Tag Archives: carbon dioxide (CO2)

After sugar-free meals, soil bacteria respire more CO2

Scientists have found out more about how carbon cycles through the environment in a June 11, 2024 news item on ScienceDaily,

When soil microbes eat plant matter, the digested food follows one of two pathways. Either the microbe uses the food to build its own body, or it respires its meal as carbon dioxide (CO2) into the atmosphere.

Now, a Northwestern University [Illinois, US]-led research team has, for the first time, tracked the pathways of a mixture of plant waste as it moves through bacteria’s metabolism to contribute to atmospheric CO2. The researchers discovered that microbes respire three times as much CO2 from lignin carbons (non-sugar aromatic units) compared to cellulose carbons (glucose sugar units), which both add structure and support to plants’ cellular walls.

These findings help disentangle the role of microbes in soil carbon cycling — information that could help improve predictions of how carbon in soil will affect climate change.

Caption: Image of soil with a close-up of a bacterium and the cellular pathways involved in carbon dioxide productions. Available substrates from soil organic matter are processed through specific pathways with different amount of carbon dioxide output flux.. Credit: Aristilde Lab/Northwestern University

A June 11, 2024 Northwestern University news release (also received via email and on EurekAlert), which originated the news item, explains what this research means, Note: Links have been removed,

“The carbon pool that’s stored in soil is about 10 times the amount that’s in the atmosphere,” said Northwestern University’s Ludmilla Aristilde, who led the study. “What happens to this reservoir will have an enormous impact on the planet. Because microbes can unlock this carbon and turn it into atmospheric CO2, there is a huge interest in understanding how they metabolize plant waste. As temperatures rise, more organic matter of different types will become available in soil. That will affect the amount of CO2 that is emitted from microbial activities.”

An expert in the dynamics of organics in environmental processes, Aristilde is an associate professor of civil and environmental engineering at Northwestern’s McCormick School of Engineering and is a member of the Center for Synthetic Biology and of the Paula M. Trienens Institute for Sustainability and Energy. Caroll Mendonca, a former Ph.D. candidate in Aristilde’s laboratory, is the paper’s first author. The study includes collaborators from the University of Chicago.

‘Not all pathways are created equally’

The new study builds upon ongoing work in Aristilde’s laboratory to understand how soil stores — or releases — carbon. Although previous researchers typically tracked how broken-down compounds from plant matter move individually through bacteria, Aristilde’s team instead used a mixture of these compounds to represent what bacteria are exposed to in the natural environment. Then, to track how different plant derivatives moved through a bacterium’s metabolism, the researchers tagged individual carbon atoms with isotope labels.

“Isotope labeling allowed us to track carbon atoms specific to each compound type inside the cell,” Aristilde said. “By tracking the carbon routes, we were able to capture their paths in the metabolism. That is important because not all pathways are created equally in terms of producing carbon dioxide.”

Sugar carbons in cellulose, for example, traveled through glycolytic and pentose-phosphate pathways. These pathways lead to metabolic reactions that convert digested matter into carbons to make DNA and proteins, which build the microbe’s own biomass. But aromatic, non-sugar carbons from lignin traveled a different route — through the tricarboxylic acid cycle.

“The tricarboxylic acid cycle exists in all forms of life,” Aristilde said. “It exists in plants, microbes, animals and humans. While this cycle also produces precursors for proteins, it contains several reactions that produce CO2. Most of the CO2 that gets respired from metabolism comes from this pathway.”

Expanding the findings

After tracking the routes of metabolism, Aristilde and her team performed quantitative analysis to determine the amount of CO2 produced from different types of plant matter. After consuming a mixture of plant matter, microbes respired three times as much CO2 from carbons derived from lignin compared to carbons derived from cellulose.

“Even though microbes consume these carbons at the same time, the amount of CO2 generated from each carbon type is disproportionate,” Aristilde said. “That’s because the carbon is processed via two different metabolic pathways.”

In the initial experiments, Aristilde and her team used Pseudomonas putida, a common soil bacterium with a versatile metabolism. Curious to see if their findings applied to other bacteria, the researchers studied data from previous experiments in scientific literature. They found the same relationship they discovered among plant matter, metabolism and CO2 manifested in other soil bacteria.

