Tag Archives: taxonomy

Taxonomies (classification schemes) rouse passions

There seems to have been some lively debate among biologists about matters most of us treat as invisible: naming, establishing, and classifying categories. These activities can become quite visible when learning a new language, e.g., French which divides nouns into two genders or German which classifies nouns with any of three genders.

A July 26, 2020 essay by Stephen Garnett (Professor of Conservation and Sustainable Livelihoods, Charles Darwin University, Australia), Les Christidis (Professor, Southern Cross University, Australia), Richard L. Pyle (Associate lecturer, University of Hawaii, US), and Scott Thomson (Research associate, Universidade de São Paulo, Brazil) for The Conversation (also on phys.org but published July 27, 2020) describes a very heated debate over taxonomy,

Taxonomy, or the naming of species, is the foundation of modern biology. It might sound like a fairly straightforward exercise, but in fact it’s complicated and often controversial.

Why? Because there’s no one agreed list of all the world’s species. Competing lists exist for organisms such as mammals and birds, while other less well-known groups have none. And there are more than 30 definitions of what constitutes a species [emphasis mine]. This can make life difficult for biodiversity researchers and those working in areas such as conservation, biosecurity and regulation of the wildlife trade.

In the past few years, a public debate erupted among global taxonomists, including those who authored and contributed to this article, about whether the rules of taxonomy should be changed. Strongly worded ripostes were exchanged. A comparison to Stalin [emphasis mine] was floated.

Here’s how it started,

In May 2017 two of the authors, Stephen Garnett and Les Christidis, published an article in Nature. They argued taxonomy needed rules around what should be called a species, because currently there are none. They wrote:

” … for a discipline aiming to impose order on the natural world, taxonomy (the classification of complex organisms) is remarkably anarchic […] There is reasonable agreement among taxonomists that a species should represent a distinct evolutionary lineage. But there is none about how a lineage should be defined.

‘Species’ are often created or dismissed arbitrarily, according to the individual taxonomist’s adherence to one of at least 30 definitions. Crucially, there is no global oversight of taxonomic decisions — researchers can ‘split or lump’ species with no consideration of the consequences.”

Garnett and Christidis proposed that any changes to the taxonomy of complex organisms be overseen by the highest body in the global governance of biology, the International Union of Biological Sciences (IUBS), which would “restrict […] freedom of taxonomic action.”

… critics rejected the description of taxonomy as “anarchic”. In fact, they argued there are detailed rules around the naming of species administered by groups such as the International Commission on Zoological Nomenclature and the International Code of Nomenclature for algae, fungi, and plants. For 125 years, the codes have been almost universally adopted by scientists.

So in March 2018, 183 researchers – led by Scott Thomson and Richard Pyle – wrote an animated response to the Nature article, published in PLoS Biology [PLoS is Public Library of Science; it is an open access journal].

They wrote that Garnett and Christidis’ IUBS proposal was “flawed in terms of scientific integrity […] but is also untenable in practice”. They argued:

“Through taxonomic research, our understanding of biodiversity and classifications of living organisms will continue to progress. Any system that restricts such progress runs counter to basic scientific principles, which rely on peer review and subsequent acceptance or rejection by the community, rather than third-party regulation.”

In a separate paper, another group of taxonomists accused Garnett and Christidis of trying to suppress freedom of scientific thought, likening them to Stalin’s science advisor Trofim Lysenko.

The various parties did come together,

We hope by 2030, a scientific debate that began with claims of anarchy might lead to a clear governance system – and finally, the world’s first endorsed global list of species.

As for how they got to a “clear governance system”, there’s the rest of the July 26, 2020 essay on The Conversation or there’s the copy on phys.org (published July 27, 2020).

Fantastic Fungi Futures: a multi-night ArtSci Salon event in late November/early December 2019 in Toronto

In fact, I have two items about fungi and I’m starting with the essay first.

Giving thanks for fungi

These foods are all dependent on microorganisms for their distinctive flavor. Credit: margouillat photo/Shutterstock.com

Antonis Rokas, professor at Venderbilt University (Nashville, Tennessee, US), has written a November 25, 2019 essay for The Conversation (h/t phys.org Nov.26.19) featuring fungi and food, Note: Links have been removed),

I am an evolutionary biologist studying fungi, a group of microbes whose domestication has given us many tasty products. I’ve long been fascinated by two questions: What are the genetic changes that led to their domestication? And how on Earth did our ancestors figure out how to domesticate them?

The hybrids in your lager

As far as domestication is concerned, it is hard to top the honing of brewer’s yeast. The cornerstone of the baking, brewing and wine-making industries, brewer’s yeast has the remarkable ability to turn the sugars of plant fruits and grains into alcohol. How did brewer’s yeast evolve this flexibility?

