Monthly Archives: June 2020

Of sleep, electric sheep, and thousands of artificial synapses on a chip

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A close-up view of a new neuromorphic “brain-on-a-chip” that includes tens of thousands of memristors, or memory transistors. Credit: Peng Lin Courtesy: MIT

It’s hard to believe that a brain-on-a-chip might need sleep but that seems to be the case as far as the US Dept. of Energy’s Los Alamos National Laboratory is concerned. Before pursuing that line of thought, here’s some work from the Massachusetts Institute of Technology (MIT) involving memristors and a brain-on-a-chip. From a June 8, 2020 news item on ScienceDaily,

MIT engineers have designed a “brain-on-a-chip,” smaller than a piece of confetti, that is made from tens of thousands of artificial brain synapses known as memristors — silicon-based components that mimic the information-transmitting synapses in the human brain.

The researchers borrowed from principles of metallurgy to fabricate each memristor from alloys of silver and copper, along with silicon. When they ran the chip through several visual tasks, the chip was able to “remember” stored images and reproduce them many times over, in versions that were crisper and cleaner compared with existing memristor designs made with unalloyed elements.

Their results, published today in the journal Nature Nanotechnology, demonstrate a promising new memristor design for neuromorphic devices — electronics that are based on a new type of circuit that processes information in a way that mimics the brain’s neural architecture. Such brain-inspired circuits could be built into small, portable devices, and would carry out complex computational tasks that only today’s supercomputers can handle.

…

This ‘metallurgical’ approach differs somewhat from the protein nanowire approach used by the University of Massachusetts at Amherst team mentioned in my June 15, 2020 posting. Scientists are pursuing multiple pathways and we may find that we arrive with not ‘a single artificial brain but with many types of artificial brains.

A June 8, 2020 MIT news release (also on EurekAlert) provides more detail about this brain-on-a-chip,

“So far, artificial synapse networks exist as software. We’re trying to build real neural network hardware for portable artificial intelligence systems,” says Jeehwan Kim, associate professor of mechanical engineering at MIT. “Imagine connecting a neuromorphic device to a camera on your car, and having it recognize lights and objects and make a decision immediately, without having to connect to the internet. We hope to use energy-efficient memristors to do those tasks on-site, in real-time.”

Wandering ions

Memristors, or memory transistors [Note: Memristors are usually described as memory resistors; this is the first time I’ve seen ‘memory transistor’], are an essential element in neuromorphic computing. In a neuromorphic device, a memristor would serve as the transistor in a circuit, though its workings would more closely resemble a brain synapse — the junction between two neurons. The synapse receives signals from one neuron, in the form of ions, and sends a corresponding signal to the next neuron.

A transistor in a conventional circuit transmits information by switching between one of only two values, 0 and 1, and doing so only when the signal it receives, in the form of an electric current, is of a particular strength. In contrast, a memristor would work along a gradient, much like a synapse in the brain. The signal it produces would vary depending on the strength of the signal that it receives. This would enable a single memristor to have many values, and therefore carry out a far wider range of operations than binary transistors.

Like a brain synapse, a memristor would also be able to “remember” the value associated with a given current strength, and produce the exact same signal the next time it receives a similar current. This could ensure that the answer to a complex equation, or the visual classification of an object, is reliable — a feat that normally involves multiple transistors and capacitors.

Ultimately, scientists envision that memristors would require far less chip real estate than conventional transistors, enabling powerful, portable computing devices that do not rely on supercomputers, or even connections to the Internet.

Existing memristor designs, however, are limited in their performance. A single memristor is made of a positive and negative electrode, separated by a “switching medium,” or space between the electrodes. When a voltage is applied to one electrode, ions from that electrode flow through the medium, forming a “conduction channel” to the other electrode. The received ions make up the electrical signal that the memristor transmits through the circuit. The size of the ion channel (and the signal that the memristor ultimately produces) should be proportional to the strength of the stimulating voltage.

Kim says that existing memristor designs work pretty well in cases where voltage stimulates a large conduction channel, or a heavy flow of ions from one electrode to the other. But these designs are less reliable when memristors need to generate subtler signals, via thinner conduction channels.

The thinner a conduction channel, and the lighter the flow of ions from one electrode to the other, the harder it is for individual ions to stay together. Instead, they tend to wander from the group, disbanding within the medium. As a result, it’s difficult for the receiving electrode to reliably capture the same number of ions, and therefore transmit the same signal, when stimulated with a certain low range of current.

Borrowing from metallurgy

Kim and his colleagues found a way around this limitation by borrowing a technique from metallurgy, the science of melding metals into alloys and studying their combined properties.

“Traditionally, metallurgists try to add different atoms into a bulk matrix to strengthen materials, and we thought, why not tweak the atomic interactions in our memristor, and add some alloying element to control the movement of ions in our medium,” Kim says.

Engineers typically use silver as the material for a memristor’s positive electrode. Kim’s team looked through the literature to find an element that they could combine with silver to effectively hold silver ions together, while allowing them to flow quickly through to the other electrode.

The team landed on copper as the ideal alloying element, as it is able to bind both with silver, and with silicon.

“It acts as a sort of bridge, and stabilizes the silver-silicon interface,” Kim says.

To make memristors using their new alloy, the group first fabricated a negative electrode out of silicon, then made a positive electrode by depositing a slight amount of copper, followed by a layer of silver. They sandwiched the two electrodes around an amorphous silicon medium. In this way, they patterned a millimeter-square silicon chip with tens of thousands of memristors.

As a first test of the chip, they recreated a gray-scale image of the Captain America shield. They equated each pixel in the image to a corresponding memristor in the chip. They then modulated the conductance of each memristor that was relative in strength to the color in the corresponding pixel.

The chip produced the same crisp image of the shield, and was able to “remember” the image and reproduce it many times, compared with chips made of other materials.

The team also ran the chip through an image processing task, programming the memristors to alter an image, in this case of MIT’s Killian Court, in several specific ways, including sharpening and blurring the original image. Again, their design produced the reprogrammed images more reliably than existing memristor designs.

“We’re using artificial synapses to do real inference tests,” Kim says. “We would like to develop this technology further to have larger-scale arrays to do image recognition tasks. And some day, you might be able to carry around artificial brains to do these kinds of tasks, without connecting to supercomputers, the internet, or the cloud.”

Here’s a link to and a citation for the paper,

Alloying conducting channels for reliable neuromorphic computing by Hanwool Yeon, Peng Lin, Chanyeol Choi, Scott H. Tan, Yongmo Park, Doyoon Lee, Jaeyong Lee, Feng Xu, Bin Gao, Huaqiang Wu, He Qian, Yifan Nie, Seyoung Kim & Jeehwan Kim. Nature Nanotechnology (2020 DOI: https://doi.org/10.1038/s41565-020-0694-5 Published: 08 June 2020

This paper is behind a paywall.

Electric sheep and sleeping androids

I find it impossible to mention that androids might need sleep without reference to Philip K. Dick’s 1968 novel, “Do Androids Dream of Electric Sheep?”; its Wikipedia entry is here.

June 8, 2020 Intelligent machines of the future may need to sleep as much as we do. Intelligent machines of the future may need to sleep as much as we do. Courtesy: Los Alamos National Laboratory

As it happens, I’m not the only one who felt the need to reference the novel, from a June 8, 2020 news item on ScienceDaily,

No one can say whether androids will dream of electric sheep, but they will almost certainly need periods of rest that offer benefits similar to those that sleep provides to living brains, according to new research from Los Alamos National Laboratory.

