoing.

A science writer interested in pursuing stories like these could find a wide variety of resources to help them get started on a data project. But the growing data journalism field can be overwhelming: you might not be sure how to pick an initial project, which online course to try, which tools to use, or whether you need to learn how to code first. (Spoiler alert: you don’t!)

This 90-minute hands-on workshop from The Open Notebook, building on the instructor’s TON article about this topic [TON = The Open Notebook], will provide a crash course in data reporting basics. It’s designed for science writers who are interested in pursuing data stories but aren’t quite sure how to get started, and for editors who are interested in working with writers on these stories.

You’ll get an introduction to all of the steps of reporting and producing a data story, from finding story ideas to editing and fact-checking. The workshop will include an interactive tutorial showcasing two common tools that you can start using immediately.

You will learn how to:

Recognize potential data stories on your beat
Search for public datasets that you can use
Use free tools for data analysis and visualization
Work with a data team or independently as a freelancer
Make your data stories accessible

The workshop will be recorded and made available to registered participants for three months following the workshop.

Instructor

Betsy Ladyzhets is an independent science, health, and data journalist focused on COVID-19 and the future of public health. She runs the COVID-19 Data Dispatch, a publication that provides news, resources, and original reporting on COVID-19 data. Recently, she was a journalism fellow at MuckRock, where she contributed to award-winning COVID-19 investigations. She also previously managed the Science & Health vertical at Stacker and volunteered at the COVID Tracking Project. Her freelance work has appeared in Science News, The Atlantic, STAT, FiveThirtyEight, MIT Technology Review, and other national publications.

Registration Fee

The registration fee is $125.

About our discounted rates: Our goal at The Open Notebook is to support the advancement of science journalists around the world. In particular, we want to ensure that the resources we provide are accessible to those who have experienced higher-than-average barriers to entry in our field. A limited number of discounted slots are available on a first-come, first-served basis to individuals who are members of communities that have historically been underrepresented in science journalism or whose economic circumstances would make the full cost of the workshops a financial strain. To use this discount, add the promo code TON_70DISCOUNT for a 70 percent discount. (The promo code box is above the workshops listing on the sign-up page.)

I found out a little more about The Open Notebook, from their About tab Mission page,

Our Mission

The Open Notebook is a 501(c)(3) non-profit organization that is widely regarded as the leading online source of training and educational materials for journalists who cover science. We are dedicated to fostering a supportive, diverse, and inclusive global community that enables reporters and editors who cover science to learn and thrive. Through our comprehensive library of articles on the craft of science journalism and our extensive training and mentoring programs, we empower journalists at all experience levels, around the world, to tell impactful, engaging stories about science.

Why We’re Here

At no other time in human history has the meaning of what constitutes a fact—a valid piece of knowledge—been more at risk than it is today. Journalists’ ability to report stories about science clearly, accurately, and engagingly has never been more critical for public understanding of science and for a well-functioning democracy. Journalists who cover science play a crucial and demanding role in society—they must not only explain the newest advances in scientific research, but also provide critical context and analysis on issues ranging from climate change to infectious disease to artificial intelligence; shed light on the human beings behind the research; and serve as watchdogs to help ensure the continued freedom and integrity of the scientific enterprise.

To fulfill such a role takes skill. And the skills that science journalists need are endangered. Only a fraction of working science journalists are trained in formal journalism programs. And with the shrinking number of traditional staff jobs available, science journalism is fast moving toward a “gig economy” that relies on freelancers to produce work once done by staffers. One effect of that shift is that fewer journalists have the opportunity to master skills through the natural mentoring that takes place in newsrooms. In addition, science journalists who are from historically underrepresented communities face formidable barriers to entry and participation in the field. The Open Notebook is dedicated to helping journalists cultivate fundamental skills necessary for covering science and to helping foster a more inclusive community of voices covering science.

What We Do

Since The Open Notebook was founded in 2010, more than a million people from around the world have visited the site. Thousands of journalists have taken part in our courses, workshops, and mentoring programs. Below is a summary of our major programs.

There you have it.

AI ‘author’ steals another author’s identity

It seems I have not been sufficiently imaginative about how AI can be utilized as an author, from an August 10, 2023 article by Abby Hughes for Canadian Broadcasting Corporation’s (CBC) As It Happens radio programme, Note: A link has been removed,

Author says ‘AI-generated’ books were published under her name. Amazon wouldn’t take them down

Jane Friedman writes and reports on the publishing industry. Recently, five new titles including How to Write and Publish an eBook Quickly and Make Money, were listed under the U.S.-based author’s name on Amazon.

The problem? She didn’t write them.

Friedman believes the books were generated using artificial intelligence (AI) and published under her name by someone else. 

They were removed from the online marketplace earlier this week according to The Guardian, but only after a fight with the publisher

“I was expecting something like this to happen eventually. I just didn’t think I would find myself leading the charge on fraudulent work in my name,” Friedman told As it Happens guest host Peter Armstrong.

A reader, who had been looking for Friedman’s books on Amazon, stumbled upon the suspicious texts and alerted the author.

Friedman says she felt violated and angry after investigating the “substandard” work for herself.

“The books are just bloviating garbage. It was repetitive, like a really bad student essay [and] didn’t have anything really meaningful in it,” says Friedman.

There’s more,

The books were also listed on Goodreads, an online book rating and recommendation site itself owned by Amazon. But Friedman says getting them removed from that site was far easier.

Friedman was able to “reach human beings with critical thinking skills” when she reached out to Goodreads. With Amazon, however, she could only report the issue by filling out a form.

It’s also impossible to reach the person who uploaded the books, she says — only Amazon has that information.

Friedman says if it weren’t for social media pressure and help from members of the Authors Guild advocacy group — which Friedman is a member of — the works fraudulently published under her name might still exist on Amazon.

Shawn Bayern, a law professor at Florida State University, says cases like Friedman’s might become more common, as generative AI grows in popularity.

An Amazon spokesperson told the CBC in an email that they “have clear content guidelines governing which books can be listed for sale and promptly investigate any book when a concern is raised. We welcome author feedback and work directly with authors to address any issues they raise and where we have made an error, we correct it.”

If you have time, the radio segment embedded in the article is 6 mins. 32 secs. and/or there’s the rest of the article with all the bits I’ve left out.

Leaning Out of Windows (LOoW): An Art and Physics Collaboration (2023 book) in Vancouver (Canada)

Be careful not to fall, is a familiar stricture when applied to ‘leaning out of windows’ supplying a frisson of danger to the ‘lean’ but in German, ‘aus dem Fenster lehnen’ or ‘lean out of the window’, is an expression for interdisciplinarity. It’s a nice touch for a book about an art/physics collaboration where it can feel ‘dangerous’ to move so far out of your comfort zone. The book is described this way in its Vancouver (Canada) Public Library catalogue entry,

Art and physics collide in this expansive exploration of how knowledge can be translated across disciplinary communities to activate new aesthetic and scientific perspectives.

Leaning Out of Windows shares findings from a six-year collaboration by a group of artists and physicists exploring the connections and differences between the language they use [emphasis mine], the means by which they develop knowledge, how that knowledge is visualized, and, ultimately, how they seek to understand the universe. Physicists from TRIUMF, Canada’s particle physics accelerator, presented key concepts in the physics of Antimatter, Emergence, and In/visible Forces to artists convened by Emily Carr University of Art + Design; the participants then generated conversations, process drawings, diagrams, field notes, and works of art. The “wondrous back-and-forth” of this process allowed both scientists and artists to, as Koenig [Ingrid Koenig] and Cutler [Randy Lee Cutler] describe, “lean out of our respective fields of inquiry and inhabit the infinite spaces of not knowing.”

From this leaning into uncertainty comes a rich array of work towards furthering the shared project of artists and scientists in shaping cultural understandings of the universe: Otoniya J. Okot Bitek reflects on the invisible forces of power; Jess H. Brewer contemplates emergence, free will, and magic; Mimi Gellman looks at the resonances between Indigenous Knowledge and physics; Jeff Derksen finds Hegelian dialectics within the matter-antimatter process; Sanem Güvenç considers the possibilities of the void; Nirmal Raj ponders the universe’s “special moment of light and visibility” we happen to inhabit; Sadira Rodrigues eschews the artificiality of the lab for a “boring berm of dirt”; and Marina Roy metaphorically turns beams of stable and radioactive gold particles into art of pigments, oils, liquid plastic, and wood. Combined with additional essays, diagrams, and artworks, these texts and artworks live in the intersection of disparate fields that nonetheless share a deep curiosity of the world and our place within it, and a dedication to building and sharing knowledges.