By discovering new yeast species and sequencing their genomes, scientists know that some yeasts used in brewing are hybrids; that is, they’re descendants of ancient mating unions of individuals from two different yeast species. Hybrids tend to resemble both parental species – think of wholpins (whale-dolphin) or ligers (lion-tiger).

… What is still unknown is whether hybridization is the norm or the exception in the yeasts that humans have used for making fermented beverages for millennia.

To address this question, a team led by graduate student Quinn Langdon at the University of Wisconsin and another team led by postdoctoral fellow Brigida Gallone at the Universities of Ghent and Leuven in Belgium examined the genomes of hundreds of yeasts involved in brewing and wine making. Their bottom line? Hybrids rule.

For example, a quarter of yeasts collected from industrial environments, including beer and wine manufacturers, are hybrids.

The mutants in your cheese

Comparing the genomes of domesticated fungi to their wild relatives helps scientists understand the genetic changes that gave rise to some favorite foods and drinks. But how did our ancestors actually domesticate these wild fungi? None of us was there to witness how it all started. To solve this mystery, scientists are experimenting with wild fungi to see if they can evolve into organisms resembling those that we use to make our food today.

Benjamin Wolfe, a microbiologist at Tufts University, and his team addressed this question by taking wild Penicillium mold and growing the samples for one month in his lab on a substance that included cheese. That may sound like a short period for people, but it is one that spans many generations for fungi.

The wild fungi are very closely related to fungal strains used by the cheese industry in the making of Camembert cheese, but look very different from them. For example, wild strains are green and smell, well, moldy compared to the white and odorless industrial strains.

For Wolfe, the big question was whether he could experimentally recreate, and to what degree, the process of domestication. What did the wild strains look and smell like after a month of growth on cheese? Remarkably, what he and his team found was that, at the end of the experiment, the wild strains looked much more similar to known industrial strains than to their wild ancestor. For example, they were white in color and smelled much less moldy.

… how did the wild strain turn into a domesticated version? Did it mutate? By sequencing the genomes of both the wild ancestors and the domesticated descendants, and measuring the activity of the genes while growing on cheese, Wolfe’s team figured out that these changes did not happen through mutations in the organisms’ genomes. Rather, they most likely occurred through chemical alterations that modify the activity of specific genes but don’t actually change the genetic code. Such so-called epigenetic modifications can occur much faster than mutations.

Fantastic Fungi Futures (FFF) Nov. 29, Dec. 1, and Dec. 4, 2019 events in Toronto, Canada

The ArtSci Salon emailed me a November 23, 2019 announcement about a special series being presented in partnership with the Mycological Society of Toronto (MST) on the topic of fungi,

Fantastic Fungi Futures a discussion, a mini exhibition, a special screening, and a workshop revolving around Fungi and their versatile nature.

NOV 29 [2019], 6:00-8:00 PM Fantastic Fungi Futures (FFF): a roundtable discussion and popup exhibition.

Join us for a roundtable discussion. what are the potentials of fungi? Our guests will share their research, as well as professional and artistic practice dealing with the taxonomy and the toxicology, the health benefits and the potentials for sustainability, as well as the artistic and architectural virtues of fungi and mushrooms. The Exhibition will feature photos and objects created by local and Canadian artists who have been working with mushrooms and fungi.

This discussion is in anticipation of the special screening of Fantastic Fungi at the HotDocs Cinema on Dec 1 [2019] our guests:James Scott,Occupational & Environmental Health, Dalla Lana School of Public Health, UofT; Marshall Tyler, Director of Research, Field Trip, Toronto; Rotem Petranker, PhD student, Social Psychology, York University; Nourin Aman, PhD student, fungal biology and Systematics lab, Punjab University; Sydney Gram, PhD student, Ecology & Evolutionary Biology student researcher (UofT/ROM); [and] Tosca Teran, Interdisciplinary artist.

DEC. 1 [2019], 6:15 pm join us to the screening of Fantastic Fungi, at the HotDocs Cinemaget your tickets herehttps://boxoffice.hotdocs.ca/websales/pages/info.aspx?evtinfo=104145~fff311b7-cdad-4e14-9ae4-a9905e1b9cb0 afterward, some of us will be heading to the Pauper’s Pub, just across from the HotDocs Cinema

DEC. 4 [2019], 7:00-10:00PM Multi-species entanglements:Sculpting with Mycelium, @InterAccess, 950 Dupont St., Unit 1 

This workshop is a continuation of ArtSci Salon’s Fantastic Fungi Futures event and the HotDocs screening of Fantastic Fungi.this workshop is open to public to attend, however, pre-registration is required. $5.00 to form a mycelium bowl to take home.

During this workshop Tosca Teran introduces the amazing potential of Mycelium for collaboration at the intersection of art and science. Participants learn how to transform their kitchens and closets in to safe, mini-Mycelium biolabs and have the option to leave the workshop with a live Mycelium planter/bowl form, as well as a wide array of possibilities of how they might work with this sustainable bio-material. 