“We study spiking neural networks, which are systems that learn much as living brains do,” said Los Alamos National Laboratory computer scientist Yijing Watkins. “We were fascinated by the prospect of training a neuromorphic processor in a manner analogous to how humans and other biological systems learn from their environment during childhood development.”

Watkins and her research team found that the network simulations became unstable after continuous periods of unsupervised learning. When they exposed the networks to states that are analogous to the waves that living brains experience during sleep, stability was restored. “It was as though we were giving the neural networks the equivalent of a good night’s rest,” said Watkins.

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A June 8, 2020 Los Alamos National Laboratory (LANL) news release (also on EurekAlert), which originated the news item, describes the research team’s presentation,

The discovery came about as the research team worked to develop neural networks that closely approximate how humans and other biological systems learn to see. The group initially struggled with stabilizing simulated neural networks undergoing unsupervised dictionary training, which involves classifying objects without having prior examples to compare them to.

“The issue of how to keep learning systems from becoming unstable really only arises when attempting to utilize biologically realistic, spiking neuromorphic processors or when trying to understand biology itself,” said Los Alamos computer scientist and study coauthor Garrett Kenyon. “The vast majority of machine learning, deep learning, and AI researchers never encounter this issue because in the very artificial systems they study they have the luxury of performing global mathematical operations that have the effect of regulating the overall dynamical gain of the system.”

The researchers characterize the decision to expose the networks to an artificial analog of sleep as nearly a last ditch effort to stabilize them. They experimented with various types of noise, roughly comparable to the static you might encounter between stations while tuning a radio. The best results came when they used waves of so-called Gaussian noise, which includes a wide range of frequencies and amplitudes. They hypothesize that the noise mimics the input received by biological neurons during slow-wave sleep. The results suggest that slow-wave sleep may act, in part, to ensure that cortical neurons maintain their stability and do not hallucinate.

The groups’ next goal is to implement their algorithm on Intel’s Loihi neuromorphic chip. They hope allowing Loihi to sleep from time to time will enable it to stably process information from a silicon retina camera in real time. If the findings confirm the need for sleep in artificial brains, we can probably expect the same to be true of androids and other intelligent machines that may come about in the future.

Watkins will be presenting the research at the Women in Computer Vision Workshop on June 14 [2020] in Seattle.

The 2020 Women in Computer Vition Workshop (WICV) website is here. As is becoming standard practice for these times, the workshop was held in a virtual environment. Here’s a link to and a citation for the poster presentation paper,

Using Sinusoidally-Modulated Noise as a Surrogate for Slow-Wave Sleep to
Accomplish Stable Unsupervised Dictionary Learning in a Spike-Based Sparse Coding Model by Yijing Watkins, Edward Kim, Andrew Sornborger and Garrett T. Kenyon. Women in Computer Vision Workshop on June 14, 2020 in Seattle, Washington (state)

This paper is open access for now.

Neuromorphic computing with voltage usage comparable to human brains

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Part of neuromorphic computing’s appeal is the promise of using less energy because, as it turns out, the human brain uses small amounts of energy very efficiently. A team of researchers at the University of Massachusetts at Amherst have developed function in the same range of voltages as the human brain. From an April 20, 2020 news item on ScienceDaily,

Only 10 years ago, scientists working on what they hoped would open a new frontier of neuromorphic computing could only dream of a device using miniature tools called memristors that would function/operate like real brain synapses.

But now a team at the University of Massachusetts Amherst has discovered, while on their way to better understanding protein nanowires, how to use these biological, electricity conducting filaments to make a neuromorphic memristor, or “memory transistor,” device. It runs extremely efficiently on very low power, as brains do, to carry signals between neurons. Details are in Nature Communications.

An April 20, 2020 University of Massachusetts at Amherst news release (also on EurekAlert), which originated the news items, dives into detail about how these researchers were able to achieve bio-voltages,

As first author Tianda Fu, a Ph.D. candidate in electrical and computer engineering, explains, one of the biggest hurdles to neuromorphic computing, and one that made it seem unreachable, is that most conventional computers operate at over 1 volt, while the brain sends signals called action potentials between neurons at around 80 millivolts – many times lower. Today, a decade after early experiments, memristor voltage has been achieved in the range similar to conventional computer, but getting below that seemed improbable, he adds.

Fu reports that using protein nanowires developed at UMass Amherst from the bacterium Geobacter by microbiologist and co-author Derek Lovely, he has now conducted experiments where memristors have reached neurological voltages. Those tests were carried out in the lab of electrical and computer engineering researcher and co-author Jun Yao.

Yao says, “This is the first time that a device can function at the same voltage level as the brain. People probably didn’t even dare to hope that we could create a device that is as power-efficient as the biological counterparts in a brain, but now we have realistic evidence of ultra-low power computing capabilities. It’s a concept breakthrough and we think it’s going to cause a lot of exploration in electronics that work in the biological voltage regime.”

Lovely points out that Geobacter’s electrically conductive protein nanowires offer many advantages over expensive silicon nanowires, which require toxic chemicals and high-energy processes to produce. Protein nanowires also are more stable in water or bodily fluids, an important feature for biomedical applications. For this work, the researchers shear nanowires off the bacteria so only the conductive protein is used, he adds.

Fu says that he and Yao had set out to put the purified nanowires through their paces, to see what they are capable of at different voltages, for example. They experimented with a pulsing on-off pattern of positive-negative charge sent through a tiny metal thread in a memristor, which creates an electrical switch.

They used a metal thread because protein nanowires facilitate metal reduction, changing metal ion reactivity and electron transfer properties. Lovely says this microbial ability is not surprising, because wild bacterial nanowires breathe and chemically reduce metals to get their energy the way we breathe oxygen.

As the on-off pulses create changes in the metal filaments, new branching and connections are created in the tiny device, which is 100 times smaller than the diameter of a human hair, Yao explains. It creates an effect similar to learning – new connections – in a real brain. He adds, “You can modulate the conductivity, or the plasticity of the nanowire-memristor synapse so it can emulate biological components for brain-inspired computing. Compared to a conventional computer, this device has a learning capability that is not software-based.”

Fu recalls, “In the first experiments we did, the nanowire performance was not satisfying, but it was enough for us to keep going.” Over two years, he saw improvement until one fateful day when his and Yao’s eyes were riveted by voltage measurements appearing on a computer screen.

“I remember the day we saw this great performance. We watched the computer as current voltage sweep was being measured. It kept doing down and down and we said to each other, ‘Wow, it’s working.’ It was very surprising and very encouraging.”

Fu, Yao, Lovely and colleagues plan to follow up this discovery with more research on mechanisms, and to “fully explore the chemistry, biology and electronics” of protein nanowires in memristors, Fu says, plus possible applications, which might include a device to monitor heart rate, for example. Yao adds, “This offers hope in the feasibility that one day this device can talk to actual neurons in biological systems.”

That last comment has me wondering about why you would want to have your device talk to actual neurons. For neuroprosthetics perhaps?