Self-published, “Leaning Out of Windows: An Art and Physics Collaboration” and edited by Ingrid Koenig & Randy Lee Cutler (who also wrote many of the essays) was produced through an entity known as Figure 1 (located in Vancouver). It can be purchased for $45 CAD here on the Figure 1 website or $41.71 (CAD?) on Amazon. (Weirdly, if you look at the back outside cover you’ll see a price of $45 USD.)

Kind of a book

“Leaning” functions as three kinds of books in one package. First, it is documentation for a six year project funded by the Social Sciences and Humanities Research Council of Canada (SSHRC), second, a collection of essays, and, third, a catalogue for three inter-related exhibitions. (Aside: my focus is primarily on the text for an informal book review.)

Like an art exhibition catalogue, this book is printed in a large, awkward to hold format, with shiny (coated) pages. It makes reading the essays and documentation a little challenging but perfect for a picture book/coffee table book where the images are supposed to look good.

I particularly liked the maps for the various phases of the project and the images for phase 1 showing what happens when an image is passed from one artist to the next, without explanation, asking for a new image to be produced and passed on to yet another artist and so on. There is no discussion amongst the artists about the initial impetus (the first artist in the stream of four met with physicists at a science symposium to talk about antimatter).

Ingrid Koenig, Antimatter Process Design (detail), 2017. This diagram shows the process design of five different streams of interactions, mapping out routes for 26 artists and 26 physicists, as well as an experimental class taught by Koenig at Emily Carr University of Art and Design. [downloaded from https://canadianart.ca/features/searching-for-the-language-of-the-universe/]

Unexpectedly, the documentation proved to be a highlight for me. BTW, you can find out more about the Leaning Out of Windows (LOoW) project (e.g. participants, phases, and art/science resources) on its website.

Koenig should be congratulated for getting as much publicity for the book as possible, given the topic and that there are no celebrities involved. CBC gave it a mention (May 8, 2023) on its Books: Leaning Out of Windows webpage. It also got a mention by Dana Gee in a May 12, 2023 ‘Books brief‘ posting on the Vancouver Sun website.

Plus, there were a couple of articles in an art magazine highlighting the art/science project while it was in progress featuring the few images I was about to access online for this project.

A January 6, 2020 article in Canadian Art Magazine by Randy Lee Cutler and Ingrid Koenig introduces the project (Note: I’ll revisit the “metaphor and analogy” mention in this article and throughout the LOoW book later in this post),

The disciplines of art and physics share certain critical perspectives: both deal with how metaphor and analogy inform creative processes. Additionally, artists and physicists address issues of the imagination, creative thinking and communication, and how meaning is made through theoretical research and process-based investigations. There are also important differences in these perspectives. Art brings an appreciation for abstract or non-representational practices. Physics research addresses complex problems relevant to understanding the study of matter and motion through space and time. Physicists also contribute knowledge about how the universe behaves. Together, the achievements of art and physics allow the possibility of a much richer understanding of the nature of reality than each field can contribute individually.

There’s a January 13, 2020 article in Canadian Art Magazine by Perrin Grauer featuring Mimi Gellman, Note: A link has been removed,

Artwork by artist and ECU Associate Professor Mimi Gellman was selected to appear on the cover of the current issue of Canadian Art magazine.

The gleaming, otherworldly image graces the magazine’s issue on antimatter —a subject which “presents a mirror world of abstract phenomena: time reversals, mutual annihilation, cosmic rays, cloud chambers, an infinite sea of sub-atomic particles that parallels our ‘real’ world of matter,” according to the issue’s editors.

Mimi describes her work as approaching some of the affinities between the biological, the perceptual, the cultural and the astronomical.

“My drawings do not explore the exterior world we perceive but rather what I call the ‘architecture of consciousness’ which permits us to perceive it,” she says.

“Recalling astronomical diagrams and reflecting the mixture of hybrid cultural worldviews in my background, they reveal deep similarities between the dimension explored by sub-atomic physics and the implicit interiority of contemporary art.”

I’m sorry I never saw any announcements for the project exhibitions, all of which seemed to have taken place at the Emily Carr University of Art + Design. There were three concepts each explored in three exhibitions, with different artists each time, titled: Antimatter, Emergence, and In/visible Forces, respectively.

A bouquet or two and a few nitpicks

Randy Lee Cutler and Ingrid Koenig have a wonderful quote from Karen Barad, physicist and philosopher, in their essay titled, “Collaborative Research between Artists and Physicists,”

Barad introduces the concept of intra-action and the fluidity of materialization through our bodily entanglements—through intra-action our bodies remain entangled with those around us. “Not only subjects but also objects are permeated through and through with their entangled kin, the other is not just in one’s skin, but in one’s bones, in one’s belly in one’s heart, in one’s nucleus, in one’s past and future.This is a true for electrons as it is for brittlestars as it is for the differentially constituted human.” As Barad asks herself, “How do I know where my physics begins and ends?” … [p. 13]

To the left of the page is a black and white photograph of entangled cables captioned, “GRIFFIN (Gamma Ray Infrastructure for Fundamental Investigations of Nuclei- TRIUMF.” It’s a nice touch and points to the difficulty of ‘illustrating’ or producing visual art in response to physics ideas such as quantum entanglement, something Einstein called, ‘spooky action at a distance’. From the Quantum entanglement Wikipedia entry, Note: Links have been removed,

Quantum entanglement is the phenomenon that occurs when a group of particles are generated, interact, or share spatial proximity in a way such that the quantum state of each particle of the group cannot be described independently of the state of the others [[emphasis mine], including when the particles are separated by a large distance [emphasis mine]. The topic of quantum entanglement is at the heart of the disparity between classical and quantum physics: entanglement is a primary feature of quantum mechanics not present in classical mechanics.[1]

Some of the essays

One essay that stood out in LOoW, was “A Boring Berm of Dirt’ (pp. 141-7) by Sadira Rodrigues. She notes that dirt and soil are not the same; one is dead (dirt) and the other is living (soil) and that the berm has an important role at TRIUMF. If you want a more specific discussion of the difference between dirt and soil, see David Beaulieu’s February 23, 2023 essay (Soil vs. Dirt: What’s the Difference?) on The Spruce website.

Rodrigues’ essay (part of the Emergence concept) situates the work physically (word play alert: physics/physically) whereas all of the other work is based on ideas.

In “Boring Berm … ,” radioactivity is mentioned, a term which is largely taboo these days due its association with poisoning, bombs, and death. The eassy goes into fascinating detail about TRIUMF’s underground facility and how the facility deals with its nuclear waste and the role that the berm plays. (On a more fanciful note, the danger in the title of the book is given another dimension in this essay focused on nuclear topics.) Regardless, the essay was definitely an eye-opener.

Aside: The institution has been rebranded from: TRIUMF (Canada’s National Laboratory for Particle and Nuclear Physics) to: TRIUMF (Canada’s national particle accelerator centre). You can find a reference to the ‘nuclear’ name in my October 2, 2018 posting although the name was already changed, probably in the early to mid-2010s. There is no mention of the ‘nuclear’ name in TRIUMF’s Wikipedia entry, accessed August 22, 2023.

Gellman and language

Mimi Gellman’s essay, “Crossing No Divide: Mapping Affinities in Art and Science” evokes unity, as can be seen in the title. She’s one of the more ‘lyrical’ writers,

There is a place in our imagination where east or west, or large or small, or any other opposites cease to be productive contradictions. As an artist and educator, I have become interested in the non-binary and resonance between Indigenous Knowledge and physics, between art and science, and between traditional ways of considering cognition and thinking with the hand. [p. 33]

This is how Gellman is described for the January 13, 2020 article in Canadian Art Magazine, which is archived on the Emily Carr University of Art + Design (ECUAD) website,

Mimi Gellman is an Anishinaabe/Ashkenazi (Ojibway-Jewish Métis) visual artist and educator with a multi-streamed practice in architectural glass and conceptual installation. She is currently an Associate Professor in the Faculty of Culture + Community at Emily Carr University of Art + Design in Vancouver, Canada, and is completing her research praxis PhD in Cultural Studies at Queen’s University on the metaphysics of Indigenous mapping.