Bios

Nourin Aman is a PhD student at fungal biology and Systematics lab at Punjab University, Lahore, Pakistan. She is currently a visiting PhD student at the Mycology lab, Royal Ontario Museum. Her research revolves around comparison between macrofungal biodiversity of some reserve forests of Punjab, Pakistan.Her interest is basically to enlist all possible macrofungi of reserve forests under study and describe new species as well from area as our part of world still has many species to be discovered and named. She will be discussing factors which are affecting the fungal biodiversity in these reserve forests.

Sydney Gram is an Ecology & Evolutionary Biology student researcher (UofT/ROM)

Rotem Petranker- Bsc in psychology from the University of Toronto and a MA in social psychology from York University. Rotem is currently a PhD student in York’s clinical psychology program. His main research interest is affect regulation, and the way it interacts with sustained attention, mind wandering, and creativity. Rotem is a founding member oft the Psychedelic Studies Research Program at the University of Toronto, has published work on microdosing, and presented original research findings on psychedelic research in several conferences. He feels strongly that the principles of Open Science are necessary in order to do good research, and is currently in the process of starting the first lab study of microdosing in Canada.

James Scott– PhD, is a ARMCCM Professor and Head Division of Occupational & Environmental Health, Dalla Lana School of Public Health, University of TorontoUAMH Fungal Biobank: http://www.uamh.caUniversity Profile: http://www.dlsph.utoronto.ca/faculty-profile/scott-james-a/Research Laboratory: http://individual.utoronto.ca/jscottCommercial Laboratory: http://www.sporometrics.com

Marshall Tyler– Director of Research, Field Trip. Marshall is a scientist with a deep interest in psychoactive molecules. His passion lies in guiding research to arrive at a deeper understanding of consciousness with the ultimate goal of enhancing wellbeing. At Field Trip, he is helping to develop a lab in Jamaica to explore the chemical and biological complexities of psychoactive fungi.

Tosca Teran, aka Nanotopia, is an Multi-disciplinary artist. Her work has been featured at SOFA New York, Culture Canada, and The Toronto Design Exchange. Tosca has been awarded artist residencies with The Ayatana Research Program in Ottawa and The Icelandic Visual Artists Association through Sím, Reykjavik Iceland and Nes artist residency in Skagaströnd, Iceland. In 2019 she was one of the first Bio-Artists in residence at the Museum of Contemporary Art Toronto in partnership with the Ontario Science Centre as part of the Alien Agencies Collective. A recipient of the 2019 BigCi Environmental Award at Wollemi National Park within the UNESCO World Heritage site in the Greater Blue Mountains. Tosca started collaborating artistically with Algae, Physarum polycephalum, and Mycelium in 2016, translating biodata from non-human organisms into music.@MothAntler @nanopodstudio www.toscateran.com www.nanotopia.net8 

A trailer has been provided for the movie mentioned in the announcement (from the Fantastic Fungi screening webpage on the Mycological Society of Toronto website),

You can find the ArtSci Salon here and the Mycological Society of Toronto (MST) here.

The sense of beauty: an art/science film about CERN, the European Particle Physics Laboratory, in Vancouver, Canada; art/sci September in Toronto (Canada), a science at the bar night in Vancouver (Canada), and a festival in Calgary (Canada)

Compared to five or more years ago, there’s a lollapalooza of art/sci (or sciart) events coming up in September 2018. Of course, it’s helpful if you live in or are visiting Toronto or Vancouver or Calgary at the right time.  All of these events occur from mid September (roughly) to the end of September. In no particular date order:

Sense of beauty in Vancouver

The September 10, 2018 Dante Alighieri Society of British Columbia invitation (received via email) offered more tease than information. Happily, the evite webpage for “The Sense of Beauty: Art and Science at CERN” (2017) by Valerio Jalongo filled in the details,

The Dante Alighieri Society of British Columbia

Invites you to the screening of the documentary

“The Sense of Beauty: Art and Science at CERN” (2017) by Valerio Jalongo

TUESDAY, SEPTEMBER 25, 2018 at 6:30 pm

The CINEMATHEQUE – 1131 Howe Street, Vancouver

Duration of film: 75’. Director in attendance; Q&A with the film director to follow the screening

Free Admission

RSVP: info@dantesocietybc.ca

Director Jalongo will discuss the making of his documentary in a seminar open to the public on September 24 (1:00-2:30 pm) at UBC  [University of British Columbia] (Buchanan Penthouse, *1866 Main Maill, Block C, 5th floor*, Vancouver).

The Sense of Beauty is the story of an unprecedented experiment that involves scientists from throughout the world collaborating around the largest machine ever constructed by human beings: the LHC (Large Hadron Collider). As the new experiment at CERN proceeds in its exploration of the mysterious energy that animates the universe, scientists and artists guide us towards the shadow line where science and art, in different ways, pursue truth and beauty.