Here’s a link to and a citation for the paper,

Bioinspired bio-voltage memristors by Tianda Fu, Xiaomeng Liu, Hongyan Gao, Joy E. Ward, Xiaorong Liu, Bing Yin, Zhongrui Wang, Ye Zhuo, David J. F. Walker, J. Joshua Yang, Jianhan Chen, Derek R. Lovley & Jun Yao. Nature Communications volume 11, Article number: 1861 (2020) DOI: https://doi.org/10.1038/s41467-020-15759-y Published: 20 April 2020

This paper is open access.

There is an illustration of the work

Caption: A graphic depiction of protein nanowires (green) harvested from microbe Geobacter (orange) facilitate the electronic memristor device (silver) to function with biological voltages, emulating the neuronal components (blue junctions) in a brain. Credit: UMass Amherst/Yao lab

Gold nanoparticles could help detect the presence of COVID-19 in ten minutes

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If this works out, it would make testing for COVID-19 an infinitely easier task. From a May 29, 2020 news item on phys.org,

Scientists from the University of Maryland School of Medicine (UMSOM) developed an experimental diagnostic test for COVID-19 that can visually detect the presence of the virus in 10 minutes. It uses a simple assay containing plasmonic gold nanoparticles to detect a color change when the virus is present. The test does not require the use of any advanced laboratory techniques, such as those commonly used to amplify DNA, for analysis. The authors published their work last week [May 21, 2020] in the American Chemical Society’s nanotechnology journal ACS Nano.

“Based on our preliminary results, we believe this promising new test may detect RNA [ribonucleic acid] material from the virus as early as the first day of infection. Additional studies are needed, however, to confirm whether this is indeed the case,” said study leader Dipanjan Pan, PhD, Professor of Diagnostic Radiology and Nuclear Medicine and Pediatrics at the UMSOM.

Caption: A nasal swab containing a test sample is mixed with a simple lab test. It contains a liquid mixed with gold nanoparticles attached to a molecule that binds to the novel coronavirus. If the virus is present, the gold nanoparticles turns the solution a deep blue color (bottom of the tube) and a precipitation is noticed. If it is not present, the solution retains its original purple color. Credit: University of Maryland School of Medicine

A May 28, 2020 University of Maryland news release (also on EurekAlert), which originated the news item, provides more detail,

Once a nasal swab or saliva sample is obtained from a patient, the RNA is extracted from the sample via a simple process that takes about 10 minutes. The test uses a highly specific molecule attached to the gold nanoparticles to detect a particular protein. This protein is part of the genetic sequence that is unique to the novel coronavirus. When the biosensor binds to the virus’s gene sequence, the gold nanoparticles respond by turning the liquid reagent from purple to blue.

“The accuracy of any COVID-19 test is based on being able to reliably detect any virus. This means it does not give a false negative result if the virus actually is present, nor a false positive result if the virus is not present,” said Dr. Pan. “Many of the diagnostic tests currently on the market cannot detect the virus until several days after infection. For this reason, they have a significant rate of false negative results.”

Dr. Pan created a company called VitruVian Bio to develop the test for commercial application. He plans to have a pre-submission meeting with the U.S. Food and Drug Administration (FDA) within the next month to discuss requirements for getting an emergency use authorization for the test. New FDA policy allows for the marketing of COVID-19 tests without requiring them to go through the usual approval or clearance process. These tests do, however, need to meet certain validation testing requirements to ensure that they provide reliable results.

“This RNA-based test appears to be very promising in terms of detecting the virus. The innovative approach provides results without the need for a sophisticated laboratory facility,” said study co-author Matthew Frieman, PhD, Associate Professor of Microbiology and Immunology at UMSOM.

Although more clinical studies are warranted, this test could be far less expensive to produce and process than a standard COVID-19 lab test; it does not require laboratory equipment or trained personnel to run the test and analyze the results. If this new test meets FDA expectations, it could potentially be used in daycare centers, nursing homes, college campuses, and work places as a surveillance technique to monitor any resurgence of infections.

In Dr. Pan’s laboratory, research scientist Parikshit Moitra, PhD, and UMSOM research fellow Maha Alafeef conducted the studies along with research fellow Ketan Dighe from UMBC.

Dr. Pan holds a joint appointment with the College of Engineering at the University of Maryland Baltimore County and is also a faculty member of the Center for Blood Oxygen Transport and Hemostasis (CBOTH).

“This is another example of how our faculty is driving innovation to fulfill a vital need to expand the capacity of COVID-19 testing,” said Dean E. Albert Reece, MD, PhD, MBA, who is also Executive Vice President for Medical Affairs, UM Baltimore, and the John Z. and Akiko K. Bowers Distinguished Professor, University of Maryland School of Medicine. “Our nation will be relying on inexpensive, rapid tests that can be dispersed widely and used often until we have effective vaccines against this pandemic.”

Here’s a link to and a citation for the paper,

Selective Naked-Eye Detection of SARS-CoV-2 Mediated by N Gene Targeted Antisense Oligonucleotide Capped Plasmonic Nanoparticles by Parikshit Moitra, Maha Alafeef, Ketan Dighe, Matthew B. Frieman, and Dipanjan Pan. ACS Nano 2020, XXXX, XXX, XXX-XXX DOI: https://doi.org/10.1021/acsnano.0c03822 Publication Date:May 21, 2020 Copyright © 2020 American Chemical Society

This paper appears to be open access.

I tried to find Dr. Pan’s company, VitruVian Bio and found a business with an almost identical name, Vitruvian Biomedical, which does not include Dr. Pan on its management team list and this company’s focus is on Alzheimer’s Disease. Finally, there is no mention of the COVID-19 test anywhere on the Vitruvian Biomedical website.

New US regulations exempt many gene-edited crops from government oversight

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A June 1, 2020 essay by Maywa Montenegro (Postdoctoral Fellow, University of California at Davis) for The Conversation posits that new regulations (which in fact result in deregulation) are likely to create problems,

In May [2020], federal regulators finalized a new biotechnology policy that will bring sweeping changes to the U.S. food system. Dubbed “SECURE,” the rule revises U.S. Department of Agriculture regulations over genetically engineered plants, automatically exempting many gene-edited crops from government oversight. Companies and labs will be allowed to “self-determine” whether or not a crop should undergo regulatory review or environmental risk assessment.

Initial responses to this new policy have followed familiar fault lines in the food community. Seed industry trade groups and biotech firms hailed the rule as “important to support continuing innovation.” Environmental and small farmer NGOs called the USDA’s decision “shameful” and less attentive to public well-being than to agribusiness’s bottom line.

But the gene-editing tool CRISPR was supposed to break the impasse in old GM wars by making biotechnology more widely affordable, accessible and thus democratic.

In my research, I study how biotechnology affects transitions to sustainable food systems. It’s clear that since 2012 the swelling R&D pipeline of gene-edited grains, fruits and vegetables, fish and livestock has forced U.S. agencies to respond to the so-called CRISPR revolution.

Yet this rule change has a number of people in the food and scientific communities concerned. To me, it reflects the lack of accountability and trust between the public and government agencies setting policies.

…

Is there a better way?

… I have developed a set of principles and practices for governing CRISPR based on dialogue with front-line communities who are most affected by the technologies others usher in. Communities don’t just have to adopt or refuse technology – they can co-create [emphasis mine] it.

One way to move forward in the U.S. is to take advantage of common ground between sustainable agriculture movements and CRISPR scientists. The struggle over USDA rules suggests that few outside of industry believe self-regulation is fair, wise or scientific.

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h/t: June 1, 2020 news item on phys.org

If you have the time and the inclination, do read the essay in its entirety.

