Tag Archives: Greg Engel

Superposition in biological processes

Applying the concept of superposition to photosynthesis and olfaction is not the first thought that would have occurred to me on stumbling across the European Union’s PAPETS project (Phonon-Assisted Processes for Energy Transfer and Sensing). Thankfully, a July 9, 2015 news item on Nanowerk sets the record straight (Note: A link has been removed),

Quantum physics is helping researchers to better understand photosynthesis and olfaction.

Can something be for instance in two different places at the same time? According to quantum physics, it can. More precisely, in line with the principle of ‘superposition’, a particle can be described as being in two different states simultaneously.

While it may sound like voodoo to the non-expert, superposition is based on solid science. Researchers in the PAPETS project are exploring this and other phenomena on the frontier between biology and quantum physics. Their goal is to determine the role of vibrational dynamics in photosynthesis and olfaction.

A July 7, 2015 research news article on the CORDIS website, which originated the news item, further explains (Note: A link has been removed),

Quantum effects in a biological system, namely in a photosynthetic complex, were first observed by Greg Engel and collaborators in 2007, in the USA. These effects were reproduced in different laboratories at a temperature of around -193 degrees Celsius and subsequently at ambient temperature.

‘What’s surprising and exciting is that these quantum effects have been observed in biological complexes, which are large, wet and noisy systems,’ says PAPETS project coordinator, Dr. Yasser Omar, researcher at Instituto de Telecomunicações and professor at Universidade de Lisboa [Portugal]. ‘Superposition is fragile and we would expect it to be destroyed by the environment.’

Superposition contributes to more efficient energy transport. An exciton, a quantum quasi-particle carrying energy, can travel faster along the photosynthetic complex due to the fact that it can exist in two states simultaneously. When it comes to a bifurcation it need not choose left or right. It can proceed down both paths simultaneously.

‘It’s like a maze,’ says Dr. Omar. ‘Only one door leads to the exit but the exciton can probe both left and right at the same time. It’s more efficient.’

Dr. Omar and his colleagues believe that a confluence of factors help superposition to be effected and maintained, namely the dynamics of the vibrating environment, whose role is precisely what the PAPETS project aims to understand and exploit.

Theory and experimentation meet

The theories being explored by PAPETS are also tested in experiments to validate them and gain further insights. To study quantum transport in photosynthesis, for example, researchers shoot fast laser pulses into biological systems. They then observe interference along the transport network, a signature of wavelike phenomena.

‘It’s like dropping stones into a lake,’ explains Dr. Omar. ‘You can then see whether the waves that are generated grow bigger or cancel each other when they meet.’

Applications: more efficient solar cells and odour detection

While PAPETS is essentially an exploratory project, it is generating insights that could have practical applications. PAPETS’ researchers are getting a more fundamental understanding of how photosynthesis works and this could result in the design of much more efficient solar cells.

Olfaction, the capacity to recognise and distinguish different odours, is another promising area. Experiments focus on the behaviour of Drosophila flies. So far, researchers suspect that the tunnelling of electrons associated to the internal vibrations of a molecule may be a signature of odour. Dr. Omar likens this tunnelling to a ping-pong ball resting in a bowl that goes through the side of the bowl to appear outside it.

This work could have applications in the food, water, cosmetics or drugs industries. Better artificial odour sensing could be used to detect impurities or pollution, for example.

‘Unlike seeing, hearing or touching, the sense of smell is difficult to reproduce artificially with high efficacy,’ says Dr. Omar.

The PAPETS project, involving 7 partners, runs from September 2014 to August 2016 and has a budgeted EU contribution funding of EUR 1.8 million.

You can find out more about PAPETS here. In the meantime, I found the other partners in the project (in addition to Portugal), from the PAPETS Partners webpage (Note: Links have been removed),

– Controlled Quantum Dynamics Group, Universität Ulm (UULM), Germany. PI: Martin Plenio and Susana Huelga.
– Biophysics Research Group, Vrije Universiteit Amsterdam (VUA), Netherlands. PI: Rienk van Grondelle and Roberta Croce.
– Department of Chemical Sciences, Università degli Studi di Padova (UNIPD), Italy. PI: Elisabetta Collini.
– Biomedical Sciences Research Centre “Alexander Fleming” (FLEMING), Athens, Greece. PI: Luca Turin and Efthimios M. Skoulakis.
– Biological Physics and Complex Systems Group, Centre National de la Recherche Scientifique (CNRS), Orléans, France. PI: Francesco Piazza.
– Quantum Physics of Biomolecular Processes, University College London (UCL), UK. PI: Alexandra Olaya-Castro.