Some of these men and women believe in God, while others believe only in experiment and doubt. But in their search for truth they are all alert to an elusive sixth – or seventh – sense: the sense of beauty. An unmissable opportunity for lovers of science, of beauty, or of both.

Rome-born Valerio Jalongo is a teacher, screenwriter and director who works in cinema and TV, for which he created works of fiction and award-winning documentaries. Among them: Sulla mia pelle (On My Skin, 2003) and La scuola è finita (2010), starring Valeria Golino, on the difficulties facing public schools in Italy.

This event is presented by the Dante Alighieri Society of BC in collaboration with the Consulate General of Italy in Vancouver and in association with ARPICO (www.arpico.ca), the Society of Italian Researchers and Professionals in Western Canada.

RSVP: info@dantesocietybc.ca

I searched for more information both about the film and about the seminar at UBC. I had no luck with the UBC seminar but I did find more about the film. There’s an April (?) 2017 synopsis by Luciano Barisone on the Vision du Réel website,

From one cave to another. In prehistoric times, human beings would leave paintings in caves to show their amazement and admiration for the complexity of the world. These reproductions of natural forms were the results of an act of creation and also of mystical gestures which appropriated the soul of things. In another gigantic and modern den, the immense CERN laboratory, the same thing is happening today, a combination of enthralled exploration of the cosmos and an attempt to control it. Valerio Jalongo’s film tackles the big questions that have fascinated poets, artists and philosophers since the dawn of time. Who are we? Where do we come from? Where are we going? The scientists at CERN attempt to answer them through machines that explore matter and search for the origins of life. In their conversations or their words to camera, the meaning of existence thus seems to become a pure question of the laws of physics and mathematical formulae. If only for solving the mystery of the universe a sixth sense is necessary. That of beauty…

There’s also a February 5, 2018 essay by Stefano Caggiano for Interni, which uses a description of the film to launch into a paean to Italian design,

The success of the documentary The Sense of Beauty by Valerio Jalongo, which narrates the ‘aesthetic’ side of the physicists at CERN when faced with the fundamental laws of nature, proves that the yearning for beauty is not just an aspect of art, but something shared by all human efforts to interpret reality.

It is no coincidence that the scientists themselves define the LHC particle accelerator (27 km) as a grand machine for beauty, conceived to investigate the meaning of things, not to perform some practical function. In fact, just as matter can be perceived only through form, and form only if supported by matter (Aristotle already understood this), so the laws of physics can be glimpsed only when they are applied to reality.

This is why in the Large Hadron Collider particles are accelerated to speeds close to that of light, reconstructing the matter-energy conditions just a few instants after the Big Bang. Only in this way is it possible to glimpse the hidden fundamental laws of the universe. It is precisely this evanescence that constitutes ‘beauty.’

The quivering of the form that reveals itself in the matter that conceals it, and which – given the fact that everything originates in the Big Bang – is found everywhere, in the most faraway stars and the closest objects: you just have to know how to prove it, grasp it, how to wait. Because this is the only way to establish relations with beauty: not perceiving it but awaiting it. Respecting its way of offering itself, which consists in denying itself.

Charging the form of an object with this sensation of awaiting, then, means catalyzing the ultimate and primary sense of beauty. And it is what is held in common by the work of the five Italian designers nominated for the Rising Talent Awards of Maison & Object 2018 (with Kensaku Oshiro as the only non-Italian designer, though he does live and work in Milan).

There’s a trailer (published by CERN on November 7, 2017,

It’s in both Italian and English with subtitles throughout, should you need them.

*The address for the Buchanan Penthouse was corrected from: 2329 West Mall to 1866 Main Maill, Block C, 5th floor on Sept. 17, 2018.

Toronto’s ArtSci Salon at Nuit Blanche, Mycology, Wild Bees and Art+Tech!

From a Tuesday, September 11, 2018 Art/Sci Salon announcement (received via email),

Baba Yaga Collective and ArtSci Salon Present:
Chaos Fungorum

In 1747, Carl Linnaeus, known as the “father of taxonomy”, observed
that the seeds of fungus moved in water like fish until “..by a law of
nature thus far unheard of and surpassing all human understanding..,”
they changed back to plant in their adult life.

He proceeded to include fungi in the new genus of “Chaos”. But why
delimiting fungi within categories and boundaries when it is exactly
their fluidity that make them so interesting?

Chaos Fungorum draws on the particular position occupied by fungi and
other hybrid organisms: neither plant nor animal, fungi extend across,
and can entertain, communications and collaborations between animal,
human and industrial realms.