Anyone who has read my COVID-19 op-ed for the Canadian Science Policy may see some similarity between Montenegro’s “co-create” and this from my May 15, 2020 posting which included my reference materials or this version on the Canadian Science Policy Centre where you can find many other COVID-19 op-eds)

In addition to engaging experts as we navigate our way into the future, we can look to artists, writers, citizen scientists, elders, indigenous communities, rural and urban communities, politicians, philosophers, ethicists, religious leaders, and bureaucrats of all stripes for more insight into the potential for collateral and unintended consequences.

To be clear, I think times of crises are when a lot of people call for more co-creation and input. Here’s more about Montenegro’s work on her profile page (which includes her academic credentials, research interests and publications) on the University of California at Berkeley’s Department of Environmental Science, Policy, and Management webspace. She seems to have been making the call for years.

I am a US-Dutch-Peruvian citizen who grew up in Appalachia, studied molecular biology in the Northeast, worked as a journalist in New York City, and then migrated to the left coast to pursue a PhD. My indigenous ancestry, smallholder family history, and the colonizing/decolonizing experiences of both the Netherlands and Peru informs my personal and professional interests in seeds and agrobiodiversity. My background engenders a strong desire to explore synergies between western science and the indigenous/traditional knowledge systems that have historically been devalued and marginalized.

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Trained in molecular biology, science writing, and now, a range of critical social and ecological theory, I incorporate these perspectives into research on seeds.

I am particularly interested in the relationship between formal seed systems – characterized by professional breeding, certification, intellectual property – and commercial sale and informal seed systems through which farmers traditionally save, exchange, and sell seeds. …

You can find more on her Twitter feed, which is where I discovered a call for papers for a “Special Feature: Gene Editing the Food System” in the journal, Elementa: Science of the Anthropocene. They have a rolling deadline, which started in February 2020. At this time, there is one paper in the series,

Democratizing CRISPR? Stories, practices, and politics of science and governance on the agricultural gene editing frontier by Maywa Montenegro de Wit. Elem Sci Anth, 8(1), p.9. DOI: http://doi.org/10.1525/elementa.405 Published February 25, 2020

The paper is open access. Interestingly, the guest editor is Elizabeth Fitting of Dalhousie University in Nova Scotia, Canada.

Plants as a source of usable electricity

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A friend sent me a link to this interview with Iftach Yacoby of Tel Aviv University talking about some new research into plants and electricity. From a June 8, 2020 article by Omer Kabir for Calcalist (CTech) on the Algemeiner website,

For years, scientists have been trying to understand the evolutionary capabilities of plants to produce energy and have had only partial success. But a recent Tel Aviv University [TAU] study seems to make the impossible possible, proving that any plant can be transformed into an electrical source, producing a variety of materials that can revolutionize the global economy — from using hydrogen as fuel to clean ammonia to replace the pollutants in the agriculture industry.

“People are unaware that their plant pots have an electric current for everything,” Iftach Yacoby, head of the Laboratory of Renewable Energy Studies at Tel Aviv University’s Faculty of Life Sciences said in a recent interview with Calcalist.

“Our study opens the door to a new field of agriculture, equivalent to wheat or corn production for food security — generating energy,” he said. However, Yacoby makes it clear that it will take at least a decade before the research findings can be transferred to the commercial level.

…

At the heart of the research is the understanding that plants have particularly efficient capacities when it comes to electricity generation. “Anything green that is not dollars, but rather leaves, grass, and seaweed for example, contains solar panels that are completely identical to the panels the entire country is now building,” Yacoby explained. “They know how to take in solar radiation and make electrons flow out of it. That’s the essence of photosynthesis. Most people think of oxygen and food production, but the most basic phase of photosynthesis is the same as silicon panels in the Negev and on rooftops — taking in sunlight and generating electric current.”

… “At home, an electric current can be wired to many devices. Just plug the device into a power outlet. But when you want to do it in plants, it’s about the order of nanometers. We have no idea where to plug the plugs. That’s what we did in this study. In plant cells, we found they can be used as a socket for anything, at just a nanometer size. We have an enzyme, which is equivalent to a biological machine that can produce hydrogen. We took this enzyme, put it together so that it sits in the socket in the plant cell, which was previously only hypothetical. When he started to produce hydrogen, we proved that we had a socket for everything, though nanotermically-sized. Now we can take any plant or kelp and engineer it so that their electrical outlet can be used for production purposes,” Yacoby explained.

“If you attach an enzyme that produces hydrogen you get hydrogen, it’s the cleanest fuel that can be,” he said. “There are already electric cars and bicycles with a range of 150 km that travel on hydrogen. There are many types of enzymes in nature that produce valuable substances, such as ammonia needed for the fertilizer industry and today is still produced by a very toxic and harmful method that consumes a lot of energy. We can provide a plant-based alternative for the production of materials that are made in chemical manufacturing facilities. It’s an electric platform inside a living plant cell.”

…

You might find it helpful to read Kabir’s article in its entirety before moving on to the news release about the work. The work was conducted with researchers from Arizona State University (ASU;US) and a researcher from Yogi Vemana University (India), as well as, Yacoby. There’s a May 7, 2020 ASU news release (also on EurekAlert but published on May 6, 2020) detailing the work,

Hydrogen is an essential commodity with over 60 million tons produced globally every year. However over 95 percent of it is made by steam reformation of fossil fuels, a process that is energy intensive and produces carbon dioxide. If we could replace even a part of that with algal biohydrogen that is made via light and water, it would have a substantial impact.

This is essentially what has just been achieved in the lab of Kevin Redding, professor in the School of Molecular Sciences and director of the Center for Bioenergy and Photosynthesis. Their research, entitled Rewiring photosynthesis: a Photosystem I -hydrogenase chimera that makes hydrogen in vivo was published very recently in the high impact journal Energy and Environmental Science.

“What we have done is to show that it is possible to intercept the high energy electrons from photosynthesis and use them to drive alternate chemistry, in a living cell” explained Redding. “We have used hydrogen production here as an example.”

“Kevin Redding and his group have made a true breakthrough in re-engineering the Photosystem I complex,” explained Ian Gould, interim director of the School of Molecular Sciences, which is part of The College of Liberal Arts and Sciences. “They didn’t just find a way to redirect a complex protein structure that nature designed for one purpose to perform a different, but equally critical process, but they found the best way to do it at the molecular level.”

It is common knowledge that plants and algae, as well as cyanobacteria, use photosynthesis to produce oxygen and “fuels,” the latter being oxidizable substances like carbohydrates and hydrogen. There are two pigment-protein complexes that orchestrate the primary reactions of light in oxygenic photosynthesis: Photosystem I (PSI) and Photosystem II (PSII).

Algae (in this work the single-celled green alga Chlamydomonas reinhardtii, or ‘Chlamy’ for short) possess an enzyme called hydrogenase that uses electrons it gets from the protein ferredoxin, which is normally used to ferry electrons from PSI to various destinations. A problem is that the algal hydrogenase is rapidly and irreversibly inactivated by oxygen that is constantly produced by PSII.

In this study, doctoral student and first author Andrey Kanygin has created a genetic chimera of PSI and the hydrogenase such that they co-assemble and are active in vivo. This new assembly redirects electrons away from carbon dioxide fixation to the production of biohydrogen.