“We propose a new metabolism-guided perspective for thinking about how different carbon structures accessible to soil microbes are processed,” Aristilde said. “That will be key in helping us predict what will happen with the soil carbon cycle with a changing climate.”

The study, “Disproportionate carbon dioxide efflux in bacterial metabolic pathways for different organic substrates leads to variable contribution to carbon use efficiency,” was supported by the National Science Foundation (grant numbers CBET-1653092 and CBET-2022854).

Here’s a link to and a citation for the paper,

Disproportionate Carbon Dioxide Efflux in Bacterial Metabolic Pathways for Different Organic Substrates Leads to Variable Contribution to Carbon-Use Efficiency by Caroll M. Mendonca, Lichun Zhang, Jacob R. Waldbauer, and Ludmilla Aristilde. Environ. Sci. Technol. 2024, 58, 25, 11041–11052 DOI: https://doi.org/10.1021/acs.est.4c01328 Publication Date:June 11, 2024 Copyright © 2024 The Authors. Published by American Chemical Society.

This paper is open access and has a Creative Commons licence: CC-BY-NC-ND 4.0..

Using copper to mitigate climate change?

A July 4, 2024 news item on phys.org announces research into copper that mitigates climate change,

Carbon in the atmosphere is a major driver of climate change. Now researchers from McGill University have designed a new catalyst for converting carbon dioxide (CO2) into methane—a cleaner source of energy—using tiny bits of copper called nanoclusters. While the traditional method of producing methane from fossil fuels introduces more CO2 into the atmosphere, the new process, electrocatalysis, does not.

A July 4, 2024 Canadian Light Source (CLS) news release (also received via email) by Rowan Hollinger, which originated the news item, delves further into the research, Note: A link has been removed,

“On sunny days you can use solar power, or when it’s a windy day you can use that wind to produce renewable electricity, but as soon as you produce that electricity you need to use it,” says Mahdi Salehi, Ph.D. candidate at the Electrocatalysis Lab at McGill University. “But in our case, we can use that renewable but intermittent electricity to store the energy in chemicals like methane.”

By using copper nanoclusters, says Salehi, carbon dioxide from the atmosphere can be transformed into methane and once the methane is used, any carbon dioxide released can be captured and “recycled” back into methane. This would create a closed “carbon loop” that does not emit new carbon dioxide into the atmosphere. The research, published recently in the journal Applied Catalysis B: Environment and Energy, was enabled by the Canadian Light Source (CLS) at the University of Saskatchewan (USask).

“In our simulations, we used copper catalysts with different sizes, from small ones with only 19 atoms to larger ones with 1000 atoms,” says Salehi. “We then tested them in the lab, focusing on how the sizes of the clusters influenced the reaction mechanism.”

“Our top finding was that extremely small copper nanoclusters are very effective at producing methane,” continues Salehi. “This was a significant discovery, indicating that the size and structure of the copper nanoclusters play a crucial role in the reaction’s outcome.”

The team plans to continue refining their catalyst to make it more efficient and investigate its large-scale, industrial applications. Their hope is that their findings will open new avenues for producing clean, sustainable energy.

Researcher Mahdi Salehi describes his work in a video provided by the Canadian Light Source (CLS),

Here’s a link to and a citation for the paper,

Copper nanoclusters: Selective CO2 to methane conversion beyond 1 A/cm² by Mahdi Salehi, Hasan Al-Mahayni, Amirhossein Farzi, Morgan McKee, Sepideh Kaviani, Elmira Pajootan, Roger Lin, Nikolay Kornienko, Ali Seifitokaldani. Applied Catalysis B: Environment and Energy Volume 353, 15 September 2024, 124061 DOI: https://doi.org/10.1016/j.apcatb.2024.124061 Available online 9 April 2024, Version of Record 12 April 2024.

This paper is open access. Under a Creative Commons license

Climate change and black gold

A July 3, 2019 news item on Nanowerk describes research coming from India and South Korea where nano gold is turned into black nanogold (Note: A link has been removed),

One of the main cause of global warming is the increase in the atmospheric CO2 level. The main source of this CO2 is from the burning of fossil fuels (electricity, vehicles, industry and many more).