Mixing different artistic practices and media, the artists featured in
this exhibition seek to move beyond rigid comprehensions of the living
by working with, rather than merely shaping, sculpting and manipulating
plants, microorganisms and fungi. Letting the non-human speak is to move
away from an anthropocentric approach to the world: it not only opens to
new rewarding artistic practices, but it also fosters new ideas of
sustainable coexistence, new unusual life collaborations and
adaptations, and new forms of communications and languages.

THE EXHIBITION
September 26 – October 7, 2018

Baba Yaga Collective 906 Queen Street West @Crawford, Toronto

info@babayagacollective.ca

FEATURING

BIO.CHROME COLLECTIVE
Robyn Crouch • Mellissa Fisher • Shavon Madden
Tracy Maurice • Tosca Teran • Alexis Williams

SPECIAL GUEST
Whitefeather Hunter

SPECIAL NUIT BLANCHE OPENING RECEPTION
September 29
6:00 – 9:00 pm

6:30pm: Artsci Salon introduction with Roberta Buiani and Stephen Morris
rethinking categories and the “non-human” in art and science

Followed by artist remarks.
Scientists from the University of Toronto will act as respondent.

9:30pm onward: Tosca Teran & Andrei Gravelle of Nanotopia [emphasis mine]

BIO-SONIFICATIONS: NON-HUMAN COLLABORATIONS Mycelium to MIDI •

Midnight Mushroom music live performance

This Special program is co-presented by The Baba Yaga Collective and
ArtSci Salon. For more information contact artscisalon@gmail.com
https://www.facebook.com/events/1763778620414561/

 All the Buzz on Wild Bee Club!
Summer Speaker Series

Wed Sept 19 at 7pm
High Park Nature Centre,
All the Buzz on Wild Bee Club! – Summer Speaker Series

The speaker series will feature the club’s biologist/leader SUSAN FRYE.
A major component of this club will use the SONIC SOLITARIES AUDIO BEE
CABINET  – an observable nest site for bees in OURSpace – to encompass a
sensory experience with stem nesting bees and wasps, and to record
weekly activity at the cabinet. Pairing magnified views in tandem with
amplified sound via headphones, the cabinet facilitates an enhanced
perception of its tiny inhabitants: solitary bees and wasps and other
nest biota in action, up close. As citizen scientists, we can gather and
record observations to compile them into a database that will contribute
to our growing understanding of native bees, the native (and non-native)
plants they use for food and nest material sources, their co-evolution,
and how pollination in a park and restored habitat setting is
facilitated by native bees.

Fri, Sept 21, 8pm
Music Gallery, 918 Bathurst (their new location) –
Trio Wow & Flutter
with Bea Labikova, fujara, saxophones,
Kayla Milmine-Abbott, soprano saxophone,
Sarah Peebles, shō, cracklebox, amplifiers.

Call for Participants: Art+Tech Jam

ChangeUp’s Art+Tech Jam
September 21-23

This three days event will unite a diverse group of artists and
technologists in an intensive, collaborative three-day creation period
and culminating showcase (public exhibition and interdisciplinary rave).

ChangeUo is currently accepting applicants from tech and arts/culture
spaces of all ages, backgrounds, and experience levels.
Limited spots available.
For more information and to apply
https://tinyurl.com/changeup-artsorg

I looked up Nanotopia and found it on SoundCloud. Happy listening!

Et Al III (the ultimate science bar night in Vancouver) and more

A September 12, 2018 Curiosity Collider announcement (received via email) reveals details about the latest cooperative event/bar night put on by three sciencish groups,

Curiosity Collider is bringing art + science to Vancouver’s Ultimate Bar Science Night with Nerd Nite & Science Slam

Do you enjoy learning about science in a casual environment? This is the third year that Curiosity Collider is part of Et al, the Ultimate Bar Science Night where we bring together awesome speakers and activities. Come and enjoy Curiosity Collider’s segment on quantum physics with Spoken Word Poet Angelica Poversky, Physicist James Day, and CC’s own Creative Director Char Hoyt.

When: Drinks and mingling start at 6:30pm. Presentations start at 7:30pm.
Where: Rio Theatre, 1660 E Broadway, Vancouver, BC V5N 1W1
Cost: $15-20 via Eventbrite and at the door. Proceeds will be used to cover the cost of running this event, and to fund future science bar events.

Special Guest talk by Dr. Carin Bondar – Biologist with a Twist!

Dr. Carin Bondar is a biologist, author and philosopher. Bondar is author of the books Wild Sex and Wild Moms (Pegasus). She is the writer and host of an online series based on her books which have garnered over 100,000,000 views. Her TED talk on the subject has nearly 3 million views. She is host of several TV series including Worlds Oddest Animal Couples (Animal Planet, Netflix), Stephen Hawking’s Brave New World (Discovery World HD, National Geographic) and Outrageous Acts of Science (The Science Channel). Bondar is an adventurer and explorer, having discovered 11 new species of beetles and snails in the remote jungles of Borneo. Bondar is also a mom of 4 kids, two boys and two girls.