“We thought that some radically different approaches needed to be taken — thus, our crazy idea of hooking up the hydrogenase enzyme directly to Photosystem I in order to divert a large fraction of the electrons from water splitting (by Photosystem II) to make molecular hydrogen,” explained Redding.

Cells expressing the new photosystem (PSI-hydrogenase) make hydrogen at high rates in a light dependent fashion, for several days.

This important result will also be featured in an upcoming article in Chemistry World – a monthly chemistry news magazine published by the Royal Society of Chemistry. The magazine addresses current developments in the world of chemistry including research, international business news and government policy as it affects the chemical science community.

The NSF grant funding this research is part of the U.S.-Israel Binational Science Foundation (BSF). In this arrangement, a U.S. scientist and Israeli scientist join forces to form a joint project. The U.S. partner submits a grant on the joint project to the NSF, and the Israeli partner submits the same grant to the ISF (Israel Science Foundation). Both agencies must agree to fund the project in order to obtain the BSF funding. Professor Iftach Yacoby of Tel Aviv University, Redding’s partner on the BSF project, is a young scientist who first started at TAU about eight years ago and has focused on different ways to increase algal biohydrogen production.

In summary, re-engineering the fundamental processes of photosynthetic microorganisms offers a cheap and renewable platform for creating bio-factories capable of driving difficult electron reactions, powered only by the sun and using water as the electron source.

Here’s a link to and a citation for the paper,

Rewiring photosynthesis: a photosystem I-hydrogenase chimera that makes H2in vivo† by Andrey Kanygin, Yuval Milrad, Chandrasekhar Thummala, Kiera Reifschneider, Patricia Baker, Pini Marco, Iftach Yacoby and Kevin E. Redding. Energy Environ. Sci., 2020, Advance DOI: https://doi.org/10.1039/C9EE03859K First published: 17 Apr 2020

In order to gain access to the paper, you must have or sign up for a free account.

This image was used to illustrate the research,

A model of Photosystem 1 core subunits Courtesy: ASU

Nanoparticles make home refrigeration more accessible

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Periodically, academic institutions recycle news about their research. I think it happens when, for one reason or another, a piece of news (somebody was exciting) slips past with little notice. I’m glad this June 1, 2020 news item on phys.org brought this research from South Africa to my attention,

Power consumption of a home refrigerator can be cut by 29% while improving cooling capacity. Researchers replaced widely used but environmentally unfriendly R134a refrigerant with the more energy-efficient R600a dosed with multi-walled carbon nanotube nanoparticles (MWCNT). This drop-in refrigerant replacement can be deployed in the field by trained technicians, says an engineer from the University of Johannesburg.

…

A May 30, 2020 University of Johannesburg press release on EurekAlert, which originated the news item, provides more details about the research,

This test of nanoparticle-dosed refrigerants is a first of its kind and recently published in Energy Reports, an open-access journal. The results can help make home refrigeration more accessible for low-income families.

R134a is one of the most widely-used refrigerants in domestic and industrial refrigerators. It is safe for many applications because it is not flammable. However, it has high global warming potential, contributing to climate change. It also causes fridges, freezers and air-conditioning equipment to consume a lot of electrical energy. The energy consumption contributes even more to climate change.

Meanwhile, a more energy-efficient refrigerant can result in much lower electricity bills. For vulnerable households, energy security can be improved as a result. Improved energy economy and demand-side management can also benefit planners at power utilities, as cooling accounts for about 40% of energy demand.

Nanoparticles enhance power reduction

Nano eco-friendly refrigerants have been made with water and ethylene glycol. Previous studies showed reduced energy use in nano-refrigeration, where refrigerants were dosed with multi-walled carbon nanotube (MWCNT) nanoparticles. The nanoparticles also resulted in reduced friction and wear on appliance vapour compressors.

But previous research did not test the effects of MWCNT’s on hydro-carbon refrigerants such as R600a.

In a recent study, researchers at the University of Johannesburg tested the drop-in replacement of environmentally-unfriendly refrigerant R134a, in a home refrigerator manufactured to work with 100g R134a.

They replaced R134a with the more energy-efficient refrigerant R600a, dosed with MWCNT nanoparticles.

Reduces electricity use by more than a quarter

The researchers removed the R134a refrigerant and its compressor oil from a household fridge. They used a new refrigerant, R600a, and dosed it with multi-walled carbon nanotubes (MWCNTs). Mineral oil was used as a lubricant. The new mix was fed into the fridge and performance tests were conducted.

They found that the R600a-MWCNT refrigerant resulted in much better performance and cooling capacity for the fridge.

“The fridge cooled faster and had a much lower evaporation temperature of -11 degrees Celsius after 150 minutes. This was lower than the -8 degrees Celsius for R134a. It also exceeded the ISO 8187 standard, which requires -3 degrees Celsius at 180 minutes,” says Dr Daniel Madyira.

Dr Madyira is from the Department of Mechanical Engineering Science at the University of Johannesburg.

“Electricity usage decreased by 29% compared to using R134a. This is a significant energy efficiency gain for refrigerator users, especially for low income earners,” he adds.

To gain these advantages, the choice of MWCNT nanoparticles is critical, he says.

“The MWCNT’s need to have nanometer-scale particle size, which is extremely small. The particles also need to reduce friction and wear, prevent corrosion and clogging, and exhibit very good thermal conductivity,” says Dr Madyira.

Managing flammability

The new refrigerant mix introduces a potential risk though. Unlike R134a, R600a is flammable. On the other hand, it is more energy efficient, and it has a low Global Warming potential. Some refrigerator manufacturers have already adopted production with R600a and these appliances are available in the market.

“To do a safe drop-in replacement, no more than 150g of R600a should be used in a domestic fridge,” says Dr Madyira. “Before the replacement, the fridge used 100g of R134a gas. We replaced that with 50g to 70g of R600a, to stay within safety parameters.”

An untrained person should not attempt this drop-in replacement, says Dr Madyira. Rather, a trained refrigeration technician or technologist should do it.

Replacement procedure

“Mineral oil is used as the compressor oil. This should be mixed with the recommended concentration. A magnetic stirrer and ultrasonicator are needed to agitate and homogenize the ingredients in the mixture. The mixture can then be introduced into the compressor. After that, R600a can be charged into the refrigerator compressor, while taking care to not use more than 150g of the gas,” says Dr Madyira.

A woman’s fridge is her castle [Haven’t seen that kind of reference in many years]

A far more energy-efficient refrigerant, such as the R600a-MWCNT mix, can save consumers a lot of money. Vulnerable households in hot climates in developing countries can benefit even more.

Low income earners in many countries are dependent on home fridges and freezers to safely store bulk food supplies. This greatly reduces the risk of wasting food due to spoilage, or food poisoning due to improperly stored food. These appliances are no longer a luxury but a necessity, says Dr Madyira.

Without fridges, people may be forced to buy food daily in small quantities and at much higher prices. Because daily buying may not be required anymore, travel time and costs for buying food can be much lower as well.

Refrigeration also makes it possible to safely store more diverse food supplies, such as fresh fruit and vegetables. Medicines that require cooling can be stored at home. This can make more balanced diets and nutrition, and better physical health, more accessible for a low-income household.

Grid power still rules for low-income refrigeration

From a sustainability point of view, it can look preferable to run most home fridges and freezers from solar power.

However solar panels, backup batteries, and direct current (DC) fridges are still too expensive for most low-income families in areas served by power utilities.