She highlights some interesting observations about language and thinking,

The Ojibwe language, Anishinaabemowin, like many Indigenous languages is verb-based in contrast with Western languages’ noun-based constructions and these have deep implications for the development of one’s worldview. …

I suspect anyone who speaks more than one language can testify to the observation that language affects one’s worldview. More academically, it’s called linguistic relativity or the Sapir-Whorf hypothesis. I find it hard to believe that it’s considered a controversial idea but here goes from the Linguistic relativity Wikipedia entry, Note: Links have been removed,

The idea of linguistic relativity, also known as the Sapir–Whorf hypothesis /səˌpɪər ˈhwɔːrf/ sə-PEER WHORF, the Whorf hypothesis, or Whorfianism, is a principle suggesting that the structure of a language influences its speakers’ worldview or cognition, and thus individuals’ languages determine or shape their perceptions of the world.[1]

The hypothesis has long been controversial, and many different, often contradictory variations have existed throughout its history.[2] The strong hypothesis of linguistic relativity, now referred to as linguistic determinism, says that language determines thought and that linguistic categories limit and restrict cognitive categories. This was held by some of the early linguists before World War II,[3] but it is generally agreed to be false by modern linguists.[4] Nevertheless, research has produced positive empirical evidence supporting a weaker version of linguistic relativity:[4][3] that a language’s structures influence and shape a speaker’s perceptions, without strictly limiting or obstructing them.

Gettng back to Gellman, language, linguistic relativity, worldviews, and, adding physics/science, she quotes James (Sa’ke’j) Youngblood Henderson “a research fellow at the Native Law Centre of Canada, University of Saskatchewan College of Law. He was born to the Bear Clan of the Chickasaw Nation and Cheyenne Tribe in Oklahoma in 1944 and is married to Marie Battiste, a Mi’kmaw educator. In 1974, he received a juris doctorate in law from Harvard Law School,”

[at a 1993 dialogue between Western and Indigenous scientists …]

[Youngblood Henderson] We don’t have one god. You need a noun-based language to have one god. We have forces. All forces are equal and you are just the amplifier of the forces. The way you conduct your life and the dignity you give to other things gives you access to other forces. Even trees are verbs instead of nouns. The Mi’kmaq named their trees for the sound the wind makes when it blows through the trees during the autumn about an hour after the sunset, when the wind usually comes from a certain direction. So one might be like a ‘shu-shu’ something and another more like a ‘tinka-tinka’ something. Although physics in the western world has been essentially the quest for the smallest noun (which used to be a-tom, ‘that which cannot be further divided’), as they were inside the atom things weren’t acting like nouns anymore. The physicists were intrigued with the possibilities inherent in a language that didn’t depend on nouns but could move right to verbs when the circumstances were appropriate.3

This work from Gellman is a favourite of mine, and is featured in the January 13, 2020 article in Canadian Art Magazine and you’ll find it in the book,

Image courtesy Mimi Gellman. Mimi Gellman, ‘Invisible Landscapes,’ 2017. Conte on Japanese Obonai paper, 63.5 x 48.3 cm. [downloaded from https://www.ecuad.ca/news/2020/canadian-art-magazine-features-cover-artwork-by-mimi-gellman]

There are more LOoW images embedded in the January 6, 2020 article on the Canadian Art Magazine website.

Derksen and his poem

Karl Marx, Friedrich Engels, Theodor W. Adorno, and Georg Wilhelm Friedrich Hegel were unexpected guest stars in Derksen’s essay, “From Two to Another: The Anti-Matter Series,” given that he is an award-winning poet. These days he has this on his profile page on the Department of English, Simon Fraser University website, “Dean and Associate Provost, Graduate and Postdoctoral Studies.”

From LOoW,

Karl Marx and Friedrich Engels are well known as materialists, having helped define a materialist view of history, of economics and of capitalism. And both Marx and Engels aimed to develop Marxism as a science rather than a model based on naturalizing capitalism and “man.” … [p. 89]

Derksen includes a diagram/poem, for which I can’t find a digitized copy, but here’s what he had to say about it,

My mode of looking at this [antimatter] is through poetic research —which itself does not aim to arrive at a synthesis but instead looks for relational moments. In this I also see a poetic language emerge from both discourses [artistic/scientific]—matter-antimatter thought and dialectical thinking. For my contribution to Leaning Out of Windows, I have tried to combine the scientific aspect of dialectical thinking with the poetic aspect of matter-antimatter thought and experimentation. To do this, I have taken the diagrammatic rendering of Carl Anderson’s experiment which resulted in his 1932 paper … as a model to relate the dialectical thinking at the heart of Marxism and matter-antimatter thought. …

Towards the end of his essay, Derksen notes that he’s working (on what I would call) a real poem. I sent an email to Derksen on August 21, 2023 asking,

  • Have you written the poem or is still in progress?
  • If you have written it, has it been published or is it being readied for publication? I would be happy to mention where.
  • If you do have it ready and would like to ‘soft launch’ the poem, could you send it to me for inclusion in the post?

No response at this time.

Flashback to Alan Storey

I think it was 2002 or 2003 when I first heard about an artist at TRIUMF, Alan Storey. The ‘residency’ was the product of a joint effort between the Canada Council for the Arts (Canada Council) and the Natural Sciences and Engineering Council of Canada (NSERC).

I spoke with Storey towards the end of his ;residency; and he was a little disappointed because nothing much had come of it. Nobody really seemed to know what to do with an artist at a nuclear facility and he didn’t really didn’t seem to know either. (Alan Storey’s work can be seen in the City of Vancouver’s collection of public art works here and on his website.)

My guess is that someone had a great idea but didn’t think past the ‘let’s give money to science institutions so they can host some artists who will magically produce wonderful things for us’ stage of thinking. While there is no longer a Canada Council/NSERC programme, it’s clear from LOoW (funded by the Social Sciences and Humanities Research Council of Canada [SSHRC]) that lessons have been learned.

Kudos to David Morissey who acted as an interface and convenor for the artists and to Nigel Smith (Director 2021 – present) and Jonathan Bagger (Director 2014 – 2020) for supporting the project from the TRIUMF side and to Ingrid Koenig and Randy Lee Cutler who organized and facilitated LOoW from the artists’ side.

Now, for the nits

“Co-thought” is mentioned a number of times. What is it? According to my searches, it has something to do with gestures. Here’s one of the few reference I could find for co-thought,

Co-thought and co-speech gestures are generated by the same action generation process by Mingyuan Chu and Sotaro Kita. Exp Psychol Learn Mem Cogn. 2016 Feb;42(2):257-70. doi: 10.1037/xlm0000168. Epub 2015 Aug 3.

Abstract

People spontaneously gesture when they speak (co-speech gestures) and when they solve problems silently (co-thought gestures) [emphasis mine]. In this study, we first explored the relationship between these 2 types of gestures and found that individuals who produced co-thought gestures more frequently also produced co-speech gestures more frequently (Experiments 1 and 2). This suggests that the 2 types of gestures are generated from the same process. We then investigated whether both types of gestures can be generated from the representational use of the action generation process that also generates purposeful actions that have a direct physical impact on the world, such as manipulating an object or locomotion (the action generation hypothesis). To this end, we examined the effect of object affordances on the production of both types of gestures (Experiments 3 and 4). We found that individuals produced co-thought and co-speech gestures more often when the stimulus objects afforded action (objects with a smooth surface) than when they did not (objects with a spiky surface). These results support the action generation hypothesis for representational gestures. However, our findings are incompatible with the hypothesis that co-speech representational gestures are solely generated from the speech production process (the speech production hypothesis).

It would have been nice if Koenig and Cutler had noted they were borrowing a word ot coining a word and explaining how it was being used in the LOoW context.

Fruit, passports, and fishing trips

The editors/writers use the words or variants, metaphor, poetry, and analogy with great abandon.

“Fruitful bridge” (top of page) and “fruitful match-ups” (bottom of page) on p. 18 seemed a bit excessive as did the “metaphorical passport” on p. 5.

I choked a bit over this on p. 19, “… these artist/scientist interactions can be seen as ‘procedural metaphors’ that enact a thought experiment … .” Procedural metaphor? It seems a bit of a stretch.