Follow updates on twitter via @ccollider or #ColliderCafe. This event is part of the Science Literacy Week celebration across Canada.

Head to the Facebook event page – let us know you are coming and share this event with others!

Looking for more Art+Science in Vancouver?
For more Vancouver art+science events, visit the Curiosity Collider events calendar.

Devoted readers 🙂 will note that the Vancouver Biennale’s Curious Imaginings show was featured here in a June 18, 2018 post and mentioned more recently in the context of a September 11, 2018 post on xenotransplantation.

Finally for this section, special mention to whomever wrote up the ‘bar night’ description on Eventbrite,

Et Al III: The Ultimate Bar Science Night Curiosity Collider + Nerd Nite Vancouver + Science Slam Canada

POSTER BY: Armin Mortazavi IG:@Armin.Scientoonist

Et Al III: The Ultimate Bar Science Night

Curiosity Collider + Nerd Nite Vancouver + Science Slam Canada

Special Guest talk by Dr. Carin Bondar – Biologist with a Twist!

6:30pm – Doors open
6:30-7:30 Drinks, Socializing, Nerding
7:30pm-945pm Stage Show with two intermissions

You like science? You like drinking while sciencing? In Vancouver there are many options to get educated and inspired through science, art, and culture in a casual bar setting outside of universities. There’s Nerd Nite which focuses on nerdy lectures in the Fox Cabaret, Curiosity Collider which creates events that bring together artists and scientists, and Science Slam, a poetry-slam inspired science communication competition!

In this third installment of Et Al, we’re making the show bigger than ever. We want people to know all about the bar science nights in Vancouver, but we also want to connect all you nerds together as we build this community. We encourage you to COME DRESSED AS YOUR FAVOURITE SCIENTIST. We will give away prizes to the best costumes, plus it’s a great ice breaker. We’re also encouraging science based organizations to get involved in the show by promoting your institution. Contact Kaylee or Michael at vancouver@nerdnite.com if your science organization would like to contribute to the show with some giveaways, you will get a free ticket, if you don’t have anything to give away, contact us anyway, we want this to be a celebration of science nights in Vancouver!

BIOS

CARIN BONDAR
Dr. Carin Bondar is a biologist, author and philosopher. Bondar is author of the books Wild Sex and Wild Moms (Pegasus). She is writer and host of online series based on her books (Wild Sex and Wild Moms) which have garnered over 100,000,000 views. Her TED talk on the subject has nearly 3 million views. She is host of several TV series including Worlds Oddest Animal Couples (Animal Planet, Netflix), Stephen Hawking’s Brave New World (Discovery World HD, National Geographic) and Outrageous Acts of Science (The Science Channel). Bondar is an adventurer and explorer, having discovered 11 new species of beetles and snails in the remote jungles of Borneo. Bondar is also a mom of 4 kids, two boys and two girls.

Curiosity Collider Art Science Foundation promotes interdisciplinary collaborations that capture natural human curiosity. At the intersection of art, culture, technology, and humanity are innovative ways to communicate the daily relevance of science. Though exhibitions, performance events and our quarterly speaker event, the Collider Cafe we help create new ways to experience science.

NERD NITE
In our opinion, there has never been a better time to be a Nerd! Nerd Nite is an event which is currently held in over 60 cities worldwide! The formula for each Nerd Nite is pretty standard – 20 minute presentations from three presenters each night, in a laid-back environment with lots to learn, and lots to drink!

SCIENCE SLAM
Science Slam YVR is a community outreach organization committed to supporting and promoting science communication in Vancouver. Our Science Slams are informal competitions that bring together researchers, students, educators, and communicators to share interesting science in creative ways. Every event is different, with talks, poems, songs, dances, and unexpected surprises. Our only two rules? Each slammer has 5 minutes, and no slideshows are allowed! Slammers come to share their science, and the judges and audience decide their fate. Who will take away the title of Science Slam champion?

That’s a pretty lively description. You can get tickets here.

Calgary’s Beakerhead

An art, science, and engineering festival in Calgary, Alberta, Beakerhead opens on September 19, 2018 and runs until September 23, 2018. Here’s more from the 2018 online programme announcement made in late July (?) 2018,

Giant Dung Beetle, Zorb Ball Racers, Heart Powered Art and More Set to Explode on Calgary Streets!

Quirky, fun adventures result when art, science and engineering collide at Beakerhead September 19 – 23, 2018.

In just seven weeks, enormous electric bolts will light up the sky in downtown Calgary when a crazy cacophony of exhibits and events takes over the city. The Beakerhead crew is announcing the official program lineup with tickets now available online for all ticketed events. This year’s extravaganza will include remarkable spectacles of art and science, unique activities, and more than 50 distinct events – many of which are free, but still require registration to get tickets.