Nanocrystals by design

A trio of researchers from the University of Chicago are looking for ways to design new atoms or nanocrystals according to the Dec. 5, 2012 news item on ScienceDaily,

Three University of Chicago chemistry professors hope that their separate research trajectories will converge to create a new way of assembling what they call “designer atoms” into materials with a broad array of potentially useful properties and functions.

These “designer atoms” would be nanocrystals — crystalline arrays of atoms intended to be manipulated in ways that go beyond standard uses of atoms in the periodic table. Such arrays would be suited to address challenges in solar energy, quantum computing and functional materials.

The partners in the project are Prof. David Mazziotti, and Associate Professors Greg Engel and Dmitri Talapin. All three have made key advances that are critical for moving the project forward. Now, with $1 million in funding from the W. M. Keck Foundation, they can build on their separate advances in a concerted way toward a new goal.

The Dec. 4, 2012 University of Chicago news release by Stephen Koppes, which originated the news item, provides some excellent descriptions of the science (thank you Stephen), as well as, a description of the work,

Developments in Talapin’s laboratory form the core of the project. A synthetic inorganic chemist, he specializes in creating precisely engineered nanocrystals with well-defined characteristics.

Nanocrystals consist of hundreds or thousands of atoms. This is small enough that new quantum phenomena begin to emerge, but large enough to provide convenient “modules” for the design of new materials. “It’s an interesting combination in that you build materials not from individual atoms, but from the units that resemble atoms in many ways but also behave as a metal, semiconductor or magnet. It’s a bit crazy,” Talapin said.

The potential of the new arrangements may exceed that of existing elements. Chemists cannot tune the properties of hydrogen or helium, for example, but they can tune the properties of nanocrystals.

“You build chemistry from atoms, and quantum mechanics provides principles for doing that,” said Mazziotti, referring to the laws of physics that dominate the world at ultra-small scales. “In the same way, we envision tremendous opportunities in terms of taking nanocrystalline arrays and nanocrystals as the building blocks for new structures where we assemble them into strongly correlated systems.”

The essence of strong correlation, of chemical bonds, of chemistry generally, is the connections between particles and how properties of these particles change as they bind to one another, Engel noted. “It’s about new emerging properties coming from strong mixing between the electronic states of particles, the same way two atoms come together to make a molecule,” he said.

Hydrogen and oxygen gases have very different properties. Yet when two hydrogen atoms share electrons with an oxygen atom, they form water. The UChicago trio’s ambition is to extend this framework from the level of individual atoms to the level of small, functional objects, such as metal or magnetic semiconductors.

The key to their project is controlling the degree of correlation between electrons on different nanocrystals. In 2009, Talapin and his collaborators developed a way to control the motions of electrons as they move from one nanocrystal to the next. Their “electronic glue” enables semiconductor nanocrystals to efficiently transfer their electric charges to one another, an important step in the synthesis of new materials.

Achieving greater control of correlated electrons—those whose motions are linked to each other—on different nanocrystals is the key to success in the Keck project.

Mazziotti and Engel bring theoretical and spectroscopic advances, respectively, to the collaboration. Mazziotti’s advance provides an alternative to traditional approaches to computing strongly correlated electrons in molecules, which scale exponentially with the number of electrons. He has solved a longstanding problem that enables calculations using just two of a molecule’s electrons, which dramatically decreases the computational cost.

His studies of firefly bioluminescence and other phenomena have shown that as molecular systems grow larger, strong correlations between electrons grow more powerful and open new possibilities for emergent behavior. In the context of a semiconducting material such as silicon, emergent behavior is how individual nanoparticles effectively lose their identity, giving rise to collective properties in new materials.

“As the size of a molecular system increases, we see the emergence of new physics behavior and the importance of strong correlation of electrons,” Mazziotti said. “The importance of strong correlation increases dramatically with system size.”

The advance in Engel’s research group was the development of a technique called GRadient-Assisted Photon Echo (GRAPE) spectroscopy, which borrows ideas from magnetic resonance imaging but is used for spectroscopy rather than medical imaging. Engel already has used GRAPE to observe the correlated motion and coupling between chromophores, which are light-absorbing molecules. Now he will apply the technique to nanocrystals.

Over the last 10 days or so, there have been a number of gobsmacking developments, including this one.