Energy-efficient, alternating current (AC) fridges running on grid power may be more affordable for most. Further cutting power consumption with R600a-MWCNT refrigerant can bring down costs even more.

Refrigeration for all vs demand-side management

As more low-income households and small businesses switch on grid-powered fridges, freezers and air-conditioning, power demand needs be managed better

In South Africa where the study was conducted, the state-operated power utility faces huge challenges in meeting demand consistently. Long-lasting rolling blackouts, known as load-shedding, have been implemented as a demand-side power management measure.

Shaving off more than a quarter of the power consumption of fridges, freezers and air-conditioning units can free up national power supply for improved energy security.

Here’s a link to and a citation for the paper,

Energy performance evaluation of R600a/MWCNT-nanolubricant as a drop-in replacement for R134a in household refrigerator system by T.O Babarinde, S.A Akinlabi, D.M Madyira. Energy Reports Volume 6, Supplement 2 ([proceedings] The 6th International Conference on Power and Energy Systems Engineering (CPESE 2019), 20–23 September 2019, Okinawa, Japan), February 2020, Pages 639-647 DOI: https://doi.org/10.101/j.egyr.2019.11.132

This paper is open access.

Canadian and Italian researchers go beyond graphene with 2D polymers

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According to a May 20,2020 McGill University news release (also on EurkekAltert), a team of Canadian and Italian researchers has broken new ground in materials science (Note: There’s a press release I found a bit more accessible and therefore informative coming up after this one),

A study by a team of researchers from Canada and Italy recently published in Nature Materials could usher in a revolutionary development in materials science, leading to big changes in the way companies create modern electronics.

The goal was to develop two-dimensional materials, which are a single atomic layer thick, with added functionality to extend the revolutionary developments in materials science that started with the discovery of graphene in 2004.

In total, 19 authors worked on this paper from INRS [Institut National de la Recherche Scientifique], McGill {University], Lakehead [University], and Consiglio Nazionale delle Ricerche, the national research council in Italy.

This work opens exciting new directions, both theoretical and experimental. The integration of this system into a device (e.g. transistors) may lead to outstanding performances. In addition, these results will foster more studies on a wide range of two-dimensional conjugated polymers with different lattice symmetries, thereby gaining further insights into the structure vs. properties of these systems.

The Italian/Canadian team demonstrated the synthesis of large-scale two-dimensional conjugated polymers, also thoroughly characterizing their electronic properties. They achieved success by combining the complementary expertise of organic chemists and surface scientists.

“This work represents an exciting development in the realization of functional two-dimensional materials beyond graphene,” said Mark Gallagher, a Physics professor at Lakehead University.

“I found it particularly rewarding to participate in this collaboration, which allowed us to combine our expertise in organic chemistry, condensed matter physics, and materials science to achieve our goals.”

Dmytro Perepichka, a professor and chair of Chemistry at McGill University, said they have been working on this research for a long time.

“Structurally reconfigurable two-dimensional conjugated polymers can give a new breadth to applications of two-dimensional materials in electronics,” Perepichka said.

“We started dreaming of them more than 15 years ago. It’s only through this four-way collaboration, across the country and between the continents, that this dream has become the reality.”

Federico Rosei, a professor at the Énergie Matériaux Télécommunications Research Centre of the Institut National de la Recherche Scientifique (INRS) in Varennes who holds the Canada Research Chair in Nanostructured Materials since 2016, said they are excited about the results of this collaboration.

“These results provide new insights into mechanisms of surface reactions at a fundamental level and simultaneously yield a novel material with outstanding properties, whose existence had only been predicted theoretically until now,” he said.

About this study

“Synthesis of mesoscale ordered two-dimensional π-conjugated polymers with semiconducting properties” by G. Galeotti et al. was published in Nature Materials.

This research was partially supported by a project Grande Rilevanza Italy-Quebec of the Italian Ministero degli Affari Esteri e della Cooperazione Internazionale, Direzione Generale per la Promozione del Sistema Paese, the Natural Sciences and Engineering Research Council of Canada, the Fonds Québécois de la recherche sur la nature et les technologies and a US Army Research Office. Federico Rosei is also grateful to the Canada Research Chairs program for funding and partial salary support.

About McGill University

Founded in Montreal, Quebec, in 1821, McGill is a leading Canadian post-secondary institution. It has two campuses, 11 faculties, 13 professional schools, 300 programs of study and over 40,000 students, including more than 10,200 graduate students. McGill attracts students from over 150 countries around the world, its 12,800 international students making up 31% per cent of the student body. Over half of McGill students claim a first language other than English, including approximately 19% of our students who say French is their mother tongue.

About the INRS
The Institut National de la Recherche Scientifique (INRS) is the only institution in Québec dedicated exclusively to graduate level university research and training. The impacts of its faculty and students are felt around the world. INRS proudly contributes to societal progress in partnership with industry and community stakeholders, both through its discoveries and by training new researchers and technicians to deliver scientific, social, and technological breakthroughs in the future.

Lakehead University
Lakehead University is a fully comprehensive university with approximately 9,700 full-time equivalent students and over 2,000 faculty and staff at two campuses in Orillia and Thunder Bay, Ontario. Lakehead has 10 faculties, including Business Administration, Education, Engineering, Graduate Studies, Health & Behavioural Sciences, Law, Natural Resources Management, the Northern Ontario School of Medicine, Science & Environmental Studies, and Social Sciences & Humanities. In 2019, Maclean’s 2020 University Rankings, once again, included Lakehead University among Canada’s Top 10 primarily undergraduate universities, while Research Infosource named Lakehead ‘Research University of the Year’ in its category for the fifth consecutive year. Visit www.lakeheadu.ca

I’m a little surprised there wasn’t a quote from one of the Italian researchers in the McGill news release but then there isn’t a quote in this slightly more accessible May 18, 2020 Consiglio Nazionale delle Ricerche press release either,

Graphene’s isolation took the world by surprise and was meant to revolutionize modern electronics. However, it was soon realized that its intrinsic properties limit the utilization in our daily electronic devices. When a concept of Mathematics, namely Topology, met the field of on-surface chemistry, new materials with exotic features were theoretically discovered. Topological materials exhibit technological relevant properties such as quantum hall conductivity that are protected by a concept similar to the comparison of a coffee mug and a donut.  These structures can be synthesized by the versatile molecular engineering toolbox that surface reactions provide. Nevertheless, the realization of such a material yields access to properties that suit the figure of merits for modern electronic application and could eventually for example lead to solve the ever-increasing heat conflict in chip design. However, problems such as low crystallinity and defect rich structures prevented the experimental observation and kept it for more than a decade a playground only investigated theoretically.

An international team of scientists from Institut National de la Recherche Scientifique (Centre Energie, Matériaux et Télécommunications), McGill University and Lakehead University, both located in Canada, and the SAMOS laboratory of the Istituto di Struttura della Materia (Cnr), led by Giorgio Contini, demonstrates, in a recent publication on Nature Materials, that the synthesis of two-dimensional π-conjugated polymers with topological Dirac cone and flats bands became a reality allowing a sneak peek into the world of organic topological materials.

Complementary work of organic chemists and surface scientists lead to two-dimensional polymers on a mesoscopic scale and granted access to their electronic properties. The band structure of the topological polymer reveals both flat bands and a Dirac cone confirming the prediction of theory. The observed coexistence of both structures is of particular interest, since whereas Dirac cones yield massless charge carriers (a band velocity of the same order of magnitude of graphene has been obtained), necessary for technological applications, flat bands quench the kinetic energy of charge carriers and could give rise to intriguing phenomena such as the anomalous Hall effect, surface superconductivity or superfluid transport.