The Calgary-born smash up of art, science and engineering is in its sixth year. Last year, more than 145,000 people participated in Beakerhead and organizers are planning to top that number in 2018.

“Expect conversations that start with “wow!” says Mary Anne Moser, President and Co-founder of Beakerhead. “This year’s lineup includes a lot of original concepts, special culinary events, dozens of workshops, shows and and tours.”

Beakerhead events take place indoors and out. Beakernight is science’s biggest ticketed street party and tickets are now on sale.

Highlights of Beakerhead 2018:

  • Light up the Night: Giant electric bolts will light up the night sky thanks to two 10-metre Tesla Coils built by a team of artists and engineers.
  • Lunch Without Light: This special Dark Table dining experience is led by a famous broadcaster and an esteemed neuroscientist.
  • Beakereats and Beakerbar: Dining is a whole new experience when chef and bartender become scientist! Creative Calgary chefs and mixologists experiment with a new theme in 2018: canola.
  • Four to Six on Fourth: Blocks of open-air experimentation including a human-sized hamster wheel, artists, performers, and hands-on or feet-on experiences like walking on liquid.
  • Beacons: This series of free neighbourhood installations is completely wild! There’s everything from a giant dung beetle to a 3.5 metre lotus that lights up with your heart beat.
  • Workshops: Learn the art of animation, understand cryptocurrency, meet famous scientists and broadcasters, make organic facial oil or a vegan carrot cake and much more.
  • Zorbathon: Get inside a zorb and cavort with family and friends in an oversized playground. Participate in rolling races, bump-a-thons, obstacle courses. Make a day of it.

Beakerhead takes place September 19 – 23, 2018 with the ticketed Beakernight on Saturday, September 22 at Fort Calgary.

Here’s a special shout out to Shaskatchewan`s Jean-Sébastien Gauthier and Brian F. Eames (featured here in a February 16, 2018 posting) and their free ‘Within Measure’ Sept. 19 – 23, 2018 event at Beakerhead.

That’s all folks! For now, that is.

Artists classified the animal kingdom?

Where taxonomy and biology are concerned, my knowledge begins and end with Carl Linnaeus, the Swedish scientist who ushered in modern taxonomy. It was with some surprise that I find out artists also helped develop the field. From a June 21, 2016 news item on ScienceDaily,

In the sixteenth and seventeenth centuries artists were fascinated by how the animal kingdom was classified. They were in some instances ahead of natural historians.

This is one of the findings of art historian Marrigje Rikken. She will defend her PhD on 23 June [2016] on animal images in visual art. In recent years she has studied how images of animals between 1550 and 1630 became an art genre in themselves. ‘The close relationship between science and art at that time was remarkable,’ Rikken comments. ‘Artists tried to bring some order to the animal kingdom, just as biologists did.’

A June 21, 2016 Universiteit Leiden (Leiden University, Netherlands) press release, which originated the news item, expands on the theme,

In some cases the artists were ahead of their times. They became interested in insects, for example, before they attracted the attention of natural historians. It was artist Joris Hoefnagel who in 1575 made the first miniatures featuring beetles, butterflies and dragonflies, indicating how they were related to one another. In his four albums Hoefnagel divided the animal species according to the elements of fire, water, air and earth, but within these classifications he grouped animals on the basis of shared characteristics.

Courtesy: Universiteit Leiden

Beetles, butterflies, and dragonflies by Joris Hoefnagel. Courtesy: Universiteit Leiden

The press release goes on,

Other illustrators, print-makers and painters tried to bring some cohesion to the animal kingdom.  Some of them used an alphabetical system but artist Marcus Gheeraerts  published a print as early as 1583 [visible below, Ed.] in which grouped even-toed ungulates together. The giraffe and sheep – both visible on Gheeraerts’ print – belong to this species of animals. This doesn’t apply to all Gheeraerts’ animals. The mythical unicorn, which was featured by Gheeraerts, no longer appears in contemporary biology books.

Wealthy courtiers

According to Rikken, the so-called menageries played an important role historically in how animals were represented. These forerunners of today’s zoos were popular in the sixteenth and seventeenth centuries particularly among wealthy rulers and courtiers. Unfamiliar exotic animals regularly arrived that were immediately committed to paper by artists. Rikken: ‘The toucan, for example, was immortalised in 1615 by Jan Brueghel the Elder, court painter in Brussels.’  [See the main image, Ed.].’

In the flesh

Rikken also discovered that the number of animals featured in a work gradually increased. ‘Artists from the 1570s generally included one or just a few animals per work. With the arrival of print series a decade later, each illustration tended to include more and more animals. This trend reached its peak in the lavish paintings produced around 1600.’ These paintings are also much more varied than the drawings and prints. Illustrators and print-makers often blindly copied one another’s motifs, even showing the animals in an identical pose. Artists had no hesitation in including the same animal in different positions. Rikken: ‘This allowed them to show that they had observed the animal in the flesh.’