A last example and it’s a pair: “metaphorical fishing trips whereby artist and scientists received whatever they might reel in …” on p. 42 (emphases mine). Fishing trips are mentioned in a later essay too, one of the few times there’s some sort of follow through on an analogy.

Maybe someone who wasn’t involved with the project should have taken a look at the text before it was sent to the printer.

Using the words, poetry, metaphor, and analogy can be tricky and, I want to emphasize that in my opinion, those words were not often put to good use in this book.

Moving on, arts and sciences together have a longstanding history.

*ETA October 3, 2023: Ooops! I had a comment about the use of the word ‘passports’ in the book but somewhere in all my edits, I cut it out. (huff)*

Poetry and physics

One of the giants of 19th century physics, James Clerk Maxwell was also known for his poetry. and some of the most evocative (poetic) text in the LOoW book can be found in the quotes from various physicists of the 20th century. The link between physicist and poetry is explicit in a September 17, 2018 posting (12 poignant poems (and one bizarre limerick) written by physicists about physics) by Colin Hunter for the Perimeter Institute for Theoretical Physics in Waterloo, Canada.

Going back further, there’s De rerum natura, a poem in six books, by Lucretius ((c. 99 BCE– c. 55 BCE). Amongst many other philosophical concerns (e.g., the nature of mind and soul, etc.), Lucretius also discussed atomism (“… a natural philosophy proposing that the physical universe is composed of fundamental indivisible components known as atoms; from the Atomism Wikipedia entry). So, poetry and physics have a long history.

Leaving aside Derksen’s diagram/poem, there’s a dearth of poetry in the book except for a suite of seven poems from TRIUMF physicist and professor at UBC, Jess Brewer following his “Emergence, Free Will and Magic” essay,

Emergence / An extremely brief history of one universe, expressed as a series of science fiction poems by Jess H. Brewer, June 29, 2019

Inspired by Dyson Freeman’s delightful lecture series , “Time Without End: Physics and Biology in an Open Universe,” Reviews of Modern Physics (51) 1979

1. Bang
Why not?
For reasons known only to itself,
the universe begins
The quantum foam of spacetime seethes
with effortless energies,
entering and exiting this continuum
with a turbulent intensity
transcending the superficially smooth
expanding cosmos
and yet it kens the glacial passage of “time”,
because it waits.
And kens the vast reaches of “space”,
because it watches,
Its own experiences has taught it that
from each iteration of complexity,
awareness will emerge.

… [p. 149]

My thanks to Brewer for the poetry and magic and my apologies for any mistakes I’ve introduced into his piece. I was trying to be especially careful with the punctuation as that can make quite a difference to how a piece is read.

While Muriel Rukeyser is not a physicist at TRIUMF or, indeed, alive, one of her poems leads the essay “Leaning into Language or the Universe is Made of Stories,” by Randy Lee Cutler and Ingrid Koenig,

Time comes into it
Say it. Say it.
The universe is made of stories,
not of atoms..
—Muriel Ruykeyser, Speed of Darkness, 1968

Before getting into the response that physicist, David Morrissey, had to the poem, here’s a little about the poet, from the Poetry Foundation’s Muriel Ruykeyser (1913-1980) webpage,

Muriel Rukeyser was a poet, playwright, biographer, children’s book author, and political activist. Indeed, for Rukeyser, these activities and forms of expression were linked. …

One of Rukeyser’s intentions behind writing biographies of nonliterary persons was to find a meeting place between science and poetry. [emphasis mine] In an analysis of Rukeyser’s The Life of Poetry, Virginia Terris argued that Rukeyser believed that in the West, poetry and science are wrongly considered to be in opposition to one another. Thus, writes Terris, “Rukeyser [set] forth her theoretical acceptance of science … [and pointed] out the many parallels between [poetry and science]—unity within themselves, symbolic language, selectivity, the use of the imagination in formulating concepts and in execution. [emphasis mine] Both, she believe[d], ultimately contribute to one another.”

Rokeyser’s poem raised a few questions. Is her poem a story? Or, is she using symbolic language, the poem, to poke fun at stories and atoms? Is she suggesting that atoms are really stories? I found the poem evocative especially with where it was placed in the book.

Morrissey takes a prosaic approach, from the essay “Leaning into Language or the Universe is Made of Stories,”

… [in response to Rukeyser’s claim about stories] Morrissey responded stating that “scientific theories are stories—but how we evaluate stories is important—they need to be true, but they do probe, and some are more popular than others, especially theories that we can’t measure.” He surprised us further when he said that wrong stories can also be useful—they may have elements in them that turn out to be useful for future research. … [pp. 205-6]

In general and throughout this project, it seems as if they (artists and physicists) tried but, for the most part, were never quite able to articulate in poetic, metaphoric, and analogical forms. They tended to fall back onto their preferred modes of scientific notations, prosaic language, and artworks.

Both sides of the knife blade cut

Everybody does it. Poets, academics, artists, scientists, etc. we all appropriate ideas and language, sometimes without understanding them very well. Take this for example, from the Canadian Broadcasting’s (CBC) Books “Elementary Particles” August 16, 2023 webpage,

Elementary Particles by Sneha Madhavan-Reese

A poetry collection about family history and scientific exploration

Through keen, quiet observation, Sneha Madhavan-Reese’s evocative new collection takes us from the wide expanse of rural India to the minute map of Michigan we carry on the palms of our hands. These poems contemplate ancestral language, the wonder and uncertainty of scientific discovery, the resilience of a dung beetle, the fleeting existence of frost flowers on the Arctic Ocean.

The collection is full of familiar characters, from Rosa Parks to Seamus Heaney to Corporal Nathan Cirillo, anchoring it in specific moments in time and place, but has the universality that comes from exploring the complex relationship between a child and her immigrant parents, and in turn, a mother and her children. Elementary Particles examines the building blocks of a life — the personal, family, and planetary histories, transformations, and losses we all experience. (From Brick Books)

Sneha Madhavan-Reese is a writer currently based in Ottawa. In 2015 she received Arc Poetry Magazine’s Diana Brebner Prize and was shortlisted for the Montreal International Poetry Prize. Her previous poetry collection is called Observing the Moon

As you can see, there’s no substantive mention of physics in this book description—it’s just a title. Puzzling since there’s this about the author on Asian Heritage Canada’s Sneha Madhavan-Reese webpage

Sneha Madhavan-Reese’s award winning poetry has been widely published in literary magazines in North America and Australia. She earned a bachelor’s degree in mechanical engineering from MIT in 2000, and a master’s degree in mechanical engineering from the University of Michigan in 2002. Madhavan-Reese currently lives in Ottawa, Ontario. [emphases mine]

It seems the mechanical engineer did not write up her book blurb because even though the poet’s scientific specialty is not physics as such, I’d expect a better description.

In the end, it seems art and science or poetry and science (in this case, physics) sells.

Alchemy, beauty, and Marx’s surprise connection to atomism

It was unexpected to see a TRIUMF physicist reference alchemy. The physicists haven’t turned lead into gold but they have changed one element into another. If memory holds it was one metallic atom being changed into another type of metallic atom. (Having had to return the book to the library, memory has serve.)

The few references to alchemy that I’ve stumbled across elsewhere in my readings of assorted science topics are derogatory, hence the surprise. Things may be changing; Princeton University Press published a November 7, 2018 posting by author William R. Newman about Newton and alchemy. First, here’s a bit about William Newman,

William R. Newman is Distinguished Professor and Ruth N. Halls Professor in the Department of History and Philosophy of Science and Medicine at Indiana University. His many books include Atoms and Alchemy: Chymistry and the Experimental Origins of the Scientific Revolution and Promethean Ambitions: Alchemy and the Quest to Perfect Nature. He lives in Bloomington, Indiana.

Now for Newman’s comments, from the November 7, 2018 posting,

People often say that Isaac Newton was not only a great physicist, but also an alchemist. This seems astonishing, given his huge role in the development of science. Is it true, and if so, what is the evidence for it?