This work paths multiple new roads – both theoretical and experimental nature. The integration of this topological polymer into a device such as transistors possibly reveals immense performance. On the other hand, it will foster many researchers to explore a wide range of two-dimensional polymers with different lattice symmetries, obtaining insight into the relationship between geometrical and electrical topology, which would in return be beneficial to fine tune a-priori theoretical studies. These materials – beyond graphene – could be then used for both their intrinsic properties as well as their interplay in new heterostructure designs.

The authors are currently exploring the practical use of the realized material trying to integrate it into transistors, pushing toward a complete designing of artificial topological lattices.

This work was partially supported by a project Grande Rilevanza Italy-Quebec of the Italian Ministero degli Affari Esteri e della Cooperazione Internazionale (MAECI), Direzione Generale per la Promozione del Sistema Paese.

The Italians also included an image to accompany their press release,

Image of the synthesized material and its band structure Courtesy: Consiglio Nazionale delle Ricerche

My heart sank when I saw the number of authors for this paper (WordPress no longer [since their Christmas 2018 update] makes it easy to add the author’s names quickly to the ‘tags field’). Regardless and in keeping with my practice, here’s a link to and a citation for the paper,

Synthesis of mesoscale ordered two-dimensional π-conjugated polymers with semiconducting properties by G. Galeotti, F. De Marchi, E. Hamzehpoor, O. MacLean, M. Rajeswara Rao, Y. Chen, L. V. Besteiro, D. Dettmann, L. Ferrari, F. Frezza, P. M. Sheverdyaeva, R. Liu, A. K. Kundu, P. Moras, M. Ebrahimi, M. C. Gallagher, F. Rosei, D. F. Perepichka & G. Contini. Nature Materials (2020) DOI: https://doi.org/10.1038/s41563-020-0682-z Published 18 May 2020

This paper is behind a paywall.

Glass sponge reefs: ‘living dinosaurs’ of the Pacific Northwest waters

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Glass sponges in Howe Sound. Credit: Adam Taylor, MLSS [Marine Life Sanctuaries Society]

One of them looks to be screaming (Edvard Munch, anyone?) and none of it looks how I imagined an oceanic ‘living dinosaur’ might. While the news is not in my main area of interest (emerging technology), it is close to home. A June 1, 2020 University of British Columbia news release (also on EurekAlert) describes the glass sponge reefs (living dinosaurs) in the Pacific Northwest and current concerns about their welfare,

Warming ocean temperatures and acidification drastically reduce the skeletal strength and filter-feeding capacity of glass sponges, according to new UBC research.

The findings, published in Scientific Reports, indicate that ongoing climate change could have serious, irreversible impacts on the sprawling glass sponge reefs of the Pacific Northwest and their associated marine life – the only known reefs of their kind in the world.

Ranging from the Alaska-Canada border and down through the Strait of Georgia, the reefs play an essential role in water quality by filtering microbes and cycling nutrients through food chains. They also provide critical habitat for many fish and invertebrates, including rockfish, spot prawns, herring, halibut and sharks.

“Glass sponge reefs are ‘living dinosaurs’ thought to have been extinct for 40 million years before they were re-discovered in B.C. in 1986,” said Angela Stevenson, who led the study as a postdoctoral fellow at UBC Zoology. “Their sheer size and tremendous filtration capacity put them at the heart of a lush and productive underwater system, so we wanted to examine how climate change might impact their survival.”

Although the reefs are subject to strong, ongoing conservation efforts focused on limiting damage to their delicate glass structures, scientists know little about how these sponges respond to environmental changes.

For the study, Stevenson harvested Aphrocallistes vastus, one of three types of reef-building glass sponges, from Howe Sound and brought them to UBC where she ran the first successful long-term lab experiment involving live sponges by simulating their natural environment as closely as possible.

She then tested their resilience by placing them in warmer and more acidic waters that mimicked future projected ocean conditions.

Over a period of four months, Stevenson measured changes to their pumping capacity, body condition and skeletal strength, which are critical indicators of their ability to feed and build reefs.

Within one month, ocean acidification and warming, alone and in combination, reduced the sponges’ pumping capacity by more than 50 per cent and caused tissue losses of 10 to 25 per cent, which could starve the sponges.

“Most worryingly, pumping began to slow within two weeks of exposure to elevated temperatures,” said Stevenson.

The combination of acidification and warming also made their bodies weaker and more elastic by half. That could curtail reef formation and cause brittle reefs to collapse under the weight of growing sponges or animals walking and swimming among them.

Year-long temperature data collected from Howe Sound reefs in 2016 suggest it’s only a matter of time before sponges are exposed to conditions which exceed these thresholds.

“In Howe Sound, we want to figure out a way to track changes in sponge growth, size and area and area in the field so we can better understand potential climate implications at a larger scale,” said co-author Jeff Marliave, senior research scientist at the Ocean Wise Research Institute. “We also want to understand the microbial food webs that support sponges and how they might be influenced by climate cycles.”

Stevenson credits bottom-up community-led efforts and strong collaborations with government for the healthy, viable state of the B.C. reefs today. Added support for such community efforts and educational programs will be key to relieving future pressures.

“When most people think about reefs, they think of tropical shallow-water reefs like the beautiful Great Barrier Reef in Australia,” added Stevenson. “But we have these incredible deep-water reefs in our own backyard in Canada. If we don’t do our best to stand up for them, it will be like discovering a herd of dinosaurs and then immediately dropping dynamite on them.”

Background:

The colossal reefs can grow to 19 metres in height and are built by larval sponges settling atop the fused dead skeletons of previous generations. In northern B.C. the reefs are found at depths of 90 to 300 metres, while in southern B.C., they can be found as shallow as 22 metres.

The sponges feed by pumping sea water through their delicate bodies, filtering almost 80 per cent of microbes and particles and expelling clean water.

It’s estimated that the 19 known reefs in the Salish Sea can filter 100 billion litres of water every day, equivalent to one per cent of the total water volume in the Strait of Georgia and Howe Sound combined.

Here’s a link to and a citation for the paper,

Warming and acidification threaten glass sponge Aphrocallistes vastus pumping and reef formation by A. Stevenson, S. K. Archer, J. A. Schultz, A. Dunham, J. B. Marliave, P. Martone & C. D. G. Harley. Scientific Reports volume 10, Article number: 8176 (2020) DOI: https://doi.org/10.1038/s41598-020-65220-9 Published 18 May 2020

This paper is open access.

Almost finally, there’s a brief video of the glass sponges in their habitat,

Circling back to Edvard Munch,

Courtesy of www.EdvardMunch.org [downloaded from https://www.edvardmunch.org/the-scream.jsp]

Here’s more about the painting, from The Scream webpage on edvardmunch.org,

Munch’s The Scream is an icon of modern art, the Mona Lisa for our time. As Leonardo da Vinci evoked a Renaissance ideal of serenity and self-control, Munch defined how we see our own age – wracked with anxiety and uncertainty.

Essentially The Scream is autobiographical, an expressionistic construction based on Munch’s actual experience of a scream piercing through nature while on a walk, after his two companions, seen in the background, had left him. …

For all the times I’ve seen the image, I had no idea the inspiration was acoustic.