Even-toed ungulates by Marcus Gheeraerts. Courtesy: Leiden Universiteit

Even-toed ungulates by Marcus Gheeraerts. Courtesy: Leiden Universiteit

Yet more proof or, at least, a very strong suggestion that art and science are tightly linked.

Accessing data the Marvel (comic book) way: uberframeworks and graphs

For want of a better term I’m going to be calling the company, Marvel. It is an entertainment conglomerate based in the world of comic books and comic book heroes and the company has a data problem as David Lumb points out in his Nov. 27, 2013 article for Fast Company (Note: A link has been removed),

After 70 years of publishing, Marvel Entertainment has built up an incredible universe of heroes, villains, and super teams–a sea of data that no mere wiki can organize. At long last, Marvel has embarked on a mighty quest of its own: to create an entirely new graph database and search system to conquer continuity malaise by visualizing each character across the Marvel Universe.

Here’s how Lumb describes the problem,

The problem, like with any massive chunk of data, lies in getting the right data pieces in front of users–but for Marvel, the question becomes a semantic exercise. Just who is the character Hawkeye?

Well, he’s Clint Barton, except when he’s not; erstwhile sidekick Kate Bishop and villain Bullseye have taken the Hawkeye identity. He’s a member of the Avengers, except when he’s not; he’s also been part of the Thunderbolts and West Coast Avengers. He got his skills performing trick shots in a circus, except when he didn’t: He got them as an agent redeeming a murder conviction in the Ultimate universe and as a Black Ops SHIELD agent in the Marvel films.

According to the article, Peter Olson, Marvel’s VP of Web and Application Development, is in charge of developing the new database (Note: A link has been removed),

“We want an uberframework–the words ‘ontology’ and ‘taxonomy’ get thrown around a lot,” Olson said. “We want characters to appear as close to as possible from all their stories and iterations but, overall, we want the characters to bubble up to archetypes.”

Most databases are relational, most easily visualized as tables of rows and columns: … Marvel still has use for this kind of database that returns queries with solid, irrefutable answers, like listing all the issues they’ve sold for the above prices.

The new database, however, will run on graph theory, looking for relationships between characters, teams, and events. The graph above [image removed] displays relationships between characters, which would be extremely difficult for a relational database that might look for superheroes but leave out villains instead of showing more abstract values, like how popular/visible a character is across Marvel’s comic titles.

There is of course a business case for this new approach (Note: Links have been removed from the article excerpt),

… The Marvel graph database will find an answer based not only on book similarities but nuanced metadata, like writer or artist style. Better still, it’ll do what the venerable ComicBookDatabase cannot: confidently propose a list of essential story arcs for the new fan.
And lo, Marvel’s multimedia empire strikes again: Aside from Sony’s death grip on Spider-Man, Marvel holds the rights to all its major characters, so their recommendations aren’t limited to subscriber-only comics on its Marvel Unlimited service. Let loose the hounds of suggested merchandise! Of course, this also means those ultra-streamlined character pages will become the most seamless portals to every character’s stories that the Internet has ever seen.

This is a good article, which I recommend reading in its entirety, although I do have one suggestion for David Lumb and/or his editor,

… the company now depicts the same characters across multiple mediums … [emphasis mine]

The plural in this context (mass communications) should have been media. Mediums are a group of people who communicate with the dead, as one of my professors informed us all in an undergraduate communications course. He was a bit of hardliner on the topic,. I found out later there is a group that uses both; artists use either media or mediums (Grammarist).

Graph Databases, are covered in a Wikipedia essay, which has this to say about them (Note: Links and footnotes have been removed),

A graph database is a database that uses graph structures with nodes, edges, and properties to represent and store data. By definition,[according to whom?] a graph database is any storage system that provides index-free adjacency. This means that every element contains a direct pointer to its adjacent element and no index lookups are necessary.

The essay also offers this illustration,

[Downloaded from: https://en.wikipedia.org/wiki/Graph_database]

[Downloaded from: https://en.wikipedia.org/wiki/Graph_database]

Peter Olson, the VP who’s managing this new database for Marvel gave a talk at the Nov. 5 – 6, 2013 GraphConnect New York (City) meeting. His talk is described this way on the website (from the GraphConnect 2013 videos webpage),

Graphing the Marvel Universe – Peter Olson @GraphConnect NY 2013

This talk will give an overview of why graphs are such a powerful conceptual framework for modeling intellectual property and how Marvel uses them to represent the 70 years of fictional content from many different media that makes up the Marvel Universe.

The talk is approximately 40 mins. long and you can also find it here on Vimeo.

You can find more information (speakers, agenda, etc.) here about the Nov. 5 – 6, 2013 meeting in New York City and you can find out more about GraphConnect 2013 meetings in Boston, San Francisco, London (UK), and elsewhere by going here.