WN: The astonishment that Newton was an alchemist stems mostly from the derisive opinion that many moderns hold of alchemy [emphasis mine]. How could the man who discovered the law of universal gravitation, who co-invented calculus, and who was the first to realize the compound nature of white light also engage in the seeming pseudo-science of alchemy? There are many ways to answer this question, but the first thing is to consider the evidence of Newton’s alchemical undertaking. We now know that at least a million words in Newton’s hand survive in which he addresses alchemical themes. Much of this material has been edited in the last decade, and is available on the Chymistry of Isaac Newton site at www.chymistry.org. Newton wrote synopses of alchemical texts, analyzed their content in the form of reading notes and commentaries, composed florilegia or anthologies made up of snippets from his sources, kept experimental laboratory notebooks that recorded his alchemical research over a period of decades, and even put together a succession of concordances called the Index chemicus in which he compared the sayings of different authors to one another. The extent of his dedication to alchemy was almost unprecedented. Newton was not just an alchemist, he was an alchemist’s alchemist. 

… 

Beauty

The ‘beauty’ essay by Ingrid Koenig was also a surprise. Beauty seems to be anathema to contemporary artists. I wrote this in an August 23, 2016 posting (Georgina Lohan, Bharti Kher, and Pablo Picasso: the beauty and the beastliness of art [in Vancouver]), “It seems when it comes to contemporary art, beauty is transgressive.”

Koenig describes it as irrelevant for contemporary artists and yet, beauty is an important attribute to physicists. Her thoughts on beauty in visual art and in physics were a welcome addition to the book.

Marx’s connection to atomism

This will take a minute.

De rerum natura, a six-volume poem by Lucretius (mentioned under the Poetry and physics subhead of this posting), helped to establish the concept of atomism. As it turns out, Lucretius got the idea from earlier thinkers, Epicurus and Democritus.

Karl Marx’s doctoral dissertation, which focused on Lucretius, Epicurus and more, suggests an interest in science that may have led to his desire to establish economics as a science. From Cambridge University Press’s “Approaches to Lucretius; Traditions and Innovations in Reading the De Rerum Natura,” Chapter 12 – A Tribute to a Hero: Marx’s Interpretation of Epicurus in his Dissertation,

Summary

This chapter turns to Karl Marx’s treatment of Epicureanism and Lucretius [emphasis mine] in his doctoral dissertation, and argues that the questions raised by Marx may be brought to bear on our own understanding of Epicurean philosophy, particularly in respect of a tension between determinism and individual self-consciousness in a universe governed by material causation. Following the contours of Marx’s dissertation [emphasis mine], the chapter focusses on three key topics: the difference between Democritus’ and Epicurus’ methods of philosophy; the swerve of the atom; and the so-called ‘meteors’, or heavenly bodies [emphasis mine]. Marx sought to develop Hegel’s understanding of Epicurus, in particular by elevating the principle of autonomous action to a first form of self-consciousness – a consideration largely mediated by Lucretius’ theorization of the atomic swerve and his poem’s overarching framework of liberating humans from the oppression of the gods.

Fascinating, eh? The rest of this is behind a paywall. For the interested, here’s a citation and link for the book,

Approaches to Lucretius; Traditions and Innovations in Reading the De Rerum Natura
Edited by Donncha O’Rourke, University of Edinburgh

Publisher: Cambridge University Press
Online publication date: June 2020
Print publication year: 2020
Online ISBN: 9781108379854

DOI: https://doi.org/10.1017/9781108379854

32.99 (USD) Digital access

It’s a little surprising Derksen doesn’t mention the connection in his essay.

Finally

It’s an interesting book if not an easy one. (By the way, I wish they’d included an index.) You can get a preview of some of the artwork in the January 6, 2020 article on the Canadian Art Magazine website.

I can’t rid myself of the feeling that LOoW (the book) is meant to function as a ‘proof of concept’ for someone wanting to start an art/science department or programme at the Emily Carr University of Art + Design, perhaps jointly with the University of British Columbia. It is highly unusual to see this sort of material in anything other than a research journal or as a final summary to the granting agency.

Should starting an art/science programme be the intention, I hope they are successful in getting such it together and, in the meantime, thank you to the physicists and artists for their work.

We should all ‘lean out of windows’ on occasion and, if it means, falling or encountering ‘dangerous, uncomfortable ideas’ then, that’s alright too.

Punctuation: a universal complement to the mathematical perfection of language

Before getting to the research into mathematics and punctuation, I’m setting the scene with snippets from a February 13, 2023 online article by Dan Falk for Aperio magazine, which seems to function both as a magazine and an advertisement for postdoctoral work in Israel funded by the Azrieli Foundation,

Four centuries ago, Galileo famously described the physical world as a realm that was rooted in mathematics. The universe, he wrote, “cannot be read until we have learnt the language and become familiar with the characters in which it is written. It is written in mathematical language, and the letters are triangles, circles and other geometrical figures, without which means it is humanly impossible to comprehend a single word.”

Since Galileo’s time, scientists and philosophers have continued to ponder the question of why mathematics is so shockingly effective at describing physical phenomena. No one would deny that this is a deep question, but for philosopher Balthasar Grabmayr, an Azrieli International Postdoctoral Fellow at the University of Haifa, even deeper questions lie beneath it. Why does mathematics work at all? Does mathematics have limits? And if it does, what can we say about those limits?

Grabmayr found his way to this field from a very different passion: music. Growing up in Vienna, he attended a music conservatory and was set on becoming a classical musician. Eventually, he began to think about what made music work, and then began to think about musical structure. “I started to realize that, actually, what I’m interested in — what I found so attractive in music — is basically mathematics,” he recalls. “Mathematics is the science of structure. I was completely captured by that.”

One of Grabmayr’s main areas of research involves Gödel coding, a technique that, roughly put, allows mathematics to study itself. Gödel coding lets you convert statements about a system of rules or axioms into statements within the original system.

Gödel coding is named for the Austrian logician Kurt Gödel, who in the 1930s developed his famous “incompleteness theorems,” which point to the inherent limitations of mathematics. Although expressed as an equation, Gödel’s proof was based on the idea that a sentence such as “This statement is unprovable” is both true and unprovable. As Rebecca Goldstein’s biography of Gödel declares, he “demonstrated that in every formal system of arithmetic there are true statements that nevertheless cannot be proved. The result was an upheaval that spread far beyond mathematics, challenging conceptions of the nature of the mind.”

Grabmayr’s work builds on the program that Gödel began nearly a century ago. “What I’m really interested in is what the limitations of mathematics are,” he says. “What are the limits of what we can prove? What are the limits of what we can express in formal languages? And what are the limits of what we can calculate using computers?” (That last remark shows that Gödel coding is of interest well beyond the philosophy of mathematics. “We’re surrounded by it,” says Grabmayr. “I mean, without Gödel coding there wouldn’t be any computers.”)

Another potential application is in cognitive science and the study of the mind. Psychologists and other scientists have long debated to what extent the mind is, or is not, like a computer. When we “think,” are we manipulating symbols the way a computer does? The jury is still out on that question, but Grabmayr believes his work can at least point toward some answers. “Cognitive science is based on the premise that we can use computational models to capture certain phenomena of the brain,” he says. “Artificial intelligence, also, is very much concerned with trying to formally capture our reasoning, our thinking processes.”

Albert Visser, a philosopher and logician at Utrecht University in the Netherlands and one of Grabmayr’s PhD supervisors, sees a number of potential payoffs for this research. “Balthasar’s work has some overspill to computer science and linguistics, since it involves a systematic reflection both on coding and on the nature of syntax,” he says. “The discussion of ideas from computer science and linguistics in Balthasar’s work is also beneficial in the other direction. [emphases mine]

Now for the research into punctuation in European languages. From an April 19, 2023 Henryk Niewodniczanski Institute of Nuclear Physics Polish Academy of Sciences press release (also on EurekAlert but published April 20, 2023),

A moment’s hesitation… Yes, a full stop here – but shouldn’t there be a comma there? Or would a hyphen be better? Punctuation can be a nuisance; it is often simply neglected. Wrong! The most recent statistical analyses paint a different picture: punctuation seems to “grow out” of the foundations shared by all the (examined) languages, and its features are far from trivial.

To many, punctuation appears as a necessary evil, to be happily ignored whenever possible. Recent analyses of literature written in the world’s current major languages require us to alter this opinion. In fact, the same statistical features of punctuation usage patterns have been observed in several hundred works written in seven, mainly Western, languages. Punctuation, all ten representatives of which can be found in the introduction to this text, turns out to be a universal and indispensable complement to the mathematical perfection of every language studied. Such a remarkable conclusion about the role of mere commas, exclamation marks or full stops comes from an article by scientists from the Institute of Nuclear Physics of the Polish Academy of Sciences (IFJ PAN) in Cracow, published in the journal Chaos, Solitons & Fractals.