Researchers at TIFR [Tata Institute of Fundamental Research] have developed the solution phase synthesis of Dendritic Plasmonic Colloidosomes (DPCs) with varying interparticle distances between the gold Nanoparticles (AU NPs) using a cycle-by-cycle growth approach by optimizing the nucleation-growth step. These DPCs absorb the entire visible and near-infrared region of solar light, due to interparticle plasmonic coupling as well as the heterogeneity in the Au NP [gold nanoparticle] sizes, which transformed golden gold material to black gold (Chemical Science, “Plasmonic colloidosomes of black gold for solar energy harvesting and hotspots directed catalysis for CO2 to fuel conversion”).

A July 3, 2019 Tata Institute of Fundamental Research (TIFR) press release on EurekAlert, which originated the news item, provides more technical detail,

Black (nano)gold was able to catalyze CO2 to methane (fuel) conversion at atmospheric pressure and temperature, using solar energy. They also observed the significant effect of the plasmonic hotspots on the performance of these DPCs for the purification of seawater to drinkable water via steam generation, temperature jump assisted protein unfolding, oxidation of cinnamyl alcohol using pure oxygen as the oxidant, and hydrosilylation of aldehydes.

This was attributed to varying interparticle distances and particle sizes in these DPCs. The results indicate the synergistic effects of EM and thermal hotspots as well as hot electrons on DPCs performance. Thus, DPCs catalysts can effectively be utilized as Vis-NIR light photo-catalysts, and the design of new plasmonic nanocatalysts for a wide range of other chemical reactions may be possible using the concept of plasmonic coupling.

Raman thermometry and SERS (Surface-enhanced Raman Spectroscopy) provided information about the thermal and electromagnetic hotspots and local temperatures which was found to be dependent on the interparticle plasmonic coupling. The spatial distribution of the localized surface plasmon modes by STEM-EELS plasmon mapping confirmed the role of the interparticle distances in the SPR (Surface Plasmon Resonance) of the material.

Thus, in this work, by using the techniques of nanotechnology, the researchers transformed golden gold to black gold, by changing the size and gaps between gold nanoparticles. Similar to the real trees, which use CO2, sunlight and water to produce food, the developed black gold acts like an artificial tree that uses CO2, sunlight and water to produce fuel, which can be used to run our cars. Notably, black gold can also be used to convert sea water into drinkable water using the heat that black gold generates after it captures sunlight.

This work is a way forward to develop “Artificial Trees” which capture and convert CO2 to fuel and useful chemicals. Although at this stage, the production rate of fuel is low, in coming years, these challenges can be resolved. We may be able to convert CO2 to fuel using sunlight at atmospheric condition, at a commercially viable scale and CO2 may then become our main source of clean energy.

Here’s an image illustrating the work

Caption: Use of black gold can get us one step closer to combat climate change. Credit: Royal Society of Chemistry, Chemical Science

A July 3, 2019 Royal Society of Chemistry Highlight features more information about the research,

A “black” gold material has been developed to harvest sunlight, and then use the energy to turn carbon dioxide (CO2) into useful chemicals and fuel.

In addition to this, the material can also be used for applications including water purification, heating – and could help further research into new, efficient catalysts.

“In this work, by using the techniques of nanotechnology, we transformed golden gold to black gold, by simply changing the size and gaps between gold nanoparticles,” said Professor Vivek Polshettiwar from Tata Institute of Fundamental Research (TIFR) in India.

Tuning the size and gaps between gold nanoparticles created thermal and electromagnetic hotspots, which allowed the material to absorb the entire visible and near-infrared region of sunlight’s wavelength – making the gold “black”.

The team of researchers, from TIFR and Seoul National University in South Korea, then demonstrated that this captured energy could be used to combat climate change.

Professor Polshettiwar said: “It not only harvests solar energy but also captures and converts CO2 to methane (fuel). Synthesis and use of black gold for CO2-to-fuel conversion, which is reported for the first time, has the potential to resolve the global CO2 challenge.