In any event, the image seems sadly à propos both for the glass sponge reefs (and nature generally) and with regard to Black Lives Matter (BLM). A worldwide conflagration was ignited by George Floyd’s death in Minneapolis on May 25, 2020. This African-American man died while saying, “I can’t breathe,” as a police officer held Floyd down with a knee on his neck. RIP (rest in peace) George Floyd while the rest of us make the changes necessary, no matter how difficult to create a just and respectful world for all. Black Lives Matter.

Nanodevices show (from the inside) how cells change

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Embryo cells + nanodevices from University of Bath on Vimeo.

Caption: Five mouse embryos, each containing a nanodevice that is 22-millionths of a metre long. The film begins when the embryos are 2-hours old and continues for 5 hours. Each embryo is about 100-millionths of a metre in diameter. Credit: Professor Tony Perry

Fascinating, yes? As I often watch before reading the caption, these were mysterious grey blobs moving around was my first impression. Given the headline for the May 26, 2020 news item on ScienceDaily, I was expecting the squarish-shaped devices inside,

For the first time, scientists have introduced minuscule tracking devices directly into the interior of mammalian cells, giving an unprecedented peek into the processes that govern the beginning of development.

This work on one-cell embryos is set to shift our understanding of the mechanisms that underpin cellular behaviour in general, and may ultimately provide insights into what goes wrong in ageing and disease.

The research, led by Professor Tony Perry from the Department of Biology and Biochemistry at the University of Bath [UK], involved injecting a silicon-based nanodevice together with sperm into the egg cell of a mouse. The result was a healthy, fertilised egg containing a tracking device.

…

This image looks to have been enhanced with colour,

Fluorescence of an embryo containing a nanodevice. Courtesy: University of Bath

A May 25, 2020 University of Bath press release (also on EurekAlert but published May 26, 2020)

The tiny devices are a little like spiders, complete with eight highly flexible ‘legs’. The legs measure the ‘pulling and pushing’ forces exerted in the cell interior to a very high level of precision, thereby revealing the cellular forces at play and showing how intracellular matter rearranged itself over time.

The nanodevices are incredibly thin – similar to some of the cell’s structural components, and measuring 22 nanometres, making them approximately 100,000 times thinner than a pound coin. This means they have the flexibility to register the movement of the cell’s cytoplasm as the one-cell embryo embarks on its voyage towards becoming a two-cell embryo.

“This is the first glimpse of the physics of any cell on this scale from within,” said Professor Perry. “It’s the first time anyone has seen from the inside how cell material moves around and organises itself.”

WHY PROBE A CELL’S MECHANICAL BEHAVIOUR?

The activity within a cell determines how that cell functions, explains Professor Perry. “The behaviour of intracellular matter is probably as influential to cell behaviour as gene expression,” he said. Until now, however, this complex dance of cellular material has remained largely unstudied. As a result, scientists have been able to identify the elements that make up a cell, but not how the cell interior behaves as a whole.

“From studies in biology and embryology, we know about certain molecules and cellular phenomena, and we have woven this information into a reductionist narrative of how things work, but now this narrative is changing,” said Professor Perry. The narrative was written largely by biologists, who brought with them the questions and tools of biology. What was missing was physics. Physics asks about the forces driving a cell’s behaviour, and provides a top-down approach to finding the answer.

“We can now look at the cell as a whole, not just the nuts and bolts that make it.”

Mouse embryos were chosen for the study because of their relatively large size (they measure 100 microns, or 100-millionths of a metre, in diameter, compared to a regular cell which is only 10 microns [10-millionths of a metre] in diameter). This meant that inside each embryo, there was space for a tracking device.

The researchers made their measurements by examining video recordings taken through a microscope as the embryo developed. “Sometimes the devices were pitched and twisted by forces that were even greater than those inside muscle cells,” said Professor Perry. “At other times, the devices moved very little, showing the cell interior had become calm. There was nothing random about these processes – from the moment you have a one-cell embryo, everything is done in a predictable way. The physics is programmed.”

The results add to an emerging picture of biology that suggests material inside a living cell is not static, but instead changes its properties in a pre-ordained way as the cell performs its function or responds to the environment. The work may one day have implications for our understanding of how cells age or stop working as they should, which is what happens in disease.

The study is published this week in Nature Materials and involved a trans-disciplinary partnership between biologists, materials scientists and physicists based in the UK, Spain and the USA.

Here’s a link to and a citation for the paper,

Tracking intracellular forces and mechanical property changes in mouse one-cell embryo development by Marta Duch, Núria Torras, Maki Asami, Toru Suzuki, María Isabel Arjona, Rodrigo Gómez-Martínez, Matthew D. VerMilyea, Robert Castilla, José Antonio Plaza & Anthony C. F. Perry. Nature Materials (2020) DOI: https://doi.org/10.1038/s41563-020-0685-9 Published 25 May 2020

This paper is behind a paywall.

Implanted biosensors could help sports professionals spy on themselves

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A May 21, 2020 news item on Nanowerk describes the latest in sports self-monitoring research (or as I like to think of it, spying on yourself),

Researchers from the University of Surrey have revealed their new biodegradable motion sensor – paving the way for implanted nanotechnology that could help future sports professionals better monitor their movements to aid rapid improvements, or help caregivers remotely monitor people living with dementia.

…

A May 21, 12020 University of Surrey press release (also on EurekAlert), which originated the news item, mentioned the collaboration with a South Korean University and provides a few details about this work,

In a paper published by Nano Energy, a team from Surrey’s Advanced Technology Institute (ATI), in partnership with Kyung Hee University in South Korea, detail how they developed a nano-biomedical motion sensor which can be paired with AI systems to recognise movements of distinct body parts.

The ATI’s technology builds on its previous work around triboelectric nanogenerators (TENG), where researchers used the technology to harness human movements and generate small amounts of electrical energy. Combining the two means self-powered sensors are possible without the need for chemical or wired power sources.

In their new research, the team from the ATI developed a flexible, biodegradable and long-lasting TENG from silk cocoon waste. They used a new alcohol treatment technique, which leads to greater durability for the device, even under harsh or humid environments.

Dr. Bhaskar Dudem, project lead and Research Fellow at the ATI, said: “We are excited to show the world the immense potential of our durable, silk film based nanogenerator. It’s ability to work in severe environments while being able to generate electricity and monitor human movements positions our TENG in a class of its own when it comes to the technology.”

Professor Ravi Silva, Director of the ATI, said: “We are proud of Dr Dudem’s work which is helping the ATI lead the way in developing wearable, flexible, and biocompatible TENGs that efficiently harvest environmental energies. If we are to live in a future where autonomous sensing and detecting of pathogens is important, the ability to create both self-powered and wireless biosensors linked to AI is a significant boost.”

Here’s a link to and a citation for the paper,

Exploring theoretical and experimental optimization towards high-performance triboelectric nanogenerators using microarchitecture silk cocoon films by Bhaskar Dudem, R.D. Ishara G. Dharmasena, Sontyana Adonijah Graham, Jung Woo Leem, Harishkumarreddy Patnam, Anki Reddy Mule, S. Ravi P. Silva, Jae Su Yu. Nano Energy DOI: https://doi.org/10.1016/j.nanoen.2020.104882 Available online 11 May 2020, 104882

This paper is behind a paywall.