“The present analyses are an extension of our earlier results on the multifractal features of sentence length variation in works of world literature. After all, what is sentence length? It is nothing more than the distance to the next specific punctuation mark –  the full stop. So now we have taken all punctuation marks under a statistical magnifying glass, and we have also looked at what happens to punctuation during translation,” says Prof. Stanislaw Drozdz (IFJ PAN, Cracow University of Technology).

Two sets of texts were studied. The main analyses concerning punctuation within each language were carried out on 240 highly popular literary works written in seven major Western languages: English (44), German (34), French (32), Italian (32), Spanish (32), Polish (34) and Russian (32). This particular selection of languages was based on a criterion: the researchers assumed that no fewer than 50 million people should speak the language in question, and that the works written in it should have been awarded no fewer than five Nobel Prizes for Literature. In addition, for the statistical validity of the research results, each book had to contain at least 1,500 word sequences separated by punctuation marks. A separate collection was prepared to observe the stability of punctuation in translation. It contained 14 works, each of which was available in each of the languages studied (two of the 98 language versions, however, were omitted due to their unavailability). In total, authors in both collections included such writers as Conrad, Dickens, Doyle, Hemingway, Kipling, Orwell, Salinger, Woolf, Grass, Kafka, Mann, Nietzsche, Goethe, La Fayette, Dumas, Hugo, Proust, Verne, Eco, Cervantes, Sienkiewicz or Reymont.

The attention of the Cracow researchers was primarily drawn to the statistical distribution of the distance between consecutive punctuation marks. It soon became evident that in all the languages studied, it was best described by one of the precisely defined variants of the Weibull distribution. A curve of this type has a characteristic shape: it grows rapidly at first and then, after reaching a maximum value, descends somewhat more slowly to a certain critical value, below which it reaches zero with small and constantly decreasing dynamics. The Weibull distribution is usually used to describe survival phenomena (e.g. population as a function of age), but also various physical processes, such as increasing fatigue of materials.

“The concordance of the distribution of word sequence lengths between punctuation marks with the functional form of the Weibull distribution was better the more types of punctuation marks we included in the analyses; for all marks the concordance turned out to be almost complete. At the same time, some differences in the distributions are apparent between the different languages, but these merely amount to the selection of slightly different values for the distribution parameters, specific to the language in question. Punctuation thus seems to be an integral part of all the languages studied,” notes Prof. Drozdz, only to add after a moment with some amusement: “…and since the Weibull distribution is concerned with phenomena such as survival, it can be said with not too much tongue-in-cheek that punctuation has in its nature a literally embedded struggle for survival.”

The next stage of the analyses consisted of determining the hazard function. In the case of punctuation, it describes how the conditional probability of success – i.e. the probability of the next punctuation mark – changes if no such mark has yet appeared in the analysed sequence. The results here are clear: the language characterised by the lowest propensity to use punctuation is English, with Spanish not far behind; Slavic languages proved to be the most punctuation-dependent. The hazard function curves for punctuation marks in the six languages studied appeared to follow a similar pattern, they differed mainly in vertical shift.

German proved to be the exception. Its hazard function is the only one that intersects most of the curves constructed for the other languages. German punctuation thus seems to combine the punctuation features of many languages, making it a kind of Esperanto punctuation. The above observation dovetails with the next analysis, which was to see whether the punctuation features of original literary works can be seen in their translations. As expected, the language most faithfully transforming punctuation from the original language to the target language turned out to be German.

In spoken communication, pauses can be justified by human physiology, such as the need to catch one’s breath or to take a moment to structure what is to be said next in one’s mind. And in written communication?

“Creating a sentence by adding one word after another while ensuring that the message is clear and unambiguous is a bit like tightening the string of a bow: it is easy at first, but becomes more demanding with each passing moment. If there are no ordering elements in the text (and this is the role of punctuation), the difficulty of interpretation increases as the string of words lengthens. A bow that is too tight can break, and a sentence that is too long can become unintelligible. Therefore, the author is faced with the necessity of ‘freeing the arrow’, i.e. closing a passage of text with some sort of punctuation mark. This observation applies to all the languages analysed, so we are dealing with what could be called a linguistic law,” states Dr Tomasz Stanisz (IFJ PAN), first author of the article in question.

Finally, it is worth noting that the invention of punctuation is relatively recent – punctuation marks did not occur at all in old texts. The emergence of optimal punctuation patterns in modern written languages can therefore be interpreted as the result of their evolutionary advancement. However, the excessive need for punctuation is not necessarily a sign of such sophistication. English and Spanish, contemporarily the most universal languages, appear, in the light of the above studies, to be less strict about the frequency of punctuation use. It is likely that these languages are so formalised in terms of sentence construction that there is less room for ambiguity that would need to be resolved with punctuation marks.

The Henryk Niewodniczański Institute of Nuclear Physics (IFJ PAN) is currently one of the largest research institutes of the Polish Academy of Sciences. A wide range of research carried out at IFJ PAN covers basic and applied studies, from particle physics and astrophysics, through hadron physics, high-, medium-, and low-energy nuclear physics, condensed matter physics (including materials engineering), to various applications of nuclear physics in interdisciplinary research, covering medical physics, dosimetry, radiation and environmental biology, environmental protection, and other related disciplines. The average yearly publication output of IFJ PAN includes over 600 scientific papers in high-impact international journals. Each year the Institute hosts about 20 international and national scientific conferences. One of the most important facilities of the Institute is the Cyclotron Centre Bronowice (CCB), which is an infrastructure unique in Central Europe, serving as a clinical and research centre in the field of medical and nuclear physics. In addition, IFJ PAN runs four accredited research and measurement laboratories. IFJ PAN is a member of the Marian Smoluchowski Kraków Research Consortium: “Matter-Energy-Future”, which in the years 2012-2017 enjoyed the status of the Leading National Research Centre (KNOW) in physics. In 2017, the European Commission granted the Institute the HR Excellence in Research award. As a result of the categorization of the Ministry of Education and Science, the Institute has been classified into the A+ category (the highest scientific category in Poland) in the field of physical sciences.

Here’s a link to and a citation for the paper,

Universal versus system-specific features of punctuation usage patterns in major Western languages by Tomasz Stanisz, Stanisław Drożdż, and Jarosław Kwapień. Chaos, Solitons & Fractals Volume 168, March 2023, 113183 DOI: https://doi.org/10.1016/j.chaos.2023.113183

This paper is behind a paywall but the publishers do offer a preview of sorts.

There is also an earlier, less polished, open access version on the free peer review website arXiv,

Universal versus system-specific features of punctuation usage patterns in~major Western~languages by Tomasz Stanisz, Stanislaw Drozdz, Jaroslaw Kwapie. arXiv:2212.11182 [cs.CL] (or arXiv:2212.11182v1 [cs.CL] for this version) DOI: https://doi.org/10.48550/arXiv.2212.11182 Postede Wed, 21 Dec 2022 16:52:10 UTC (1,073 KB)

Physics in James Joyce’s Ulysses and physics amongst the penguins

So James Joyce included some physics in his novel, Ulysses (serialized in The Little Review from March 1918 to December1920 and published as a novel in February 1922)?

That’s not the only surprise. Apparently, penguins perform some interesting feats from a physics perspective. I have two stories about penguin physics with the latest research being published in June 2023.

Let’s start with literature.

James Joyce, Ulysses, and 19th century physics

This article came to my attention in April 2023 but the material is from 2021/22. Thankfully, since it’s a literature topic, timing doesn’t matter quite as much as it does for other topics. From a December 22, 2021 American Institute of Physics news release highlights an intriguing article in The Physics Teacher,

James Joyce’s book “Ulysses” is widely considered a 20th-century literary masterpiece. It also contains a surprising amount of 19th-century classical physics, according to Harry Manos, faculty member at Los Angeles City College.

“Ulysses” chronicles the ordinary life of the protagonist Leopold Bloom over a single day in 1904. In The Physics Teacher, by AIP Publishing, Manos reveals several connections that have not been analyzed before in the Joycean literature between classic physics prevalent during that time and various passages of the book.

“‘Ulysses’ exemplifies what physics students and teachers should realize — namely, physics and literature are not mutually exclusive,” Manos said.