“Now, like real trees which use CO2, sunlight and water to produce food, our developed black gold acts like an artificial tree to produce fuel – which we can use to run our cars,” he added.
Although production is low at this stage, Professor Polshettiwar (who was included in the RSC’s 175 Faces of Chemistry) believes that the commercially-viable conversion of CO2 to fuel at atmospheric conditions is possible in the coming years.

He said: “It’s the only goal of my life – to develop technology to capture and convert CO2 and combat climate change, by using the concepts of nanotechnology.”

Other experiments described in the Chemical Science paper demonstrate using black gold to efficiently convert sea water into drinkable water via steam generation.

It was also used for protein unfolding, alcohol oxidation, and aldehyde hydrosilylation: and the team believe their methodology could lead to novel and efficient catalysts for a range of chemical transformations.

Here’s a link to and a citation for the paper,

Plasmonic colloidosomes of black gold for solar energy harvesting and hotspots directed catalysis for CO2 to fuel conversion by Mahak Dhiman, Ayan Maity, Anirban Das, Rajesh Belgamwar, Bhagyashree Chalke, Yeonhee Lee, Kyunjong Sim, Jwa-Min Nam and Vivek Polshettiwar. Chem. Sci., 2019, Advance Article. DOI: 10.1039/C9SC02369K First published on July 3, 2019

This paper is freely available in the open access journal Chemical Science.

Discovering why nanoscale gold has catalytic properties

Gold’s glitter may have inspired poets and triggered wars, but its catalytic prowess has helped make chemical reactions greener and more efficient. (Image courtesy of iStock/sbayram) [downloaded from http://www1.lehigh.edu/news/scientists-uncover-secret-gold%E2%80%99s-catalytic-powers

Gold’s glitter may have inspired poets and triggered wars, but its catalytic prowess has helped make chemical reactions greener and more efficient. (Image courtesy of iStock/sbayram) [downloaded from http://www1.lehigh.edu/news/scientists-uncover-secret-gold%E2%80%99s-catalytic-powers

A Sept. 27, 2016 news item on phys.org describes a discovery made by scientists at Lehigh University (US),

Settling a decades-long debate, new research conclusively shows that a hierarchy of active species exists in gold on iron oxide catalysis designed for low temperature carbon monoxide oxidation; Nanoparticles, sub-nanometer clusters and dispersed atoms—as well as how the material is prepared—are all important for determining catalytic activity.

A Sept. 27, 2016 Lehigh University news release by Lori Friedman, which originated the news item, provides more information about the discovery that gold nanoparticles can be used in catalysis and about the discovery of why that’s possible,

Christopher J. Kiely calls the 1982 discovery by Masatake Haruta that gold (Au) possessed a high level of catalytic activity for carbon monoxide (CO) oxidation when deposited on a metal-oxide “a remarkable turn of events in nanotechnology”—remarkable because gold had long been assumed to be inert for catalysis.

Haruta showed that gold dispersed on iron oxide effectively catalyzed the conversion of harmful carbon monoxide into more benign carbon dioxide (CO2) at room temperatures—a reaction that is critical for the construction of fire fighters’ breathing masks and for removal of CO from hydrogen feeds for fuel cells. In fact, today gold catalysts are being exploited in a major way for the greening of many important reactions in the chemical industry, because they can lead to cleaner, more efficient reactions with fewer by-products.

Haruta and Graham J. Hutchings, who co-discovered the use of gold as a catalyst for different reactions, are noted as Thompson Reuters Citation Laureates and appear annually on the ScienceWatch Nobel Prize prediction list. Their pioneering work opened up a new area of scientific inquiry and kicked off a decades-long debate about which type of supported gold species are most effective for the CO oxidation reaction.

In 2008, using electron microscopy technology that was not yet available in the 1980s and ’90 s, Hutchings, the director of the Cardiff Catalysis Institute at Cardiff University worked with Kiely, the Harold B. Chambers Senior Professor Materials Science and Engineering at Lehigh, examined the structure of supported gold at the nanoscale. One nanometer (nm) is equal to one one-billionth of a meter or about the diameter of five atoms.