Manos shows how Joyce uses the optics of concave and convex mirrors to metaphorically parallel “Ulysses” with Homer’s “Odyssey,” and how Joyce uses physics to show Bloom’s strengths and weaknesses in science.

Here’s a link to and a citation for the paper,

Physics in James Joyce’s Ulysses by Harry Manos. The Physics Teacher 60, 6–10 (2022) DOI: https://doi.org/10.1119/5.0028832 Published online: January 1, 2022

This paper is behind a paywall but there is a freely available abstract

Ulysses by James Joyce (1882–1941) has a surprising amount of 19th-century, classical physics. The physics community is familiar with the name James Joyce mainly through the word “quark” (onomatopoeic for the sound of a duck or seagull), which Murray Gell-Mann (1929-2019 – Physics Nobel Prize 1969) sourced from Joyce’s Finnegan’s Wake. Ulysses, however, was ranked number one in 1998 on the Modern Library “100 Best Novels” list and is, in whole or in part, in the literature curriculum in university English departments worldwide. The fact that Ulysses contains so much classical physics should not be surprising. Joyce’s friend Eugene Jolas observed: “the range of subjects he [Joyce] enjoyed discussing was a wide one … [including] certain sciences, particularly physics, geometry, and mathematics.” Knowing physics can enhance everyone’s understanding of this novel and enrich its entertainment value. Ulysses exemplifies what physics students (science and non-science majors) and physics teachers should realize, namely, physics and literature are not mutually exclusive.

In addition to the December 22, 2021 American Institute of Physics news release which provides some detail about the physics in Ulysses, there’s Jennifer Ouellette’s April 2, 2023 article for Ars Technica where in addition to the material in the news release, she adds some intriguing information, Note: Links have been removed,

In Chapter 15 (“Circe”), one of the characters says, “You can call me up by sunphone any old time”—a phrase that also appears in Joyce’s handwritten notes for the chapter. While Manos was unable to trace a specific source for this term, there was a similar device that had been invented some 20 years earlier: Alexander Graham Bell’s photophone, co-invented with his assistant Charles Sumner Tainter.

Unlike the telephone, which relies on electricity, the photophone transmitted sound on a beam of light. Bell’s voice was projected through the instrument to a mirror, causing similar vibrations in the mirror. When he directed sunlight into the mirror, it captured and projected the mirror’s vibrations via reflection, which were then transformed back into sound at the receiving end of the projection. Bell’s device never found immediate application, but it’s arguably the progenitor to modern fiber-optic telecommunications.

There are several other instances of physics (both correct and incorrect/outdated) mentioned in Ulysses, per Manos, including Bloom misunderstanding the science of X-rays; his confusion over parallax; trying to figure out the source of buoyancy in the Dead Sea; ruminating on Archimedes’ “burning glass”; seeing rainbow colors in a water spray; and pondering why he hears the ocean when he places a seashell to his ear. Manos believes introducing literature like Ulysses into physics courses could be a boon for non-majors, as well as encouraging physics and engineering students to learn more about literature.

In fact, Manos notes that an earlier 1995 paper introduced a handy introductory physics problem involving distance, velocity, and time. Ulysses opens with Stephen Dedalus and his roommate, Buck Mulligan, standing at the Martello tower overlooking a bay at Sandy Cove. …

Now onto …

Penguin physics

Two stories, two research teams, and six months separate their papers.

A February 7, 2023 news item on phys.org features work from a team of Japanese scientists studying how penguins turn in the water, Note: A link has been removed,

Penguins constitute a fascinating family of flightless birds, that although somewhat clumsy on land, are extremely talented swimmers. Their incredible maneuverability in water has captivated biologists for decades, with the first hydrodynamic studies on their swimming dating back to the 1970s.

Although a rare few studies have clarified some of the physics behind penguins’ dexterity, most of them have focused on forward swimming rather than turning. While one may argue that existing studies on the turning mechanisms of flying birds could shed some light on this topic, water is 800 hundred times denser than air, and thus the turning mechanisms employed are presumably very different between these media.

In an effort to bridge this knowledge gap, a pair of Japanese scientists from Tokyo Institute of Technology (Tokyo Tech), including Associate Professor Hiroto Tanaka, recently conducted a study. The main goal of this work, which was published in Journal of Experimental Biology, was to gain a better understanding of the three dimensional (3D) kinematics and hydrodynamic forces that enable penguins to turn underwater.

Penguin Physics: Understanding the Mechanisms of Underwater Turning Maneuvers in Penguins
Credit: Tokyo Institute of Technology

A February 8, 2023 Tokyo Institute of Technology (Tokyo Tech) press release, which originated the news item, describes the research in more technical detail,

The researchers recorded two sessions of gentoo penguins (Pygoscelis papua) free swimming in a large water tank at Nagasaki Penguin Aquarium, Japan, using a dozen or more underwater cameras. Then, thanks to a technique called 3D direct linear transformation, they were able to integrate data from all the footage and conduct detailed 3D motion analyses by tracking various points on the penguins’ bodies and wings.

Armed with these data, the researchers then established a mathematical 3D body model of the penguins. This model covered the orientation and angles of the body, the different positions and motions of the wings during each stroke, the associated kinematic parameters and hydrodynamic forces, and various turning metrics. Through statistical analyses and comparisons with the experimental data, the researchers validated the model and gained insight into the role of the wings and other body movements during turning.

The main findings of the study were related to how penguins generate centripetal force to assist their turns. They achieve this, in part, is by maintaining outward banking, which means that they tilt their bodies such that their belly faces inward. In powered turns—those in which the penguin flaps its wings—the majority of changes in direction occur during the upstroke, whereas the forward thrust occurs during the downstroke. In addition, it turns out that penguins flap their wings with a certain asymmetry during powered turns. “We found contralateral differences in wing motion; the wing on the inside of the turn becomes more elevated during the upstroke than the other,” explains Assoc. Prof. Tanaka, “Quasi-steady calculations of wing forces confirmed that this asymmetry in wing motion with the outward banking contributes to the generation of centripetal force during the upstroke. In the following downstroke, the inside wing generates thrust and counter yaw torque to brake the turning.”

Overall, these findings contribute to a greater understanding of how penguins turn when swimming, which is relevant from both biological and engineering standpoints. However, Assoc. Prof. Tanaka remarks that these findings bring but one piece to the puzzle: “The mechanisms of various other maneuvers in penguins, such as rapid acceleration, pitch up and down, and jumping out of the water, are still unknown. Our study serves as the basis for further understanding of more complex maneuvers.”

Let us hope future research helps fully clarify how penguins achieve their mesmerizing aquatic prowess!

Here’s a link to and a citation for the paper,

Kinematic and hydrodynamic analyses of turning manoeuvres in penguins: body banking and wing upstroke generate centripetal force by Natsuki Harada and Hiroto Tanaka. J Exp Biol (2022) 225 (24): jeb244124. DOI: https://doi.org/10.1242/jeb.244124 Published online December 22, 2022

This paper is open access.

Penguins are the fastest swimming birds and this team published a paper about their propulsion six months after the ‘turning’ team according to a June 20, 2023 news item on phys.org,

Penguins aren’t just cute: they’re also speedy. Gentoo penguins are the fastest swimming birds in the world, and that ability comes from their unique and sophisticated wings.

Researchers from the University of Chinese Academy of Sciences, Chinese Academy of Sciences, and King Mongkut’s Institute of Technology Ladkrabang [KMITL or KMIT Ladkrabang; Thailand] developed a model to explore the forces and flow structures created by penguin wings underwater. They determined that wing feathering is the main factor for generating thrust. Their findings have been published in the journal Physics of Fluids.

An American Institute of Physics June 20, 2022 news release (also on EurekAlert), which originated the news item, provides further explanation of how penguins are able to achieve their swimming speed,

Penguin wings, aka flippers, bear some resemblance to airplane wings covered with scaly feathers. To maximize efficiency underwater instead of in the air, penguin wings are shorter and flatter than those of flying birds.

The animals can adjust swimming posture by active wing feathering (changing the angle of their wings to reduce resistance), pitching, and flapping. Their dense, short feathers can also lock air between the skin and water to reduce friction and turbulence.

“Penguins’ superior swimming ability to start/brake, accelerate/decelerate, and turn swiftly is due to their freely waving wings. They allow penguins to propel and maneuver in the water and maintain balance on land,” said author Prasert Prapamonthon. “Our research team is always curious about sophisticated creatures in nature that would be beneficial to mankind.”