Using what was then a rare piece of equipment—Lehigh’s aberration-corrected JEOL 2200 FS scanning transmission electron microscope (STEM)—the team identified the co-existence of three distinct gold species: facetted nanoparticles larger than one nanometer in size, sub-clusters containing less than 20 atoms and individual gold atoms strewn over the support. Because only the larger gold nanoparticles had previously been detected, this created debate as to which of these species were responsible for the good catalytic behavior.

Haruta, professor of applied chemistry at Tokyo Metropolitan University, Hutchings and Kiely have been working collaboratively on this problem over recent years and are now the first to demonstrate conclusively that it is not the particles or the individual atoms or the clusters which are solely responsible for the catalysis—but that they all contribute to different degrees. Their results have been published in an article in Nature Communications titled: “Population and hierarchy of active species in gold iron oxide catalysts for carbon monoxide oxidation.”

“All of the species tend to co-exist in conventionally prepared catalysts and show some level of activity,” says Kiely. “They all do something—but some less efficiently than others.”

Their research revealed the sub-nanometer clusters and 1-3nm nanoparticles to be the most efficient for catalyzing this CO oxidation reaction, while larger particles were less so and the atoms even less.  Nevertheless, Kiely cautions, all the species present need to be considered to fully explain the overall measured activity of the catalyst.

Among the team’s other key findings: the measured activity of gold on iron oxide catalysts is exquisitely dependent on exactly how the material is prepared. Very small changes in synthesis parameters  influence the relative proportion and spatial distribution of these various Au species on the support material and thus have a big impact on its overall catalytic performance.

A golden opportunity

Building on their earlier work (published in a 2008 Science article), the team sought to find a robust way to quantitatively analyze the relative population distributions of nanoparticles of various sizes, sub-nm clusters and highly dispersed atoms in a given gold on iron oxide sample. By correlating this information with catalytic performance measurements, they then hoped to determine which species distribution would be optimal to produce the most efficient catalyst, in order to utilize the precious gold component in the most cost effective way.

Ultimately, it was a catalyst synthesis problem the team faced that offered them a golden opportunity to do just that.

During the collaboration, Haruta’s and Hutchings’ teams each prepared gold on iron oxide samples in their home labs in Tokyo and Cardiff. Even though both groups nominally utilized the same ‘co-precipitation’ synthesis method, it turned out that a final heat treatment step was beneficial to the catalytic performance for one set of materials but detrimental to the other. This observation provided a fascinating scientific conundrum that detailed electron microscopy studies performed by Qian He, one of Kiely’s PhD students at the time, was key to solving. Qian He is now a University Research Fellow at Cardiff University leading their electron microscopy effort.

“In the end, there were subtle differences in the order and speed in which each group added in their ingredients while preparing the material,” explains He. “When examined under the electron microscope, it was clear that the two slightly different methods produced quite different distributions of particles, clusters and dispersed atoms on the support.”

“Very small variations in the preparation route or thermal history of the sample can alter the relative balance of supported gold nanoparticles-to-clusters-to-atoms in the material and this manifests itself in the measured catalytic activity,” adds Kiely.

The group was able to compare this set of materials and correlate the Au species distributions with catalytic performance measurements, ultimately identifying the species distribution that was associated with greater catalytic efficiency.

Now that the team has identified the catalytic activity hierarchy associated with these supported gold species, the next step, says Kiely, will be to modify the synthesis method to positively influence that distribution to optimize the catalyst performance while making the most efficient use of the precious gold metal content.

“As a next stage to this study we would like to be able to observe gold on iron oxide materials in-situ within the electron microscope while the reaction is happening,” says Kiely.

Once again, it is next generation microscopy facilities that may hold the key to fulfilling gold’s promise as a pivotal player in green technology.

Despite the link to the paper already in the news release, here’s one that includes a citation,

Identification of Active Gold Nanoclusters on Iron Oxide Supports for CO Oxidation by Andrew A. Herzing, Christopher J. Kiely, Albert F. Carley, Philip Landon, Graham J. Hutchings. Science  05 Sep 2008: Vol. 321, Issue 5894, pp. 1331-1335 DOI: 10.1126/science.1159639

This paper is currently behind a paywall but, if you can wait one year, free access can be gained if you register (for free) with Science.