The hydrodynamic model takes in information about the flapping and feathering of the wings, including amplitude, frequency, and direction, and the fluid parameters, such as velocity and viscosity. Using the immersed boundary method, it solves for the motion of the wing and the thrust, lift, and lateral forces.

To establish the movement of wings across species, researchers use the ratio of wing flapping speed to forward speed. This value avoids any differences between air and water. Additionally, the authors define an angle of thrust, determined by the angle of the wings. Both of these parameters have a significant impact on the penguin’s thrust.

“We proposed the concept of angle of thrust, which explains why finned wings generate thrust: Thrust is primarily determined by the angle of attack and the relative angle of the wings to the forward direction,” said Prapamonthon. “The angle of thrust is an important concept in studying the mechanism of thrust generated by flapping motion and will be useful for designing mechanical wing motion.”

These findings can guide the design of aquatic vehicles by quickly estimating propulsion performance without high experimental or computational costs.

In the future, the team plans to examine a more realistic 3D penguin model. They will incorporate different wing properties and motion, such as starting, braking, turning, and jumping in and out of water.

Here’s a link to and a citation for the paper,

Hydrodynamic performance of a penguin wing: Effect of feathering and flapping by Hao Zhanzhou (郝占宙), Yin Bo (银波), Prasert Prapamonthon, Yang Guowei (杨国). Physics of Fluids 35 (6), 061907 (2023) DOI: https://doi.org/10.1063/5.0147776 Published online: June 20, 2023

This paper is open access.

12th World Conference of Science Journalists in Medellín, Colombia from March 27-31, 2023

I very rarely get a chance to feature science from Latin America and the Caribbean, largely due to my lack of Spanish, Portuguese, or Dutch language skills. So, you might say I’m desperate to find something, which explains, at least in part, why I’m posting about the 12th World Conference (WCSJ).

A March 29, 2023 WCSJ press release (also on EurekAlert but published March 28, 2023) describes the opening day of the 2023 conference,

The opening day [March 27, 2023] of the World Conference of Science Journalists (WCSJ) 2023 in Medellín, Colombia saw hundreds of journalists from 62 countries come together in the stunning setting of the city’s Jardin Botanico.

Over 500 attendees will gather over three days to discuss science journalism, to challenge ideas and to reinforce their professional networks and friendships. 

The day began with a keynote on biodiversity delivered by Brigitte Baptiste, a Colombian biologist and expert in biodiversity issues. And it closed with an opening ceremony and vibrant social event for attendees.

Both took place under open skies in the Jardin’s orquideorama, an open air meshwork of flower-tree structures surrounded by trees, butterflies and with a backdrop of birdsong. 

Two other plenaries focused on scientific advice and news from Amazonia. The morning’s parallel panels covered Latin American and international collaboration, with discussions from Latin American women researchers, reporting on science, health and the environment in the region and what the world can learn from Latin American and the Caribbean early warning alerts systems. The afternoon saw discussions on COVID-19, popular science writing and astronomy. 

The conference continues until Friday when there are scientific tours and excursions that provide the opportunity to visit local research teams and find out more about science in the region.

According to WWF, Colombia is the most biodiverse country per square kilometre in the world. It is also the country with the largest number of bird species — over 1,900  —  and the greatest number of butterfly species — over 3,600 or 20% butterfly species. 

Milica Momcilovic, President of the World Federation of Science Journalists said: “Independent journalism is the lifeblood of democracy and our focus at the Federation is, and will continue to be, supporting independent science journalism around the world. I have seen first hand how talented science journalists can change the world for the better and during this conference they will tell us these stories in person.”

Ximena Serrano Gil, Director of the Medellín conference said: “Colombia and Medellin are a biodiversity hotspot, an unrivalled laboratory for helping other nations adapt to climate change, a model for how to feed populations in rapidly changing tropical environments, and a cultural repository where thousands of years of indigenous peoples’ knowledge can make a lasting contribution to the wisdom of future generations.”

She continued: “The opportunity to share ideas and collaborate with others is invaluable and we must continue to create platforms that facilitate these interactions. I hope that other places in the global south will have the opportunity to host the WCSJ.” 

Over the past two decades, the World Federation of Science Journalists (WFSJ) has mounted the WCSJ every other year. The event has been held in cities across the globe, and the current edition in Medellín, Colombia, was postponed from 2021 because of the COVID-19 pandemic. Each gathering lasts about a week and attracts hundreds of participants from the WFSJ membership, including some 10,000 science writers in 51 countries.

This conference has been put together with a specific focus on the global south and on amplifying new voices from science journalist communities.

The programme has something that interests me, a talk on brain organoids according to a March 17, 2023 WCSJ press release, Note: Links have been removed,

Food security, organoid intelligence, local tours and scientific excursions

Plenary: Challenges to food security in the face of global catastrophe risks

In times of crisis and global risks, very few issues have as many factors feeding into them as food security. The integrative measures envisaged by various global players link the actions that are needed to meet the challenges we face. These should be considered in terms of technology, economics and security to ensure the future of food security, but also how science validates the environmental the environmental impact and guarantees the viability of the processes. 

Jennifer Wiegel is the Sub Regional Manager for Central America and a scientist in the Food Environment and Consumer Behavior research area of the Alliance of Bioversity International and CIAT [International Center for Tropical Agriculture]. Her research includes work on agri-food systems, food markets and value chains for inclusion and sustainability and public procurement. She has a Ph.D. in Sociology from the University of Wisconsin-Madison and a Master’s in Rural Sociology from the same University.

Juan Fernando Zuluaga is the National Territorial Coordinator for Antioquia. He has a  PhD in Social Sciences from the University of Antioquia and a Master in RuralEconomics from the Federal University of Ceará-Brazil. Juan is a specialist in finance from  the Latin American Autonomous University and Agricultural Engineer from the National University of Medellín.

Thomas Hartung, MD, PhD. Professor of environmental health sciences at the Johns Hopkins Bloomberg School of Public Health and Whiting School of Engineering and Professor for Pharmacology and Toxicology at University of Konstanz, Germany. He is leading the revolution in toxicology to move away from 50+ year old animal testing to organoid cultures and the use of artificial intelligence.

New keynote

Climate change: How to embroider the risks that put the stability of the most vulnerable at risk

Paola Andrea Arias Gómez is Professor of the Environmental School of the Faculty of Engineering of the University of Antioquia. In 2021 she was El Espectador’s Person of the Year and received the Medellin Council’s Orchid Award for Scientific Merit.

Paola completed her undergraduate studies in Civil Engineering and a Master’s degree in Water Resources Development at the National University of Colombia, Medellin. She was Head of the Environmental School of the Faculty of Engineering of the University of Antioquia and is now a member of the First Working Group of the Intergovernmental Panel on Climate Change (IPCC). She is also a member of the GEWEX Hydroclimatology Panel (GHP), the Amazon Regional Hydrogeomorphology Working Group (UNESCO) and the WCRP Science Plan Development Team (WCRP) Lighthouse Activities – My Climate Risk.

Parallel session:

In conversation: “Organoid intelligence”: the future of modern computing from human brain cells. [sic]

Biocomputing is a huge effort to compact computational power and increase its efficiency to overcome current technological limits. Researchers at Johns Hopkins delve into this technology that may one day produce computers that are faster, more efficient and more powerful than silicon-based computing and AI.

Thomas Hartung, MD, PhD. will present the team’s latest research and discuss its context, implications and what his hopes are for the field. 

Thomas Hartung is the Director of Centers for Alternatives to Animal Testing (CAAT, http://caat.jhsph.edu) of both universities. CAAT hosts the secretariat of the Evidence-based Toxicology Collaboration (http://www.ebtox.org) and manages collaborative programs on Good Read-Across Practice, Good Cell Culture Practice, Green Toxicology, Developmental Neurotoxicity, Developmental Immunotoxicity, Microphysiological Systems and Refinement.

I found another intriguing session (Story Corner: “Fusion Energy and Climate Change – The Conversation begins” by ITER) which was held on Tuesday, March 28, 2023 at 9:30 – 10:00 am during the coffee break. (For more about fusion energy, see my October 28, 2022 posting “Overview of fusion energy scene“.)

While it’s too late to sign up for the conference, you might find perusing the programme schedule provides some insight into issues being faced my science journalists outside the Canada/US bubble.